mRNA_Ecto-sp9_F_contig8752.16934.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig8752.16934.1
Unique NamemRNA_Ecto-sp9_F_contig8752.16934.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig8752.16934.1 vs.
Match: EsV-1-5 (n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNQ4_ESV1K)

HSP 1 Score: 380 bits (977), Expect = 5.370e-130
Identity = 200/301 (66.45%), Postives = 228/301 (75.75%), Query Frame = 1 
Query:    1 MLTKNIWSQIGVNPADALLPPVHNLGMIILREELTEAESDLHAARVALKTLEEAGASGDTRDLYTAMWKLQKKEQAYFARRYLQTNKAVLRGWHNQVSKYKSSGE-KVGHGVQGVVYGVINHPDKVVKLYATRHQLAHNSITTKQFVYDKTASDNGFGPKIYEISSDDRVVDLSDKSTVPKYRYKRKFSVVMERLADI----DMDKQYVGIVNLWKKMRQHGLFSGDGFYGYSLQHKAIVHADFGAVWKTKDDDEFKDAVYEHLEERKDSGGLDPDIARRYRDEFPGDPFTKEILVPVLAK 888
            MLTKNIWSQIG+NPA+ LLPPVHN+GMIILREELT+AE+DLHAARVALKTLEEAGASGDT DLYTAMWKLQKKEQAYFARRYLQTNKAVLRGWHNQVSKYK   E  VGHGVQG+VY VINHPDKVVK Y+ R       +TTKQFVYD+ A + GFGP+IYEISSD RV+DLSDKST+PK+      SVVME++  +    ++ K   GIV +WKKMRQ GL + DGFY +SL+ KAIV  DFG V +  +D  F D +YE  +     G  DP IA +Y  E P D FTK IL P L K
Sbjct:    1 MLTKNIWSQIGINPANTLLPPVHNVGMIILREELTDAENDLHAARVALKTLEEAGASGDTSDLYTAMWKLQKKEQAYFARRYLQTNKAVLRGWHNQVSKYKFRKEASVGHGVQGIVYHVINHPDKVVKRYSVRRPGTLAFLTTKQFVYDRIACEQGFGPQIYEISSDGRVIDLSDKSTIPKFEKGLIISVVMEKIEKMTDQEELLKNSGGIVGVWKKMRQGGLLNVDGFYAHSLKQKAIVAGDFGVVEEATNDQMFIDKMYEFFDSCLSIGANDPGIALKYEKEHPEDSFTKLILKPALDK 301
[Close]
BLAST of mRNA_Ecto-sp9_F_contig8752.16934.1 vs.
Match: EsV-1-3 (n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNQ6_ESV1K)

HSP 1 Score: 94.7 bits (234), Expect = 2.120e-19
Identity = 54/92 (58.70%), Postives = 63/92 (68.48%), Query Frame = 1 
Query:    7 TKNIWSQIGVNPADALLPPVHNLGMIILREELTEAESDLHAARVALKTLEEAGASGDTRDLYTAMWKLQKKEQAYFARRYLQTNKA-VLRGW 279
            T  I + IG+NP+  LLPPVHNL MI L+E LT+AE DLHAARVALK LE A    + + LY AM KLQ KE  YFA RY+   K  +LRGW
Sbjct:   25 TPMIKAGIGLNPSKPLLPPVHNLRMIYLKEPLTDAEKDLHAARVALKLLETADNDVNRKALYKAMAKLQGKEAQYFATRYIGRGKPQILRGW 116
[Close]
BLAST of mRNA_Ecto-sp9_F_contig8752.16934.1 vs.
Match: EsV-1-4 (n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNQ5_ESV1K)

