mRNA_Ecto-sp9_F_contig8743.16925.1 (mRNA) Ectocarpus species9 EcSCA_722f female
|
Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig8743.16925.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ44_ECTSI) HSP 1 Score: 251 bits (641), Expect = 1.400e-84 Identity = 118/122 (96.72%), Postives = 120/122 (98.36%), Query Frame = 1
Query: 1 VGYDPKRSKVSDDKLADFIRSAPTGDLKEVPGIAARGAEILADGEGDDKVTNTYQLIGKFLALRGPDKTDHEVDSVEHCDKFWFWLQAKGINSNRSGIVNAIAEKVNTWIPGIYDADSYTDT 366
VGYDPKRSKVSDDKLA+FIRSA TGDL EVPGIAARGAEILADGEGDDKVTNTYQLIGKFLALRGPDKTDHEVDSVEHCDKFW+WLQAKGINSNRSGIVNAIAEKVNTWIPGIYDADSYTDT
Sbjct: 4 VGYDPKRSKVSDDKLAEFIRSAVTGDLTEVPGIAARGAEILADGEGDDKVTNTYQLIGKFLALRGPDKTDHEVDSVEHCDKFWYWLQAKGINSNRSGIVNAIAEKVNTWIPGIYDADSYTDT 125
BLAST of mRNA_Ecto-sp9_F_contig8743.16925.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4N7_9STRA) HSP 1 Score: 172 bits (437), Expect = 1.720e-53 Identity = 77/119 (64.71%), Postives = 93/119 (78.15%), Query Frame = 1
Query: 1 VGYDPKRSKVSDDKLADFIRSAPTGDLKEVPGIAARGAEILADGEGDDKVTNTYQLIGKFLALRGPDKTDHEVDSVEHCDKFWFWLQAKGINSNRSGIVNAIAEKVNTWIPGIYDADSY 357
GYDPKRSKV+D+KLA+FIR TG+L EVPGI + LA GEG +KV NTYQLIGKFL+L+G D + + ++EHCD+FW+WL+ GI+S RSGIVNAIAEK NTWIPGIYD D Y
Sbjct: 5 AGYDPKRSKVTDEKLAEFIRQPITGELTEVPGIGPAAVKKLAAGEGSNKVANTYQLIGKFLSLKGGDDSGKTIQTIEHCDRFWYWLKEMGISSYRSGIVNAIAEKCNTWIPGIYDEDQY 123
BLAST of mRNA_Ecto-sp9_F_contig8743.16925.1 vs.
Match: Uncharacterized (protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0QZN8_THAOC) HSP 1 Score: 168 bits (426), Expect = 9.270e-52 Identity = 76/120 (63.33%), Postives = 95/120 (79.17%), Query Frame = 1
Query: 4 GYDPKRSKVSDDKLADFIRSAPTGDLKEVPGIAARGAEILADGEGDDKVTNTYQLIGKFLALRGPDKTDHEVDSVEHCDKFWFWLQAKGINSNRSGIVNAIAEKVNTWIPGIYDADSYTD 363
GYDPKRS+VSDD L DFIR+ GD+ EVPGI A+ LA+GE D+ +TNTYQLIGKFL L+GPD D++V+S+EHC+KFW+WLQ K I+++RS IV AIA KVN +PG+YDAD Y D
Sbjct: 5 GYDPKRSRVSDDSLMDFIRAQVQGDITEVPGIGPAAAKKLAEGEHDECITNTYQLIGKFLMLKGPDTDDNKVESMEHCEKFWYWLQDKQISAHRSAIVKAIAMKVNGLLPGVYDADLYDD 124
BLAST of mRNA_Ecto-sp9_F_contig8743.16925.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4V0_9STRA) HSP 1 Score: 162 bits (411), Expect = 2.090e-49 Identity = 70/120 (58.33%), Postives = 95/120 (79.17%), Query Frame = 1
Query: 4 GYDPKRSKVSDDKLADFIRSAPTGDLKEVPGIAARGAEILADGEGDDKVTNTYQLIGKFLALRGPDKTDHEVDSVEHCDKFWFWLQAKGINSNRSGIVNAIAEKVNTWIPGIYDADSYTD 363
GYDPKRS +S+D LA F+R+ TGD+ +VPGI A LA + D+ +TN++QLIGKFL ++GPD + EVD V HC+KFW++L++KG+NS+RSGIV+AIAEK+NT IPGIYD+D + D
Sbjct: 4 GYDPKRSSISEDALATFLRNPITGDITQVPGIGKAAAAALASADDDEPITNSFQLIGKFLLMKGPDTEEGEVDCVMHCNKFWYYLKSKGVNSHRSGIVHAIAEKINTMIPGIYDSDVFED 123
BLAST of mRNA_Ecto-sp9_F_contig8743.16925.1 vs.
