mRNA_Ecto-sp9_F_contig8746.16926.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig8746.16926.1
Unique NamemRNA_Ecto-sp9_F_contig8746.16926.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig8746.16926.1 vs.
Match: WD (repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB06_ECTSI)

HSP 1 Score: 213 bits (542), Expect = 7.950e-66
Identity = 105/106 (99.06%), Postives = 105/106 (99.06%), Query Frame = 1 
Query:    7 GIMLEYELRDRSREMKEIDLLHLSPESDVDVLVNQIVFEEPLISENRKPQLRRLVHKLIEKLETNECDDFYLFKILRAHILPLTNCAFNKSGDKFITGSYDRTCKV 324
            GIMLEYELRDRSREMKEIDLLHLSPESDVDVLVNQIVFEEPLISENRKPQLRRLVHKLIEKLETNECDDFYLFKILRAHILPLTNCAFNKSGDKFITGSYDRTCK 
Sbjct:   14 GIMLEYELRDRSREMKEIDLLHLSPESDVDVLVNQIVFEEPLISENRKPQLRRLVHKLIEKLETNECDDFYLFKILRAHILPLTNCAFNKSGDKFITGSYDRTCKT 119
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BLAST of mRNA_Ecto-sp9_F_contig8746.16926.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UT19_9STRA)

HSP 1 Score: 196 bits (498), Expect = 2.610e-59
Identity = 94/106 (88.68%), Postives = 104/106 (98.11%), Query Frame = 1 
Query:    7 GIMLEYELRDRSREMKEIDLLHLSPESDVDVLVNQIVFEEPLISENRKPQLRRLVHKLIEKLETNECDDFYLFKILRAHILPLTNCAFNKSGDKFITGSYDRTCKV 324
            GI+LEYELRD++REMKEIDLLHL+PE+DVDVLVNQ+VFEEPLISENRKPQLRRL++KLIEKLE +E +DFYLFKILRAHILPLTNCAFNKSGDKFITGSYDRTCKV
Sbjct:   14 GIILEYELRDKTREMKEIDLLHLTPETDVDVLVNQVVFEEPLISENRKPQLRRLIYKLIEKLENHEANDFYLFKILRAHILPLTNCAFNKSGDKFITGSYDRTCKV 119
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BLAST of mRNA_Ecto-sp9_F_contig8746.16926.1 vs.
Match: Wd (domain-containing protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AP24_PLAHL)

HSP 1 Score: 184 bits (467), Expect = 1.260e-57
Identity = 89/106 (83.96%), Postives = 101/106 (95.28%), Query Frame = 1 
Query:    7 GIMLEYELRDRSREMKEIDLLHLSPESDVDVLVNQIVFEEPLISENRKPQLRRLVHKLIEKLETNECDDFYLFKILRAHILPLTNCAFNKSGDKFITGSYDRTCKV 324
            GI+LEYELRD +REMKEIDLLHL+ ESD++VL+NQIV EEPLIS++RKPQLRRL++KLIEKLE N+ +DFYLFKILRAHILPLTNCAFNKSGDKFITGSYDRTCKV
Sbjct:   14 GIILEYELRDGTREMKEIDLLHLNAESDIEVLINQIVSEEPLISDSRKPQLRRLLYKLIEKLEVNDSNDFYLFKILRAHILPLTNCAFNKSGDKFITGSYDRTCKV 119
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BLAST of mRNA_Ecto-sp9_F_contig8746.16926.1 vs.
Match: WD (domaincontaining protein putative n=25 Tax=Oomycota TaxID=4762 RepID=F0WZ26_9STRA)

