mRNA_Ecto-sp9_F_contig8740.16923.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig8740.16923.1
Unique NamemRNA_Ecto-sp9_F_contig8740.16923.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig8740.16923.1 vs.
Match: Trehalose-6-phosphate (phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G992_ECTSI)

HSP 1 Score: 486 bits (1250), Expect = 1.880e-168
Identity = 315/326 (96.63%), Postives = 316/326 (96.93%), Query Frame = 1
Query:    1 HENRVASLGPASASCCGQAQPGAEAPPARTDAAVSSSNGEVAANGNTGDGEAGASGCQEAGSGSXXXXXDEEGAGDDCGALEEVRHQVAQEYLPVMETIRDQLVAELKGIDKAEVEDNRFSVSIHYRNCARVDVPRVKEVVERVQARHERIRMGSGKEVFELQPDIAWDKGKAVLWLLDKLVMPMAQAPEEPAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-GDYDDEYSGRFFTIFIGDDKTDENAFRVLNGDMGEDRARHDGVGILVSEESRETNAAYTLRNPDEVASFLEKIAKLGSERCGSSSSR 975
            H  RVASLGPASASCCGQAQPGAEAPPARTD AVSSSNGEVAANGNTGDGEAGASGCQEAGSG XXXXX  EGAG DCGALEEVRHQVAQEYLPVME IRDQL+AELKGIDKAEVEDNRFSVSIHYRNCARVDVPRVKEVVERVQARHERIRMGSGKEVFELQPDIAWDKGKAVLWLLDKLVMPMAQAPEEPAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GDYDDEYSGRFFTIFIGDDKTDENAFRVLNGDMGEDRARHDGVGILVSEESRETNAAYTLRNPDEVASFLEKIA LGSERCGSSSSR
Sbjct:   66 HMQRVASLGPASASCCGQAQPGAEAPPARTDTAVSSSNGEVAANGNTGDGEAGASGCQEAGSGXXXXXXXXEGAGGDCGALEEVRHQVAQEYLPVMENIRDQLIAELKGIDKAEVEDNRFSVSIHYRNCARVDVPRVKEVVERVQARHERIRMGSGKEVFELQPDIAWDKGKAVLWLLDKLVMPMAQAPEEPAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDYDDEYSGRFFTIFIGDDKTDENAFRVLNGDMGEDRARHDGVGILVSEESRETNAAYTLRNPDEVASFLEKIAMLGSERCGSSSSR 391          
BLAST of mRNA_Ecto-sp9_F_contig8740.16923.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV42_9PHAE)

HSP 1 Score: 264 bits (674), Expect = 2.730e-84
Identity = 144/158 (91.14%), Postives = 145/158 (91.77%), Query Frame = 1
Query:    1 HENRVASLGPASASCCGQAQPGAEAPPARTDAAVSSSNGEVAANGNTGDGEAGASGCQEAGSGSXXXXXDEEGAGDDCGALEEVRHQVAQEYLPVMETIRDQLVAELKGIDKAEVEDNRFSVSIHYRNCARVDVPRVKEVVERVQARHERIRMGSGKE 474
            HENRVASLG ASASCC QAQPGAEAPPAR D AVSSSNGEV ANGNTGDGEA ASGCQEAGSG      DEEGAG DCGALEEVRHQVAQEYLPVMETIRDQL+AELKGIDKAEVEDNRFSVSIHYRNCARVDVPRVKEVVERVQARHERIRMGSGKE
Sbjct:   21 HENRVASLGAASASCCRQAQPGAEAPPARADTAVSSSNGEVTANGNTGDGEARASGCQEAGSGGSGGAGDEEGAGGDCGALEEVRHQVAQEYLPVMETIRDQLIAELKGIDKAEVEDNRFSVSIHYRNCARVDVPRVKEVVERVQARHERIRMGSGKE 178          
BLAST of mRNA_Ecto-sp9_F_contig8740.16923.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE57_9PHAE)

