mRNA_Ecto-sp9_F_contig8751.16932.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig8751.16932.1 vs.
Match: Golgi (apparatus membrane protein TVP23 homolog n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM82_9PHAE) HSP 1 Score: 336 bits (862), Expect = 1.600e-113 Identity = 180/187 (96.26%), Postives = 183/187 (97.86%), Query Frame = 1
Query: 1 MGNFKFVSSSSVMTYIICILMLAFDFWTVKNVSGRLMVGLRWWSNVKEDGTTEWVFESLEDMSEINSADYKLFWIGLYGTPVLWVCLLVTGIMLLKFQWLVIVVIALLLSGANIYGYTKCNADAKVKVQQMVNDGMMAGAMQGAQAALGNVGLRNALFSMFGGDQAQQGXXXXXXXXXNNGPGMNNV 561
MGNFKFVSSSSVMTYIICILMLAFDFWTVKNVSGRLMVGLRWWSNV DGTTEWVFESLEDMSEINSADYKLFWIGLYGTPVLWVCLLVTGIMLLKFQWLVIVVIALLLSGANIYGYTKCNAD+KVKVQQMVNDGMMAGAMQGAQAALGNVGLRNALFSMFGGDQAQQG XXXXXXX +NGPG+NNV
Sbjct: 181 MGNFKFVSSSSVMTYIICILMLAFDFWTVKNVSGRLMVGLRWWSNVTADGTTEWVFESLEDMSEINSADYKLFWIGLYGTPVLWVCLLVTGIMLLKFQWLVIVVIALLLSGANIYGYTKCNADSKVKVQQMVNDGMMAGAMQGAQAALGNVGLRNALFSMFGGDQAQQGGXXXXXXXSSNGPGINNV 367
BLAST of mRNA_Ecto-sp9_F_contig8751.16932.1 vs.
Match: Golgi (apparatus membrane protein TVP23 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV24_ECTSI) HSP 1 Score: 324 bits (830), Expect = 5.670e-111 Identity = 184/210 (87.62%), Postives = 184/210 (87.62%), Query Frame = 1
Query: 1 MGNFKFVSSSSVMTYIICILMLAFDFWTVKNVSGRLM-----------------------VGLRWWSNVKEDGTTEWVFESLEDMSEINSADYKLFWIGLYGTPVLWVCLLVTGIMLLKFQWLVIVVIALLLSGANIYGYTKCNADAKVKVQQMVNDGMMAGAMQGAQAALGNVGLRNALFSMFGGDQAQQGXXXXXXXXXNNGPGMNNV 561
MGNFKFVSSSSVMTYIICILMLAFDFWTVKNVSGRLM VGLRWWSNVKEDGTTEWVFESLEDMSEINSADYKLFWIGLYGTPVLWVCLLVTGIMLLKFQWLVIVVIALLLSGANIYGYTKCNADAKVKVQQMVNDGMMAGAMQGAQAALGNVGLRNALFSMFGGDQAQQGXXXXXXXXX G GMNNV
Sbjct: 1 MGNFKFVSSSSVMTYIICILMLAFDFWTVKNVSGRLMRPGGVGGGWVGIETSRVESNAVQVGLRWWSNVKEDGTTEWVFESLEDMSEINSADYKLFWIGLYGTPVLWVCLLVTGIMLLKFQWLVIVVIALLLSGANIYGYTKCNADAKVKVQQMVNDGMMAGAMQGAQAALGNVGLRNALFSMFGGDQAQQGXXXXXXXXXXXGSGMNNV 210
BLAST of mRNA_Ecto-sp9_F_contig8751.16932.1 vs.