HSP 1 Score: 191 bits (485), Expect = 2.240e-57
Identity = 93/106 (87.74%), Postives = 102/106 (96.23%), Query Frame = 1 
Query:    7 GIMLEYELRDRSREMKEIDLLHLSPESDVDVLVNQIVFEEPLISENRKPQLRRLVHKLIEKLETNECDDFYLFKILRAHILPLTNCAFNKSGDKFITGSYDRTCKV 324
            GI+LEYELRD +REMKEIDLLHL+ ESD+DVLVNQIVFEEPL+SE+RKPQLRRL++KLIEKLE NE +DFYLFKILRAHILPLTNCAFNKSGDKFITGSYDRTCKV
Sbjct:   14 GIILEYELRDGTREMKEIDLLHLTAESDIDVLVNQIVFEEPLLSESRKPQLRRLIYKLIEKLEINESNDFYLFKILRAHILPLTNCAFNKSGDKFITGSYDRTCKV 119
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BLAST of mRNA_Ecto-sp9_F_contig8746.16926.1 vs.
Match: Uncharacterized (protein n=5 Tax=Oomycota TaxID=4762 RepID=A0A024GRH3_9STRA)

HSP 1 Score: 191 bits (485), Expect = 2.240e-57
Identity = 93/106 (87.74%), Postives = 102/106 (96.23%), Query Frame = 1 
Query:    7 GIMLEYELRDRSREMKEIDLLHLSPESDVDVLVNQIVFEEPLISENRKPQLRRLVHKLIEKLETNECDDFYLFKILRAHILPLTNCAFNKSGDKFITGSYDRTCKV 324
            GI+LEYELRD +REMKEIDLLHL+ ESD+DVLVNQIVFEEPL+SE+RKPQLRRL++KLIEKLE NE +DFYLFKILRAHILPLTNCAFNKSGDKFITGSYDRTCKV
Sbjct:   14 GIILEYELRDGTREMKEIDLLHLTAESDIDVLVNQIVFEEPLLSESRKPQLRRLIYKLIEKLEINESNDFYLFKILRAHILPLTNCAFNKSGDKFITGSYDRTCKV 119
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BLAST of mRNA_Ecto-sp9_F_contig8746.16926.1 vs.
Match: Uncharacterized (protein n=13 Tax=Phytophthora TaxID=4783 RepID=W2HVY0_PHYPR)

HSP 1 Score: 189 bits (481), Expect = 8.890e-57
Identity = 92/106 (86.79%), Postives = 102/106 (96.23%), Query Frame = 1 
Query:    7 GIMLEYELRDRSREMKEIDLLHLSPESDVDVLVNQIVFEEPLISENRKPQLRRLVHKLIEKLETNECDDFYLFKILRAHILPLTNCAFNKSGDKFITGSYDRTCKV 324
            GI+LEYELRD +REMKEIDLLHL+ ESD++VLVNQIVFEEPLISE+RKPQLRRL++KLIEKLE N+ +DFYLFKILRAHILPLTNCAFNKSGDKFITGSYDRTCKV
Sbjct:   14 GIILEYELRDGTREMKEIDLLHLTAESDIEVLVNQIVFEEPLISESRKPQLRRLIYKLIEKLEVNDSNDFYLFKILRAHILPLTNCAFNKSGDKFITGSYDRTCKV 119
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BLAST of mRNA_Ecto-sp9_F_contig8746.16926.1 vs.
Match: Hypothetical (protein n=3 Tax=Pinguiochrysidaceae TaxID=1004268 RepID=A0A7R9U295_9STRA)

HSP 1 Score: 187 bits (474), Expect = 9.870e-56
Identity = 91/106 (85.85%), Postives = 99/106 (93.40%), Query Frame = 1 
Query:    7 GIMLEYELRDRSREMKEIDLLHLSPESDVDVLVNQIVFEEPLISENRKPQLRRLVHKLIEKLETNECDDFYLFKILRAHILPLTNCAFNKSGDKFITGSYDRTCKV 324
            GI+LEYELRDRSRE KEIDLLHL+ E+D++VLVNQIVFEEPL+SENRKPQLRRL++KLIEK ET    DFYLFKILRAHILPLTNCAFNKSGDKFITGSYDRTCKV
Sbjct:   14 GIILEYELRDRSREHKEIDLLHLTQETDIEVLVNQIVFEEPLVSENRKPQLRRLIYKLIEKQETQTSSDFYLFKILRAHILPLTNCAFNKSGDKFITGSYDRTCKV 119
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BLAST of mRNA_Ecto-sp9_F_contig8746.16926.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ochrophyta TaxID=2696291 RepID=F0YJL8_AURAN)