HSP 1 Score: 173 bits (439), Expect = 7.810e-50
Identity = 85/87 (97.70%), Postives = 86/87 (98.85%), Query Frame = 1
Query:  715 GDYDDEYSGRFFTIFIGDDKTDENAFRVLNGDMGEDRARHDGVGILVSEESRETNAAYTLRNPDEVASFLEKIAKLGSERCGSSSSR 975
            GD+DDEYSGRFFTIFIGDDKTDENAFRVLNGDMGEDRARHDGVGILVSEESRETNAAYTLRNPDEVASFLEKIAKLGSERCGSSS R
Sbjct:   39 GDFDDEYSGRFFTIFIGDDKTDENAFRVLNGDMGEDRARHDGVGILVSEESRETNAAYTLRNPDEVASFLEKIAKLGSERCGSSSGR 125          
BLAST of mRNA_Ecto-sp9_F_contig8740.16923.1 vs.
Match: Trehalose-phosphatase-domain-containing (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP52_9STRA)

HSP 1 Score: 185 bits (470), Expect = 9.700e-50
Identity = 118/240 (49.17%), Postives = 157/240 (65.42%), Query Frame = 1
Query:  235 GALEEVRHQVAQEYLPVMETIRDQLVAELKGIDKAEVEDNRFSVSIHYRNCARVDVPRVKEVVERVQARHERIRMGSGKEVFELQPDIAWDKGKAVLWLLDKLVMPMAQAPEEPAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDYDDEYSGRFFTIFIGDDKTDENAFRVLNGDMGEDRARHDGVGILVSEESRETNAAYTLRNPDEVASFLEKIAKLGSER 954
            G   EVR+QVA E+LPV++ +R +L   ++ I  AEVEDN +S+S+HYRNC R DVPR++++V++VQ+    IR+ +GKEVFELQPD+ W+KG AV+W+LD L +    +    A                XXXXXXXXXXXXXXXX             GD D    G  FTIFIGDD+TDE+AFRV +      + +  G+GILVSEESR+T+AAYTLRNPDEVA  L+++ ++G  R
Sbjct:  215 GGTVEVRYQVAGEFLPVLQQMRQELEEAVRDITGAEVEDNMYSISVHYRNCDRSDVPRIEKIVQQVQSSKSGIRLRNGKEVFELQPDVQWNKGSAVVWMLDMLGL----SRHSKADATSFQIAEREDAQAGXXXXXXXXXXXXXXXXLEEPEEASLVDSDGDEDAPPHGEVFTIFIGDDRTDEDAFRVFSAAGNCKKGQQPGLGILVSEESRDTHAAYTLRNPDEVAELLQRLVQVGETR 450          
BLAST of mRNA_Ecto-sp9_F_contig8740.16923.1 vs.
Match: Trehalose-phosphatase-domain-containing (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEL8_9STRA)