Match: Hypothetical (protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R0A3_9STRA) HSP 1 Score: 159 bits (401), Expect = 7.160e-48 Identity = 71/122 (58.20%), Postives = 91/122 (74.59%), Query Frame = 1
Query: 1 VGYDPKRSKVSDDKLADFIRSAPTGDLKEVPGIAARGAEILADGEGD-DKVTNTYQLIGKFLALRGPDKTDHEVDSVEHCDKFWFWLQAKGINSNRSGIVNAIAEKVNTWIPGIYDADSYTD 363
+GYDP RSKVSD + DF+RS TGD+ EVPGI LA G+ + D++TNT+QLIGKFL L+GPD+ D ++D +EH +KFW+WL+ KGI S+RS IV AI EK+NT IPGIYDA Y +
Sbjct: 5 LGYDPSRSKVSDSTMTDFLRSQITGDVTEVPGIGPAAKRALAGGDDESDRITNTFQLIGKFLMLKGPDEDDMKIDCMEHMEKFWYWLKQKGIKSHRSAIVKAIGEKINTMIPGIYDASIYAE 126
BLAST of mRNA_Ecto-sp9_F_contig8743.16925.1 vs.
Match: Hypothetical (protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3Z2B1_9STRA) HSP 1 Score: 155 bits (392), Expect = 1.580e-46 Identity = 76/124 (61.29%), Postives = 96/124 (77.42%), Query Frame = 1
Query: 4 GYDPKRSKVSDDKLADFIRSAPTGDLKEVPGIAARGAEILA---DGEGD-DKVTNTYQLIGKFLALRGPDKTDHEVDSVEHCDKFWFWLQAKGINSNRSGIVNAIAEKVNTWIPGIYDADSYTD 363
GYDP+RSKVSDD A F R A +G+L +VPGI A+ L DGE + D+VTNTYQLIGKFL L+GPD+ ++V+SVEH +KFW++L+ KGI+S+RSGIV AIAEKVNT +PGIYDA Y +
Sbjct: 4 GYDPRRSKVSDDTFASFQRDALSGELTDVPGIGPAAAKKLGQIGDGETEFDRVTNTYQLIGKFLMLKGPDEDGNKVESVEHMEKFWWYLKQKGISSHRSGIVRAIAEKVNTMLPGIYDASEYEE 127
BLAST of mRNA_Ecto-sp9_F_contig8743.16925.1 vs.
Match: Hypothetical (protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZJR7_TRICV) HSP 1 Score: 155 bits (393), Expect = 1.880e-46 Identity = 70/119 (58.82%), Postives = 89/119 (74.79%), Query Frame = 1
Query: 1 VGYDPKRSKVSDDKLADFIRSAPTGDLKEVPGIAARGAEILADGEGDDKVTNTYQLIGKFLALRGPDKTDHEVDSVEHCDKFWFWLQAKGINSNRSGIVNAIAEKVNTWIPGIYDADSY 357
GYDP+RS+VS+D L DF+R TG++ EVPGI A+ LA+G+ DD+VTNT+QLIGKF+ L+GPD +H+V EH KFW WL K I S+RS IV AIAEK+N +PGIYDAD+Y
Sbjct: 25 TGYDPRRSRVSEDTLNDFLRGKITGEITEVPGIGPAAAKRLAEGDDDDRVTNTWQLIGKFMMLKGPDDDEHKVGPGEHMQKFWHWLAEKEIKSHRSAIVKAIAEKMNQMMPGIYDADAY 143
BLAST of mRNA_Ecto-sp9_F_contig8743.16925.1 vs.