HSP 1 Score: 187 bits (475), Expect = 1.350e-55
Identity = 87/106 (82.08%), Postives = 101/106 (95.28%), Query Frame = 1 
Query:    7 GIMLEYELRDRSREMKEIDLLHLSPESDVDVLVNQIVFEEPLISENRKPQLRRLVHKLIEKLETNECDDFYLFKILRAHILPLTNCAFNKSGDKFITGSYDRTCKV 324
            G++LEYE+RD++RE KEIDLLHL+PE+DV+VLVNQ+ FEEPLISENRKPQLRRL++KLIEKLE+NE  D+YLFKILRAHILPLTNCAFNK GDKFITGSYDRTCK+
Sbjct:   14 GVILEYEMRDKTRETKEIDLLHLTPETDVEVLVNQVTFEEPLISENRKPQLRRLIYKLIEKLESNENSDYYLFKILRAHILPLTNCAFNKQGDKFITGSYDRTCKI 119
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BLAST of mRNA_Ecto-sp9_F_contig8746.16926.1 vs.
Match: Hypothetical (protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MF66_9STRA)

HSP 1 Score: 185 bits (469), Expect = 5.500e-55
Identity = 86/106 (81.13%), Postives = 101/106 (95.28%), Query Frame = 1 
Query:    7 GIMLEYELRDRSREMKEIDLLHLSPESDVDVLVNQIVFEEPLISENRKPQLRRLVHKLIEKLETNECDDFYLFKILRAHILPLTNCAFNKSGDKFITGSYDRTCKV 324
            G++LEYELRD +RE+KEIDLLHL+P++D++V+VNQIVFEEPLISE++KP LRRL++KLIEKLE NE  DF+LFKILRAHILPLTNCAFNKSGDKFITGSYDRTCKV
Sbjct:   14 GVILEYELRDHTRELKEIDLLHLTPDTDIEVIVNQIVFEEPLISESKKPHLRRLIYKLIEKLENNESSDFFLFKILRAHILPLTNCAFNKSGDKFITGSYDRTCKV 119
[Close]
BLAST of mRNA_Ecto-sp9_F_contig8746.16926.1 vs.
Match: Hypothetical (protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WUJ8_9STRA)