HSP 1 Score: 160 bits (405), Expect = 4.280e-40
Identity = 103/282 (36.52%), Postives = 139/282 (49.29%), Query Frame = 1
Query:  235 GALEEVRHQVAQEYLPVMETIRDQLVAELKGIDKAEVEDNRFSVSIHYRNCARVDVPRVKEVVERVQARHERIRMGSGKEVFELQPDIAWDKGKAVLWLLDKLVM--PMAQAPEEPAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG-------------------------------------DYDDEYSG---RFFTIFIGDDKTDENAFRVLNGDMGEDRARHDGVGILVSEESRETNAAYTLRNPDEVASFLEKIAKLGSER 954
            G  E VR+QVA E+LP M+ IR +L   +  +  AEVEDN +S+S+HYRNC R +VPRV+E+V +VQA H+ IR+  GKEVFELQPD+ W+KG AV+W+L+ L +  P +++P +                                                                                     D D  Y     + FTIFIGDDK DE+AF+V  G+     A+  G+GILVSEESR T+AAYTL+NP EVA  L ++  +G  R
Sbjct:  203 GGPEGVRYQVAGEFLPAMQQIRQELEEAVGSVPGAEVEDNTYSISVHYRNCPRREVPRVREIVGQVQASHKGIRLRHGKEVFELQPDVHWNKGCAVVWMLEMLGLSAPASESPTDSGSGEGVHNGHFTEGGDVHNGFGLRNVRSHSAASSHTGDTCKKCEGAALSRTSSLDSSEPRLFRGERCVHGMQLRSQHEDTLNDEDEDAVYLSICQQVFTIFIGDDKADEDAFQVFTGESSS--AQQPGLGILVSEESRATHAAYTLKNPQEVAELLSRLVSIGQSR 482          
BLAST of mRNA_Ecto-sp9_F_contig8740.16923.1 vs.
Match: Trehalose (6-phosphate phosphatase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TFM0_9STRA)

HSP 1 Score: 147 bits (370), Expect = 1.600e-36
Identity = 92/233 (39.48%), Postives = 126/233 (54.08%), Query Frame = 1
Query:  244 EEVRHQVAQEYLPVMETIRDQLVAELKGIDKAEVEDNRFSVSIHYRNCARVDVPRVKEVVERVQARHERIRMGSGKEVFELQPDIAWDKGKAVLWLLDKLVMPMAQAPEEPAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDYDDEYSGRFFTIFIGDDKTDENAFRVLNGDMGEDRARHDGVGILVSEESRETNAAYTLRNPDEVASFLEKIAKL 942
            E +R+QVA + LP +  +RD L  +L+GI+ A VEDN FSVS+HYRNCA  DVP V E+V+  +     IR G+GK VFEL+PDI WDKGKA++WLL  L                                                         G +++E     F I+IGDD TDE+AFR+ +    EDRA  +G+GI+V+ E++ T A Y+LRNP+EVA FL ++ +L
Sbjct:  170 ESMRYQVAADQLPDLARLRDTLTEQLRGIEGAAVEDNVFSVSVHYRNCAPDDVPAVYEIVQTARQAFPSIRFGTGKCVFELRPDITWDKGKAMVWLLQAL---------------------------------------------------------GLWEEE---DVFAIYIGDDTTDEDAFRIFHH---EDRA--EGIGIVVTAENKLTGAKYSLRNPEEVAVFLARLVEL 337          
BLAST of mRNA_Ecto-sp9_F_contig8740.16923.1 vs.
Match: Trehalose (6-phosphate phosphatase (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YCQ3_HETAK)

HSP 1 Score: 137 bits (345), Expect = 1.240e-33
Identity = 80/236 (33.90%), Postives = 117/236 (49.58%), Query Frame = 1
Query:  247 EVRHQVAQEYLPVMETIRDQLVAELKGIDKAEVEDNRFSVSIHYRNCARVDVPRVKEVVERVQARHERIRMGSGKEVFELQPDIAWDKGKAVLWLLDKLVMPMAQAPEEPAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDYDDEYSGRFFTIFIGDDKTDENAFRVLNGDMGEDRARHDGVGILVSEESRETNAAYTLRNPDEVASFLEKIAKLGSER 954
            +V+++VA EYLP +  +RD L A L G+  A VEDN +SV++HYRNCAR DVP +K +++  +A +E I +  GK V+EL+P+  W KG+AV W+L+    P                                                                +F I+IGDDKTDE+AF+ L      +     G+GILVSEE + ++A ++LRNPDEV  FL ++     +R
Sbjct:  133 DVKYEVAAEYLPALRALRDALRARLAGVAGAAVEDNVYSVTVHYRNCAREDVPELKSILDAEKAAYENIVITEGKMVYELRPNFVWHKGEAVRWILENQRFP-------------------------------------------------------------GNEYFGIYIGDDKTDEDAFQTLR-----EHPELGGLGILVSEEDQASHATFSLRNPDEVGQFLARLVAAEQQR 302          
BLAST of mRNA_Ecto-sp9_F_contig8740.16923.1 vs.
Match: Trehalose (6-phosphate phosphatase n=2 Tax=Albugo TaxID=65356 RepID=F0W2V6_9STRA)