HSP 1 Score: 87.8 bits (216), Expect = 1.600e-16
Identity = 48/92 (52.17%), Postives = 62/92 (67.39%), Query Frame = 1 
Query:   28 IGVNPADALLPPVHNLGMIILREELTEAESDLHAARVALKTLEEAGASGDTRDLYTAMWKLQKKEQAYFARRYLQTNKAVLRGWHNQVSKYK 303
            IG+NP+  LLPPVHNL MI L+E   +AE  LH ARVALK+++  G    T  LY AM KL+  E+ YFARRY   +KA+L+GW+ +  K K
Sbjct:   56 IGLNPSKPLLPPVHNLRMIYLKEPFGDAEIHLHDARVALKSVQNGGP---TAPLYAAMAKLEVAERDYFARRYFDGDKAILKGWNAEKFKQK 144
[Close]
BLAST of mRNA_Ecto-sp9_F_contig8752.16934.1 vs.
Match: EsV-1-213-like (protein 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=B2KWI7_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 6.170e-16
Identity = 47/59 (79.66%), Postives = 50/59 (84.75%), Query Frame = 2 
Query:  677 DTRFNTRQSFMQILAQFGKQKTMMSSKMQCMNTWKNARTAGGLTRTLREDTETSSRATR 853
            DTRFNTRQSFMQIL QFGKQKT  SS MQCMNTWKNA TAG L+R LR++TETS R TR
Sbjct:  617 DTRFNTRQSFMQILVQFGKQKTTKSSTMQCMNTWKNATTAGALSRVLRKNTETSLRKTR 675
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8752.16934.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
EsV-1-55.370e-13066.45n=1 Tax=Ectocarpus siliculosus virus 1 (isolate Ne... [more]
EsV-1-32.120e-1958.70n=1 Tax=Ectocarpus siliculosus virus 1 (isolate Ne... [more]
EsV-1-41.600e-1652.17n=1 Tax=Ectocarpus siliculosus virus 1 (isolate Ne... [more]
EsV-1-213-like6.170e-1679.66protein 1 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8752contigEcto-sp9_F_contig8752:3347..4246 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size900
Cds size900
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930923.290564-CDS-Ecto-sp9_F_contig8752:3346..42461622930923.290564-CDS-Ecto-sp9_F_contig8752:3346..4246Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8752 3347..4246 -
1692278950.590381-CDS-Ecto-sp9_F_contig8752:3346..42461692278950.590381-CDS-Ecto-sp9_F_contig8752:3346..4246Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8752 3347..4246 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8752.16934.1prot_Ecto-sp9_F_contig8752.16934.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig8752 3347..4246 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig8752.16934.1

>prot_Ecto-sp9_F_contig8752.16934.1 ID=prot_Ecto-sp9_F_contig8752.16934.1|Name=mRNA_Ecto-sp9_F_contig8752.16934.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=300bp
MLTKNIWSQIGVNPADALLPPVHNLGMIILREELTEAESDLHAARVALKT
LEEAGASGDTRDLYTAMWKLQKKEQAYFARRYLQTNKAVLRGWHNQVSKY
KSSGEKVGHGVQGVVYGVINHPDKVVKLYATRHQLAHNSITTKQFVYDKT
ASDNGFGPKIYEISSDDRVVDLSDKSTVPKYRYKRKFSVVMERLADIDMD
KQYVGIVNLWKKMRQHGLFSGDGFYGYSLQHKAIVHADFGAVWKTKDDDE
FKDAVYEHLEERKDSGGLDPDIARRYRDEFPGDPFTKEILVPVLAKLGI*
back to top

mRNA from alignment at Ecto-sp9_F_contig8752:3347..4246-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig8752.16934.1 ID=mRNA_Ecto-sp9_F_contig8752.16934.1|Name=mRNA_Ecto-sp9_F_contig8752.16934.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=900bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8752:3347..4246- (Ectocarpus species9 EcSCA_722f female)
ATGCTCACCAAAAACATATGGTCTCAGATCGGGGTAAACCCCGCGGATGC
CCTCTTACCACCAGTGCACAATCTGGGCATGATCATCCTTCGGGAAGAGT
TGACGGAAGCCGAAAGCGATTTGCACGCCGCGCGCGTAGCACTGAAAACA
CTCGAAGAAGCCGGTGCCAGCGGTGACACCCGCGACCTATATACAGCGAT
GTGGAAGCTACAAAAAAAAGAACAAGCATACTTTGCGAGACGCTACTTGC
AGACAAACAAAGCCGTGCTTCGGGGATGGCACAACCAAGTTTCCAAATAC
AAATCCTCGGGGGAAAAAGTGGGGCATGGAGTTCAGGGAGTTGTCTACGG
CGTAATCAACCACCCAGACAAAGTTGTCAAACTGTATGCTACACGTCACC
AGCTTGCACACAACTCTATCACCACGAAGCAATTCGTCTACGACAAGACC
GCCTCCGACAACGGGTTCGGTCCCAAAATATACGAGATTTCTTCCGATGA
TCGAGTCGTTGACCTGTCGGACAAAAGCACAGTGCCCAAATATCGTTATA
AAAGAAAATTTTCGGTAGTCATGGAAAGGTTAGCAGATATAGACATGGAT
AAACAGTATGTTGGAATTGTTAACTTGTGGAAAAAAATGAGACAACACGG
ACTCTTTAGTGGAGACGGATTCTATGGATACTCGCTTCAACACAAGGCAA
TCGTTCATGCAGATTTTGGCGCAGTTTGGAAAACAAAAGACGATGATGAG
TTCAAAGATGCAGTGTATGAACACTTGGAAGAACGCAAGGACAGCGGGGG
GCTTGACCCGGACATTGCGCGAAGATACAGAGACGAGTTCCCGGGCGACC
CGTTCACAAAAGAGATCTTGGTACCAGTGTTGGCAAAGTTAGGCATCTAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8752:3347..4246-

