mRNA_Ecto-sp9_F_contig8740.16923.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig8740.16923.1 vs.
Match: Trehalose-6-phosphate (phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G992_ECTSI) HSP 1 Score: 486 bits (1250), Expect = 1.880e-168 Identity = 315/326 (96.63%), Postives = 316/326 (96.93%), Query Frame = 1
Query: 1 HENRVASLGPASASCCGQAQPGAEAPPARTDAAVSSSNGEVAANGNTGDGEAGASGCQEAGSGSXXXXXDEEGAGDDCGALEEVRHQVAQEYLPVMETIRDQLVAELKGIDKAEVEDNRFSVSIHYRNCARVDVPRVKEVVERVQARHERIRMGSGKEVFELQPDIAWDKGKAVLWLLDKLVMPMAQAPEEPAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-GDYDDEYSGRFFTIFIGDDKTDENAFRVLNGDMGEDRARHDGVGILVSEESRETNAAYTLRNPDEVASFLEKIAKLGSERCGSSSSR 975
H RVASLGPASASCCGQAQPGAEAPPARTD AVSSSNGEVAANGNTGDGEAGASGCQEAGSG XXXXX EGAG DCGALEEVRHQVAQEYLPVME IRDQL+AELKGIDKAEVEDNRFSVSIHYRNCARVDVPRVKEVVERVQARHERIRMGSGKEVFELQPDIAWDKGKAVLWLLDKLVMPMAQAPEEPAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GDYDDEYSGRFFTIFIGDDKTDENAFRVLNGDMGEDRARHDGVGILVSEESRETNAAYTLRNPDEVASFLEKIA LGSERCGSSSSR
Sbjct: 66 HMQRVASLGPASASCCGQAQPGAEAPPARTDTAVSSSNGEVAANGNTGDGEAGASGCQEAGSGXXXXXXXXEGAGGDCGALEEVRHQVAQEYLPVMENIRDQLIAELKGIDKAEVEDNRFSVSIHYRNCARVDVPRVKEVVERVQARHERIRMGSGKEVFELQPDIAWDKGKAVLWLLDKLVMPMAQAPEEPAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDYDDEYSGRFFTIFIGDDKTDENAFRVLNGDMGEDRARHDGVGILVSEESRETNAAYTLRNPDEVASFLEKIAMLGSERCGSSSSR 391
BLAST of mRNA_Ecto-sp9_F_contig8740.16923.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV42_9PHAE) HSP 1 Score: 264 bits (674), Expect = 2.730e-84 Identity = 144/158 (91.14%), Postives = 145/158 (91.77%), Query Frame = 1
Query: 1 HENRVASLGPASASCCGQAQPGAEAPPARTDAAVSSSNGEVAANGNTGDGEAGASGCQEAGSGSXXXXXDEEGAGDDCGALEEVRHQVAQEYLPVMETIRDQLVAELKGIDKAEVEDNRFSVSIHYRNCARVDVPRVKEVVERVQARHERIRMGSGKE 474
HENRVASLG ASASCC QAQPGAEAPPAR D AVSSSNGEV ANGNTGDGEA ASGCQEAGSG DEEGAG DCGALEEVRHQVAQEYLPVMETIRDQL+AELKGIDKAEVEDNRFSVSIHYRNCARVDVPRVKEVVERVQARHERIRMGSGKE
Sbjct: 21 HENRVASLGAASASCCRQAQPGAEAPPARADTAVSSSNGEVTANGNTGDGEARASGCQEAGSGGSGGAGDEEGAGGDCGALEEVRHQVAQEYLPVMETIRDQLIAELKGIDKAEVEDNRFSVSIHYRNCARVDVPRVKEVVERVQARHERIRMGSGKE 178
BLAST of mRNA_Ecto-sp9_F_contig8740.16923.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE57_9PHAE) HSP 1 Score: 173 bits (439), Expect = 7.810e-50 Identity = 85/87 (97.70%), Postives = 86/87 (98.85%), Query Frame = 1
Query: 715 GDYDDEYSGRFFTIFIGDDKTDENAFRVLNGDMGEDRARHDGVGILVSEESRETNAAYTLRNPDEVASFLEKIAKLGSERCGSSSSR 975
GD+DDEYSGRFFTIFIGDDKTDENAFRVLNGDMGEDRARHDGVGILVSEESRETNAAYTLRNPDEVASFLEKIAKLGSERCGSSS R
Sbjct: 39 GDFDDEYSGRFFTIFIGDDKTDENAFRVLNGDMGEDRARHDGVGILVSEESRETNAAYTLRNPDEVASFLEKIAKLGSERCGSSSGR 125
BLAST of mRNA_Ecto-sp9_F_contig8740.16923.1 vs.