Match: Golgi (apparatus membrane protein TVP23 homolog n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0N0_9STRA) HSP 1 Score: 191 bits (485), Expect = 1.750e-58 Identity = 92/156 (58.97%), Postives = 123/156 (78.85%), Query Frame = 1
Query: 22 SSSSVMTYIICILMLAFDFWTVKNVSGRLMVGLRWWSNVKEDGTTEWVFESLEDMSEINSADYKLFWIGLYGTPVLWVCLLVTGIMLLKFQWLVIVVIALLLSGANIYGYTKCNADAKVKVQQMVNDGMMAGAMQGAQAALGNVGLRNALFSMFGG 489
SS+ V +++C+L LAFDFWTVKNVSGRL+VGLRWW+NVKEDGTTEW FESLEDM+E++SAD +LFW+G+YG P+ W+ + + ++ L FQWL+IVV+AL L+GANI GY KC+ DA+ K++ MV D + GAM + LG+ G+RNALF + G
Sbjct: 40 SSNFVFIFVLCVLCLAFDFWTVKNVSGRLLVGLRWWNNVKEDGTTEWRFESLEDMTEVSSADSRLFWLGMYGAPLAWLVVFIVDLLKLNFQWLIIVVVALTLNGANIVGYIKCSNDARQKLRFMVEDAGVKGAM----SVLGSAGVRNALFGLLAG 191
BLAST of mRNA_Ecto-sp9_F_contig8751.16932.1 vs.
Match: Golgi (apparatus membrane protein TVP23 homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0U0_9STRA) HSP 1 Score: 189 bits (481), Expect = 1.950e-57 Identity = 96/157 (61.15%), Postives = 117/157 (74.52%), Query Frame = 1
Query: 19 VSSSSVMTYIICILMLAFDFWTVKNVSGRLMVGLRWWSNVKEDGTTEWVFESLEDMSEINSADYKLFWIGLYGTPVLWVCLLVTGIMLLKFQWLVIVVIALLLSGANIYGYTKCNADAKVKVQQMVNDGMMAGAMQGAQAALGNVGLRNALFSMFGG 489
+SS+ V+ + IL+LAFDFWTVKN++GRLMVGLRWWSNVKEDGTT WVFESLE+MSEI AD KLFWIGLY P +WV L + G++ QWL+IVV+A+LLS ANI GYTKC+ DAK KV+ + DG MA A+GN G RN +FS+ G
Sbjct: 80 ISSNFVLICVATILLLAFDFWTVKNITGRLMVGLRWWSNVKEDGTTSWVFESLENMSEIQPADSKLFWIGLYAAPAVWVALFIIGLLKFNLQWLIIVVVAILLSTANIVGYTKCSNDAKNKVRNFMQDGAMA--------AMGNAGFRNMMFSVLTG 228
BLAST of mRNA_Ecto-sp9_F_contig8751.16932.1 vs.
Match: Golgi (apparatus membrane protein TVP23 homolog n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KG22_9STRA) HSP 1 Score: 172 bits (435), Expect = 2.010e-50 Identity = 82/144 (56.94%), Postives = 109/144 (75.69%), Query Frame = 1
Query: 19 VSSSSVMTYIICILMLAFDFWTVKNVSGRLMVGLRWWSNVKEDGTTEWVFESLEDMSEINSADYKLFWIGLYGTPVLWVCLLVTGIMLLKFQWLVIVVIALLLSGANIYGYTKCNADAKVKVQQMVNDGMMAGAMQGAQAALGN 450
+S S V ++IC+L+LAFDFWTVKNVSGRL+VGLRWW+ + EDG+ EWVFESLEDMSEI+ D K+FW GLYG PV+WV L+ ++ L +W +I ++AL LSGAN+ GYTKC+ DAK K+Q M M AGA++ ++ G+
Sbjct: 83 MSDSFVFVFVICVLLLAFDFWTVKNVSGRLLVGLRWWNRINEDGSNEWVFESLEDMSEIDPLDAKIFWTGLYGAPVVWVLFLLIAVLKLNVEWALIAIVALTLSGANVVGYTKCSKDAKNKMQSM----MTAGALEALNSSAGS 222
BLAST of mRNA_Ecto-sp9_F_contig8751.16932.1 vs.