>mRNA_Ecto-sp9_F_contig8752.16934.1 ID=mRNA_Ecto-sp9_F_contig8752.16934.1|Name=mRNA_Ecto-sp9_F_contig8752.16934.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1800bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8752:3347..4246- (Ectocarpus species9 EcSCA_722f female)
ATGCTCACCAAAAACATATGGTCTCAGATCGGGGTAAACCCCGCGGATGC
CCTCTTACCACCAGTGCACAATCTGGGCATGATCATCCTTCGGGAAGAGT
TGACGGAAGCCGAAAGCGATTTGCACGCCGCGCGCGTAGCACTGAAAACA
CTCGAAGAAGCCGGTGCCAGCGGTGACACCCGCGACCTATATACAGCGAT
GTGGAAGCTACAAAAAAAAGAACAAGCATACTTTGCGAGACGCTACTTGC
AGACAAACAAAGCCGTGCTTCGGGGATGGCACAACCAAGTTTCCAAATAC
AAATCCTCGGGGGAAAAAGTGGGGCATGGAGTTCAGGGAGTTGTCTACGG
CGTAATCAACCACCCAGACAAAGTTGTCAAACTGTATGCTACACGTCACC
AGCTTGCACACAACTCTATCACCACGAAGCAATTCGTCTACGACAAGACC
GCCTCCGACAACGGGTTCGGTCCCAAAATATACGAGATTTCTTCCGATGA
TCGAGTCGTTGACCTGTCGGACAAAAGCACAGTGCCCAAATATCGTTATA
AAAGAAAATTTTCGGTAGTCATGGAAAGGTTAGCAGATATAGACATGGAT
AAACAGTATGTTGGAATTGTTAACTTGTGGAAAAAAATGAGACAACACGG
ACTCTTTAGTGGAGACGGATTCTATGGATACTCGCTTCAACACAAGGCAA
TCGTTCATGCAGATTTTGGCGCAGTTTGGAAAACAAAAGACGATGATGAG
TTCAAAGATGCAGTGTATGAACACTTGGAAGAACGCAAGGACAGCGGGGG
GCTTGACCCGGACATTGCGCGAAGATACAGAGACGAGTTCCCGGGCGACC
CGTTCACAAAAGAGATCTTGGTACCAGTGTTGGCAAAGTTAGGCATCTAA
ATGCTCACCAAAAACATATGGTCTCAGATCGGGGTAAACCCCGCGGATGC
CCTCTTACCACCAGTGCACAATCTGGGCATGATCATCCTTCGGGAAGAGT
TGACGGAAGCCGAAAGCGATTTGCACGCCGCGCGCGTAGCACTGAAAACA
CTCGAAGAAGCCGGTGCCAGCGGTGACACCCGCGACCTATATACAGCGAT
GTGGAAGCTACAAAAAAAAGAACAAGCATACTTTGCGAGACGCTACTTGC
AGACAAACAAAGCCGTGCTTCGGGGATGGCACAACCAAGTTTCCAAATAC
AAATCCTCGGGGGAAAAAGTGGGGCATGGAGTTCAGGGAGTTGTCTACGG
CGTAATCAACCACCCAGACAAAGTTGTCAAACTGTATGCTACACGTCACC
AGCTTGCACACAACTCTATCACCACGAAGCAATTCGTCTACGACAAGACC
GCCTCCGACAACGGGTTCGGTCCCAAAATATACGAGATTTCTTCCGATGA
TCGAGTCGTTGACCTGTCGGACAAAAGCACAGTGCCCAAATATCGTTATA
AAAGAAAATTTTCGGTAGTCATGGAAAGGTTAGCAGATATAGACATGGAT
AAACAGTATGTTGGAATTGTTAACTTGTGGAAAAAAATGAGACAACACGG
ACTCTTTAGTGGAGACGGATTCTATGGATACTCGCTTCAACACAAGGCAA
TCGTTCATGCAGATTTTGGCGCAGTTTGGAAAACAAAAGACGATGATGAG
TTCAAAGATGCAGTGTATGAACACTTGGAAGAACGCAAGGACAGCGGGGG
GCTTGACCCGGACATTGCGCGAAGATACAGAGACGAGTTCCCGGGCGACC
CGTTCACAAAAGAGATCTTGGTACCAGTGTTGGCAAAGTTAGGCATCTAA
back to top