Match: Trehalose-phosphatase-domain-containing (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP52_9STRA) HSP 1 Score: 185 bits (470), Expect = 9.700e-50 Identity = 118/240 (49.17%), Postives = 157/240 (65.42%), Query Frame = 1
Query: 235 GALEEVRHQVAQEYLPVMETIRDQLVAELKGIDKAEVEDNRFSVSIHYRNCARVDVPRVKEVVERVQARHERIRMGSGKEVFELQPDIAWDKGKAVLWLLDKLVMPMAQAPEEPAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDYDDEYSGRFFTIFIGDDKTDENAFRVLNGDMGEDRARHDGVGILVSEESRETNAAYTLRNPDEVASFLEKIAKLGSER 954
G EVR+QVA E+LPV++ +R +L ++ I AEVEDN +S+S+HYRNC R DVPR++++V++VQ+ IR+ +GKEVFELQPD+ W+KG AV+W+LD L + + A XXXXXXXXXXXXXXXX GD D G FTIFIGDD+TDE+AFRV + + + G+GILVSEESR+T+AAYTLRNPDEVA L+++ ++G R
Sbjct: 215 GGTVEVRYQVAGEFLPVLQQMRQELEEAVRDITGAEVEDNMYSISVHYRNCDRSDVPRIEKIVQQVQSSKSGIRLRNGKEVFELQPDVQWNKGSAVVWMLDMLGL----SRHSKADATSFQIAEREDAQAGXXXXXXXXXXXXXXXXLEEPEEASLVDSDGDEDAPPHGEVFTIFIGDDRTDEDAFRVFSAAGNCKKGQQPGLGILVSEESRDTHAAYTLRNPDEVAELLQRLVQVGETR 450
BLAST of mRNA_Ecto-sp9_F_contig8740.16923.1 vs.
Match: Trehalose-phosphatase-domain-containing (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEL8_9STRA) HSP 1 Score: 160 bits (405), Expect = 4.280e-40 Identity = 103/282 (36.52%), Postives = 139/282 (49.29%), Query Frame = 1
Query: 235 GALEEVRHQVAQEYLPVMETIRDQLVAELKGIDKAEVEDNRFSVSIHYRNCARVDVPRVKEVVERVQARHERIRMGSGKEVFELQPDIAWDKGKAVLWLLDKLVM--PMAQAPEEPAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG-------------------------------------DYDDEYSG---RFFTIFIGDDKTDENAFRVLNGDMGEDRARHDGVGILVSEESRETNAAYTLRNPDEVASFLEKIAKLGSER 954
G E VR+QVA E+LP M+ IR +L + + AEVEDN +S+S+HYRNC R +VPRV+E+V +VQA H+ IR+ GKEVFELQPD+ W+KG AV+W+L+ L + P +++P + D D Y + FTIFIGDDK DE+AF+V G+ A+ G+GILVSEESR T+AAYTL+NP EVA L ++ +G R
Sbjct: 203 GGPEGVRYQVAGEFLPAMQQIRQELEEAVGSVPGAEVEDNTYSISVHYRNCPRREVPRVREIVGQVQASHKGIRLRHGKEVFELQPDVHWNKGCAVVWMLEMLGLSAPASESPTDSGSGEGVHNGHFTEGGDVHNGFGLRNVRSHSAASSHTGDTCKKCEGAALSRTSSLDSSEPRLFRGERCVHGMQLRSQHEDTLNDEDEDAVYLSICQQVFTIFIGDDKADEDAFQVFTGESSS--AQQPGLGILVSEESRATHAAYTLKNPQEVAELLSRLVSIGQSR 482
BLAST of mRNA_Ecto-sp9_F_contig8740.16923.1 vs.