Match: Golgi (apparatus membrane protein TVP23 homolog n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1M0B7_HETAK) HSP 1 Score: 171 bits (432), Expect = 4.380e-50 Identity = 82/156 (52.56%), Postives = 108/156 (69.23%), Query Frame = 1
Query: 22 SSSSVMTYIICILMLAFDFWTVKNVSGRLMVGLRWWSNVKEDGTTEWVFESLEDMSEINSADYKLFWIGLYGTPVLWVCLLVTGIMLLKFQWLVIVVIALLLSGANIYGYTKCNADAKVKVQQMVNDGMMAGAMQGAQAALGNVGLRNALFSMFGG 489
SS+ + +++C+L+LA DFWTVKNV+GRL+VGLRWWS+V EDG T+WVFESLED+ E+++ D +LFW+GLY TP W L V G++ QWL++VV+AL LSGANI GYTKC DAK K+Q V G+ + + G RN S F G
Sbjct: 74 SSNFIFLFVLCVLLLAADFWTVKNVTGRLLVGLRWWSHVSEDGKTDWVFESLEDLGEVHAGDARLFWLGLYATPAAWAALFVIGLLKFNLQWLIVVVVALALSGANIIGYTKCRKDAKQKLQGFVESGVTG--------LMASEGFRNTFLSFFTG 221
BLAST of mRNA_Ecto-sp9_F_contig8751.16932.1 vs.
Match: Golgi (apparatus membrane protein TVP23 homolog n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MG51_9STRA) HSP 1 Score: 169 bits (427), Expect = 2.490e-49 Identity = 81/155 (52.26%), Postives = 118/155 (76.13%), Query Frame = 1
Query: 13 KFVSSSSVMTYIICILMLAFDFWTVKNVSGRLMVGLRWWSNVKEDGTTEWVFESLEDMSEINSADYKLFWIGLYGTPVLWVCLLVTGIMLLKFQWLVIVVIALLLSGANIYGYTKCNADAKVKVQQMVNDGMMAGAMQGAQAALGNVGLRNALFS 477
+V+++ + ++ICI++LAFDFWTVKNVSGRL+VGLRWWS VK+DG+ EW+FESLEDM+EI+ D ++FW GLY +P+ W+ LL+ G + L+F++L +V+ AL+L+GANI GY KC++ AK K++ M+ GM QG+ A L N +RN + S
Sbjct: 69 SWVTTNFIFVFVICIVLLAFDFWTVKNVSGRLLVGLRWWSYVKDDGSNEWIFESLEDMAEISPVDSRMFWGGLYVSPLCWLFLLIVGFLRLQFEYLPLVIAALMLNGANILGYIKCSSSAKAKMESMMKQGMQ----QGSMAVLENNSVRNWVLS 219
BLAST of mRNA_Ecto-sp9_F_contig8751.16932.1 vs.
Match: Golgi (apparatus membrane protein TVP23 homolog n=9 Tax=Aphanomyces TaxID=100860 RepID=A0A024TJ00_9STRA) HSP 1 Score: 167 bits (424), Expect = 1.120e-48 Identity = 80/144 (55.56%), Postives = 106/144 (73.61%), Query Frame = 1
Query: 16 FVSSSSVMTYIICILMLAFDFWTVKNVSGRLMVGLRWWSNVKEDGTTEWVFESLEDMSEINSADYKLFWIGLYGTPVLWVCLLVTGIMLLKFQWLVIVVIALLLSGANIYGYTKCNADAKVKVQQMVNDGMMAGAMQGAQAALG 447
FVS+S V ++IC+L+LAFDFWTVKNVSGRL+VGLRWW+ + EDG+ +WVFESLEDMSEI+ D K+FW LYG PV W L+ ++ L +W +I ++AL LSGAN+ GYTKC+ DAK K+ M M AGA++ ++ G
Sbjct: 85 FVSNSFVFIFVICVLLLAFDFWTVKNVSGRLLVGLRWWNRINEDGSNDWVFESLEDMSEIDPLDAKIFWTALYGAPVAWALFLLVAVLKLNVEWALIAIVALTLSGANVVGYTKCSKDAKSKMHSM----MTAGALEALNSSAG 224
BLAST of mRNA_Ecto-sp9_F_contig8751.16932.1 vs.