Match: Hypothetical (protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MQ62_9STRA) HSP 1 Score: 151 bits (382), Expect = 7.370e-45 Identity = 74/124 (59.68%), Postives = 95/124 (76.61%), Query Frame = 1
Query: 4 GYDPKRSKVSDDKLADFIRSAPTGDLKEVPGI---AARGAEILADGEGD-DKVTNTYQLIGKFLALRGPDKTDHEVDSVEHCDKFWFWLQAKGINSNRSGIVNAIAEKVNTWIPGIYDADSYTD 363
GYDP+RSKV++ A+F R TG+L +VPGI AAR + D E D D++TNTYQLIGKFL L+GPD+ H+V+S+EH +KFW++L+ KGI+S+RSGIV AIAEKVNT IPGIYDA Y +
Sbjct: 13 GYDPRRSKVNESTFANFQREQLTGELTDVPGIGPAAARKLGEIGDEEKDSDRITNTYQLIGKFLMLKGPDEDGHKVESMEHMEKFWWFLKEKGISSHRSGIVRAIAEKVNTMIPGIYDASEYDE 136
BLAST of mRNA_Ecto-sp9_F_contig8743.16925.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CPA9_PYTOL) HSP 1 Score: 147 bits (371), Expect = 1.870e-43 Identity = 71/120 (59.17%), Postives = 89/120 (74.17%), Query Frame = 1
Query: 4 GYDPKRSKVSDDKLADFIRSAPTGDLKEVPGIAARGAEILADGEGDDKVTNTYQLIGKFLALRGP--DKTDHEVDSVEHCDKFWFWLQAKGINSNRSGIVNAIAEKVNTWIPGIYDADSY 357
GYDP++S+V+ D LADF+R+ TGDLKEVPGI A LA GE D+V NT+QLIGKFL L+ + D +D +HC+ FWFWL+AKGI++ RSGIV AIAEKVNT +PGIYDA +
Sbjct: 4 GYDPQKSRVAVDTLADFLRAPLTGDLKEVPGIGDIAAGKLAAGEDGDRVENTFQLIGKFLMLKASLEENDDGLIDCADHCNAFWFWLKAKGISAYRSGIVMAIAEKVNTMLPGIYDAAEF 123
BLAST of mRNA_Ecto-sp9_F_contig8743.16925.1 vs.
Match: Uncharacterized (protein AlNc14C194G8527 n=2 Tax=Albugo TaxID=65356 RepID=F0WQ47_9STRA) HSP 1 Score: 146 bits (369), Expect = 3.770e-43 Identity = 67/120 (55.83%), Postives = 90/120 (75.00%), Query Frame = 1
Query: 4 GYDPKRSKVSDDKLADFIRSAPTGDLKEVPGIAARGAEILADGEGDDKVTNTYQLIGKFLALRGPDKTDHE--VDSVEHCDKFWFWLQAKGINSNRSGIVNAIAEKVNTWIPGIYDADSY 357
GYDP++S++++D+LADF+R+ TGDL EVPGI + LA GE +D+V NTYQLIGKFL L+ D+ + E ++ HCD FW+WL++K I + RSGIV AIAEKVNT +PGIYDA +
Sbjct: 4 GYDPQKSRIAEDRLADFLRAPLTGDLLEVPGIGSAAISKLASGEEEDRVCNTYQLIGKFLMLKKNDEENEEELIECSAHCDAFWYWLKSKQITAYRSGIVMAIAEKVNTMLPGIYDAADF 123 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8743.16925.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig8743.16925.1 >prot_Ecto-sp9_F_contig8743.16925.1 ID=prot_Ecto-sp9_F_contig8743.16925.1|Name=mRNA_Ecto-sp9_F_contig8743.16925.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=120bp MIPSGVRSATTSSPTSSAPPPRATSRRCPASQQEGRRSWRTERETTRSPTback to top mRNA from alignment at Ecto-sp9_F_contig8743:2994..4586+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig8743.16925.1 ID=mRNA_Ecto-sp9_F_contig8743.16925.1|Name=mRNA_Ecto-sp9_F_contig8743.16925.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1593bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8743:2994..4586+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8743:2994..4586+ >mRNA_Ecto-sp9_F_contig8743.16925.1 ID=mRNA_Ecto-sp9_F_contig8743.16925.1|Name=mRNA_Ecto-sp9_F_contig8743.16925.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=720bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8743:2994..4586+ (Ectocarpus species9 EcSCA_722f female)back to top |