Match: Trehalose (6-phosphate phosphatase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TFM0_9STRA) HSP 1 Score: 147 bits (370), Expect = 1.600e-36 Identity = 92/233 (39.48%), Postives = 126/233 (54.08%), Query Frame = 1
Query: 244 EEVRHQVAQEYLPVMETIRDQLVAELKGIDKAEVEDNRFSVSIHYRNCARVDVPRVKEVVERVQARHERIRMGSGKEVFELQPDIAWDKGKAVLWLLDKLVMPMAQAPEEPAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDYDDEYSGRFFTIFIGDDKTDENAFRVLNGDMGEDRARHDGVGILVSEESRETNAAYTLRNPDEVASFLEKIAKL 942
E +R+QVA + LP + +RD L +L+GI+ A VEDN FSVS+HYRNCA DVP V E+V+ + IR G+GK VFEL+PDI WDKGKA++WLL L G +++E F I+IGDD TDE+AFR+ + EDRA +G+GI+V+ E++ T A Y+LRNP+EVA FL ++ +L
Sbjct: 170 ESMRYQVAADQLPDLARLRDTLTEQLRGIEGAAVEDNVFSVSVHYRNCAPDDVPAVYEIVQTARQAFPSIRFGTGKCVFELRPDITWDKGKAMVWLLQAL---------------------------------------------------------GLWEEE---DVFAIYIGDDTTDEDAFRIFHH---EDRA--EGIGIVVTAENKLTGAKYSLRNPEEVAVFLARLVEL 337
BLAST of mRNA_Ecto-sp9_F_contig8740.16923.1 vs.
Match: Trehalose (6-phosphate phosphatase (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YCQ3_HETAK) HSP 1 Score: 137 bits (345), Expect = 1.240e-33 Identity = 80/236 (33.90%), Postives = 117/236 (49.58%), Query Frame = 1
Query: 247 EVRHQVAQEYLPVMETIRDQLVAELKGIDKAEVEDNRFSVSIHYRNCARVDVPRVKEVVERVQARHERIRMGSGKEVFELQPDIAWDKGKAVLWLLDKLVMPMAQAPEEPAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDYDDEYSGRFFTIFIGDDKTDENAFRVLNGDMGEDRARHDGVGILVSEESRETNAAYTLRNPDEVASFLEKIAKLGSER 954
+V+++VA EYLP + +RD L A L G+ A VEDN +SV++HYRNCAR DVP +K +++ +A +E I + GK V+EL+P+ W KG+AV W+L+ P +F I+IGDDKTDE+AF+ L + G+GILVSEE + ++A ++LRNPDEV FL ++ +R
Sbjct: 133 DVKYEVAAEYLPALRALRDALRARLAGVAGAAVEDNVYSVTVHYRNCAREDVPELKSILDAEKAAYENIVITEGKMVYELRPNFVWHKGEAVRWILENQRFP-------------------------------------------------------------GNEYFGIYIGDDKTDEDAFQTLR-----EHPELGGLGILVSEEDQASHATFSLRNPDEVGQFLARLVAAEQQR 302
BLAST of mRNA_Ecto-sp9_F_contig8740.16923.1 vs.
Match: Trehalose (6-phosphate phosphatase n=2 Tax=Albugo TaxID=65356 RepID=F0W2V6_9STRA) HSP 1 Score: 130 bits (326), Expect = 2.490e-31 Identity = 79/235 (33.62%), Postives = 118/235 (50.21%), Query Frame = 1
Query: 250 VRHQVAQEYLPVMETIRDQLVAELKGIDKAEVEDNRFSVSIHYRNCARVDVPRVKEVVERVQARHERIRMGSGKEVFELQPDIAWDKGKAVLWLLDKLVMPMAQAPEEPAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDYDDEYSGRFFTIFIGDDKTDENAFRVLNGDMGEDRARHDGVGILVSEESRETNAAYTLRNPDEVASFLEKIAKLGSER 954
+++QVA E+L +E +RD L ++G+ A+VEDN FS+S+HYRN + ++ ++ V++R+ IR GK VFE +P I W+KGKA+LWLL +L + + FTI+IGDD TDE+AF VLN + + GVGILVS+ S+ET A+YTL++ EV +FL ++ K G +R
Sbjct: 108 IKNQVAVEFLKDLEALRDSLKEGVQGVSGAQVEDNLFSISLHYRNVDSTNQQKIADLAHEVESRYPSIRCNEGKMVFEYKPKIDWNKGKALLWLLRELKL------------------------------------------------------------DNQEDVFTIYIGDDTTDEDAFCVLN-----ETSNRSGVGILVSDHSKETGASYTLQDTIEVRAFLNELVKFGRDR 277
BLAST of mRNA_Ecto-sp9_F_contig8740.16923.1 vs.