HSP 1 Score: 185 bits (470), Expect = 5.620e-55
Identity = 87/106 (82.08%), Postives = 100/106 (94.34%), Query Frame = 1 
Query:    7 GIMLEYELRDRSREMKEIDLLHLSPESDVDVLVNQIVFEEPLISENRKPQLRRLVHKLIEKLETNECDDFYLFKILRAHILPLTNCAFNKSGDKFITGSYDRTCKV 324
            G++LEYELRD++RE KEIDLLHL+PE+DV VLVNQI FEEPLISE+RKPQLRRL++KLIEKLE+N+  D+YLFKILRAHILPLTNCAFNK GDKFITGSYDRTCK+
Sbjct:   14 GVILEYELRDKNRETKEIDLLHLTPETDVQVLVNQITFEEPLISESRKPQLRRLIYKLIEKLESNDSSDYYLFKILRAHILPLTNCAFNKQGDKFITGSYDRTCKI 119
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8746.16926.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
WD7.950e-6699.06repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID... [more]
Hypothetical2.610e-5988.68protein n=1 Tax=Fibrocapsa japonica TaxID=94617 Re... [more]
Wd1.260e-5783.96domain-containing protein n=1 Tax=Plasmopara halst... [more]
WD2.240e-5787.74domaincontaining protein putative n=25 Tax=Oomycot... [more]
Uncharacterized2.240e-5787.74protein n=5 Tax=Oomycota TaxID=4762 RepID=A0A024GR... [more]
Uncharacterized8.890e-5786.79protein n=13 Tax=Phytophthora TaxID=4783 RepID=W2H... [more]
Hypothetical9.870e-5685.85protein n=3 Tax=Pinguiochrysidaceae TaxID=1004268 ... [more]
Uncharacterized1.350e-5582.08protein n=2 Tax=Ochrophyta TaxID=2696291 RepID=F0Y... [more]
Hypothetical5.500e-5581.13protein n=1 Tax=Spumella elongata TaxID=89044 RepI... [more]
Hypothetical5.620e-5582.08protein n=1 Tax=Pelagomonas calceolata TaxID=35677... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8746contigEcto-sp9_F_contig8746:413..1632 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score215.3
Seed ortholog evalue1.4e-53
Seed eggNOG ortholog2880.D8LB06
Preferred nameDAW1
KEGG koko:K12662,ko:K19760
KEGG Pathwayko03040,map03040
KEGG ModuleM00354
GOsGO:0000226,GO:0000375,GO:0000377,GO:0000398,GO:0001539,GO:0001578,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005737,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007275,GO:0007368,GO:0007389,GO:0008150,GO:0008152,GO:0008380,GO:0009799,GO:0009855,GO:0009987,GO:0010467,GO:0015030,GO:0016043,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0017069,GO:0017070,GO:0022607,GO:0030030,GO:0030031,GO:0030532,GO:0030621,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0034622,GO:0034641,GO:0035082,GO:0040011,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044782,GO:0046483,GO:0046540,GO:0048856,GO:0048870,GO:0051179,GO:0051674,GO:0060271,GO:0060285,GO:0065003,GO:0070013,GO:0070286,GO:0070925,GO:0071001,GO:0071005,GO:0071011,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0097525,GO:0097526,GO:0120031,GO:0120036,GO:0120114,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.U4 snRNA binding
EggNOG OGsKOG0272@1,KOG0272@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041,ko04812
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionWD repeat protein
Ec32 orthologEc-27_005730.1
Exons3
Model size324
Cds size324
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8746.16926.1prot_Ecto-sp9_F_contig8746.16926.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig8746 413..1632 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930922.1509702-CDS-Ecto-sp9_F_contig8746:412..5081622930922.1509702-CDS-Ecto-sp9_F_contig8746:412..508Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8746 413..508 -
1692278950.0095532-CDS-Ecto-sp9_F_contig8746:412..5081692278950.0095532-CDS-Ecto-sp9_F_contig8746:412..508Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8746 413..508 -
1622930922.164479-CDS-Ecto-sp9_F_contig8746:734..8791622930922.164479-CDS-Ecto-sp9_F_contig8746:734..879Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8746 735..879 -
1692278950.0293787-CDS-Ecto-sp9_F_contig8746:734..8791692278950.0293787-CDS-Ecto-sp9_F_contig8746:734..879Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8746 735..879 -
1622930922.1891246-CDS-Ecto-sp9_F_contig8746:1549..16321622930922.1891246-CDS-Ecto-sp9_F_contig8746:1549..1632Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8746 1550..1632 -
1692278950.0412498-CDS-Ecto-sp9_F_contig8746:1549..16321692278950.0412498-CDS-Ecto-sp9_F_contig8746:1549..1632Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8746 1550..1632 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig8746.16926.1