Match: Golgi (apparatus membrane protein TVP23 homolog n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812Z9G7_SYMMI) HSP 1 Score: 164 bits (416), Expect = 1.680e-48 Identity = 81/152 (53.29%), Postives = 115/152 (75.66%), Query Frame = 1
Query: 22 SSSSVMTYIICILMLAFDFWTVKNVSGRLMVGLRWWSNVKEDGTTEWVFESLEDMSEINSADYKLFWIGLYGTPVLWVCLLVTGIMLLKFQWLVIVVIALLLSGANIYGYTKCNADAKVKVQQMVNDGMMAGAMQGAQAALGNVGLRNALFS 477
+S+ ++ +++CI++LAFDFWTVKNV+GRL+VGLRWWS V+EDG EW+FESLEDM+E+++ D +LFW LY TPV W LL+ G++ LK ++L IV+ AL+LS ANI GY KC+ A+ KV+ ++ +G+ QG+ AAL N LRN + S
Sbjct: 7 TSNFIVVFVVCIILLAFDFWTVKNVTGRLLVGLRWWSYVREDGGNEWIFESLEDMAEVSAFDSRLFWGALYVTPVFWTLLLLMGLLRLKIEYLPIVIAALMLSSANIMGYIKCSNSAQAKVRNLMENGIK----QGSMAALENSSLRNWILS 154
BLAST of mRNA_Ecto-sp9_F_contig8751.16932.1 vs.
Match: Golgi (apparatus membrane protein TVP23 homolog n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XBB3_9STRA) HSP 1 Score: 165 bits (418), Expect = 2.730e-48 Identity = 76/140 (54.29%), Postives = 106/140 (75.71%), Query Frame = 1
Query: 25 SSSVMTYIICILMLAFDFWTVKNVSGRLMVGLRWWSNVKEDGTTEWVFESLEDMSEINSADYKLFWIGLYGTPVLWVCLLVTGIMLLKFQWLVIVVIALLLSGANIYGYTKCNADAKVKVQQMVNDGMMAGAMQGAQAAL 444
SS V +++CIL+LAFDFWTVKNV+GRL+VGLRWW+ + EDGT+EWVFES EDM+EI+ D ++FW GLYG+P LW+ LL+ ++ QW +IV++A+ LSGANI GYT+C DAK K+Q +++ G + A ++L
Sbjct: 51 SSYVFIFVVCILLLAFDFWTVKNVTGRLLVGLRWWNRINEDGTSEWVFESHEDMTEIDPLDSRVFWTGLYGSPALWMLLLIVAVLKFNVQWALIVLVAVALSGANIIGYTRCKKDAKQKMQSLMSQGALGAFSSSAGSSL 190 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8751.16932.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig8751.16932.1 >prot_Ecto-sp9_F_contig8751.16932.1 ID=prot_Ecto-sp9_F_contig8751.16932.1|Name=mRNA_Ecto-sp9_F_contig8751.16932.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=188bp MGNFKFVSSSSVMTYIICILMLAFDFWTVKNVSGRLMVGLRWWSNVKEDGback to top mRNA from alignment at Ecto-sp9_F_contig8751:171..2311+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig8751.16932.1 ID=mRNA_Ecto-sp9_F_contig8751.16932.1|Name=mRNA_Ecto-sp9_F_contig8751.16932.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2141bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8751:171..2311+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8751:171..2311+ >mRNA_Ecto-sp9_F_contig8751.16932.1 ID=mRNA_Ecto-sp9_F_contig8751.16932.1|Name=mRNA_Ecto-sp9_F_contig8751.16932.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1128bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8751:171..2311+ (Ectocarpus species9 EcSCA_722f female)back to top |