Match: Trehalose (6-phosphate phosphatase n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A2V5RWW2_9BACT) HSP 1 Score: 129 bits (324), Expect = 2.840e-31 Identity = 83/228 (36.40%), Postives = 111/228 (48.68%), Query Frame = 1
Query: 250 VRHQVAQEYLPVMETIRDQLVAELKGIDKAEVEDNRFSVSIHYRNCARVDVPRVKEVVERVQARHERIRMGSGKEVFELQPDIAWDKGKAVLWLLDKLVMPMAQAPEEPAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDYDDEYSGRFFTIFIGDDKTDENAFRVLNGDMGEDRARHDGVGILVSEESRETNAAYTLRNPDEVASFLEKI 933
+R Q+A E+LP ++ +L A L GI A VE RFS++ HYRN DVP+V++ V V RH ++R +GK+V+EL PD+AWDKGKAVLWLL+ L + G I+IGDD+TDE+AFR L E R G+GILVSE+S+ T A Y+L+NP EV FL +
Sbjct: 94 LRRQMATEFLPALDLAEKELHAALDGISGARVERKRFSIAAHYRNVNENDVPKVEQAVGEVATRHRKLRRINGKKVYELLPDVAWDKGKAVLWLLEALGLER-------------------------------------------------------------GNIRPIYIGDDRTDEDAFRAL-----EQR----GIGILVSEQSQPTAARYSLKNPAEVERFLRAL 251
BLAST of mRNA_Ecto-sp9_F_contig8740.16923.1 vs.
Match: Trehalose (6-phosphate phosphatase n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A2V5XZF1_9BACT) HSP 1 Score: 127 bits (320), Expect = 1.120e-30 Identity = 84/240 (35.00%), Postives = 112/240 (46.67%), Query Frame = 1
Query: 223 GDDCGALEEVRHQVAQEYLPVMETIRDQLVAELKGIDKAEVEDNRFSVSIHYRNCARVDVPRVKEVVERVQARHERIRMGSGKEVFELQPDIAWDKGKAVLWLLDKLVMPMAQAPEEPAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDYDDEYSGRFFTIFIGDDKTDENAFRVLNGDMGEDRARHDGVGILVSEESRETNAAYTLRNPDEVASFLEKIAKL 942
G D L +R Q A E+LP ++ +L +L G A +E RFS++ HYRN DV +VKE V V RH +R GK+V+EL PDI WDKGKAVLWLL L + +A+ I+IGDD+TDE+AFR L + G+GILVSE+SR T A Y+L+NP EV SFL ++ ++
Sbjct: 85 GFDIAGLRGLRRQEATEFLPALDVAEKELREKLAGTAGALLERKRFSIAAHYRNVIESDVSKVKEAVNEVAMRHGELRKMEGKKVYELLPDIDWDKGKAVLWLLQNLGLDLAKV-------------------------------------------------------------CPIYIGDDRTDEDAFRAL---------KQYGIGILVSEQSRPTGAIYSLKNPMEVDSFLRELIEM 254 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8740.16923.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig8740.16923.1 >prot_Ecto-sp9_F_contig8740.16923.1 ID=prot_Ecto-sp9_F_contig8740.16923.1|Name=mRNA_Ecto-sp9_F_contig8740.16923.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=231bp METIRDQLVAELKGIDKAEVEDNRFSVSIHYRNCARVDVPRVKEVVERVQback to top mRNA from alignment at Ecto-sp9_F_contig8740:1743..5704+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig8740.16923.1 ID=mRNA_Ecto-sp9_F_contig8740.16923.1|Name=mRNA_Ecto-sp9_F_contig8740.16923.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3962bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8740:1743..5704+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8740:1743..5704+ >mRNA_Ecto-sp9_F_contig8740.16923.1 ID=mRNA_Ecto-sp9_F_contig8740.16923.1|Name=mRNA_Ecto-sp9_F_contig8740.16923.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1386bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8740:1743..5704+ (Ectocarpus species9 EcSCA_722f female)back to top |