>prot_Ecto-sp9_F_contig8746.16926.1 ID=prot_Ecto-sp9_F_contig8746.16926.1|Name=mRNA_Ecto-sp9_F_contig8746.16926.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=108bp
MVGIMLEYELRDRSREMKEIDLLHLSPESDVDVLVNQIVFEEPLISENRK
PQLRRLVHKLIEKLETNECDDFYLFKILRAHILPLTNCAFNKSGDKFITG
SYDRTCKV
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mRNA from alignment at Ecto-sp9_F_contig8746:413..1632-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig8746.16926.1 ID=mRNA_Ecto-sp9_F_contig8746.16926.1|Name=mRNA_Ecto-sp9_F_contig8746.16926.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1220bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8746:413..1632- (Ectocarpus species9 EcSCA_722f female)
ATGGTAGGGATCATGCTTGAATACGAGCTTCGAGATAGGTCGCGGGAGAT
GAAGGAGATCGATCTTTTGCACCTATCTCCAGAGTAAGCTGGGTTATCTC
GAAAGGGTAGTCTTTCTGTGTGTGTATCTATTTTTCCAGTTATACTACTC
TGTCTCTTTTGATGATGAACCACGAGTAGAGTGTGGACCTCTACATAAAA
CGTGCCCTATTATTCCATGCACGTTGTGGGATAAGTAAGTGTAGACGCAG
TGTAGGAGGTATGTATGTATGTGAAACAAGGTACAGCAGACCGTAGCGGC
CCACCTATAAGACAAAAAATCTGTTGAGAAAATGCAAGGTAACAGACTCC
CGACACTTTACACAACATGGGGCAGTGGATCCTACACGATCTGTAGTCCA
CATCTAAATTTGTATCCATGTACATACATGGCATGTGGTAGGCTAGCTCT
CTCGACGGCGGCGACCAAAAAACGGCAAGACATGATGCACATATGCACAT
GCGTATGCTACGTCAGCTCGTGTTTTATATAGTCAGAGCACGTAACGTTC
AAATCCCGGCACCAAGACCCAGCAAACTTGTTTTTGTCCTCATGTTCCTT
CCTCATCTAGCCCCCACCCCCCACCCCCGGTATCACAACCAGGGTAATCC
CAACGACTACAACAATGTGAAAATCAATAACGCTCAATGTTGTTGCATGC
CCCCCACCCGATTCTCCTGCGTCACGCTGCGACCGGGTGACGCTGACGAG
CAGAAGTGACGTAGACGTGCTTGTTAACCAGATCGTGTTCGAGGAACCGC
TGATTTCGGAGAACCGCAAGCCGCAGCTGCGGAGGCTGGTCCACAAGCTG
ATCGAGAAGCTGGAAACCAACGAGTGCGACGATTTCTACCTCTTCAAGGT
GAACCCAGAACCTCGATAAAAAAAAGACATATCCTGGCTGGTAAGTTCCT
AGGCAGACACCTGTTCTGCGCGTTCGACAAGCTTGCTCGGGTTGGAGGGT
TGTTTTGGAAACAGCGATGATCTAATACCATTGGCGAGGGGCCCGAGAGA
GTCGACGGTTGAACGATGCAGGCCCTTCCCCCCATCCCTCCTGGTGCCCA
CACCGGTGTGTTAACAATTCGCAGATACTTCGGGCTCACATTCTGCCCTT
GACGAACTGCGCCTTCAACAAATCTGGAGACAAGTTCATCACGGGATCGT
ACGACCGCACGTGTAAGGTG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8746:413..1632-

>mRNA_Ecto-sp9_F_contig8746.16926.1 ID=mRNA_Ecto-sp9_F_contig8746.16926.1|Name=mRNA_Ecto-sp9_F_contig8746.16926.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=648bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8746:413..1632- (Ectocarpus species9 EcSCA_722f female)
ATGGTAGGGATCATGCTTGAATACGAGCTTCGAGATAGGTCGCGGGAGAT
GAAGGAGATCGATCTTTTGCACCTATCTCCAGAATGGTAGGGATCATGCT
TGAATACGAGCTTCGAGATAGGTCGCGGGAGATGAAGGAGATCGATCTTT
TGCACCTATCTCCAGAAAGTGACGTAGACGTGCTTGTTAACCAGATCGTG
TTCGAGGAACCGCTGATTTCGGAGAACCGCAAGCCGCAGCTGCGGAGGCT
GGTCCACAAGCTGATCGAGAAGCTGGAAACCAACGAGTGCGACGATTTCT
ACCTCTTCAAGAAGTGACGTAGACGTGCTTGTTAACCAGATCGTGTTCGA
GGAACCGCTGATTTCGGAGAACCGCAAGCCGCAGCTGCGGAGGCTGGTCC
ACAAGCTGATCGAGAAGCTGGAAACCAACGAGTGCGACGATTTCTACCTC
TTCAAGATACTTCGGGCTCACATTCTGCCCTTGACGAACTGCGCCTTCAA
CAAATCTGGAGACAAGTTCATCACGGGATCGTACGACCGCACGTGTAAGG
TGATACTTCGGGCTCACATTCTGCCCTTGACGAACTGCGCCTTCAACAAA
TCTGGAGACAAGTTCATCACGGGATCGTACGACCGCACGTGTAAGGTG
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