HSP 1 Score: 130 bits (326), Expect = 2.490e-31
Identity = 79/235 (33.62%), Postives = 118/235 (50.21%), Query Frame = 1
Query:  250 VRHQVAQEYLPVMETIRDQLVAELKGIDKAEVEDNRFSVSIHYRNCARVDVPRVKEVVERVQARHERIRMGSGKEVFELQPDIAWDKGKAVLWLLDKLVMPMAQAPEEPAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDYDDEYSGRFFTIFIGDDKTDENAFRVLNGDMGEDRARHDGVGILVSEESRETNAAYTLRNPDEVASFLEKIAKLGSER 954
            +++QVA E+L  +E +RD L   ++G+  A+VEDN FS+S+HYRN    +  ++ ++   V++R+  IR   GK VFE +P I W+KGKA+LWLL +L +                                                            +     FTI+IGDD TDE+AF VLN     + +   GVGILVS+ S+ET A+YTL++  EV +FL ++ K G +R
Sbjct:  108 IKNQVAVEFLKDLEALRDSLKEGVQGVSGAQVEDNLFSISLHYRNVDSTNQQKIADLAHEVESRYPSIRCNEGKMVFEYKPKIDWNKGKALLWLLRELKL------------------------------------------------------------DNQEDVFTIYIGDDTTDEDAFCVLN-----ETSNRSGVGILVSDHSKETGASYTLQDTIEVRAFLNELVKFGRDR 277          
BLAST of mRNA_Ecto-sp9_F_contig8740.16923.1 vs.
Match: Trehalose (6-phosphate phosphatase n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A2V5RWW2_9BACT)

HSP 1 Score: 129 bits (324), Expect = 2.840e-31
Identity = 83/228 (36.40%), Postives = 111/228 (48.68%), Query Frame = 1
Query:  250 VRHQVAQEYLPVMETIRDQLVAELKGIDKAEVEDNRFSVSIHYRNCARVDVPRVKEVVERVQARHERIRMGSGKEVFELQPDIAWDKGKAVLWLLDKLVMPMAQAPEEPAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDYDDEYSGRFFTIFIGDDKTDENAFRVLNGDMGEDRARHDGVGILVSEESRETNAAYTLRNPDEVASFLEKI 933
            +R Q+A E+LP ++    +L A L GI  A VE  RFS++ HYRN    DVP+V++ V  V  RH ++R  +GK+V+EL PD+AWDKGKAVLWLL+ L +                                                               G    I+IGDD+TDE+AFR L     E R    G+GILVSE+S+ T A Y+L+NP EV  FL  +
Sbjct:   94 LRRQMATEFLPALDLAEKELHAALDGISGARVERKRFSIAAHYRNVNENDVPKVEQAVGEVATRHRKLRRINGKKVYELLPDVAWDKGKAVLWLLEALGLER-------------------------------------------------------------GNIRPIYIGDDRTDEDAFRAL-----EQR----GIGILVSEQSQPTAARYSLKNPAEVERFLRAL 251          
BLAST of mRNA_Ecto-sp9_F_contig8740.16923.1 vs.
Match: Trehalose (6-phosphate phosphatase n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A2V5XZF1_9BACT)

HSP 1 Score: 127 bits (320), Expect = 1.120e-30
Identity = 84/240 (35.00%), Postives = 112/240 (46.67%), Query Frame = 1
Query:  223 GDDCGALEEVRHQVAQEYLPVMETIRDQLVAELKGIDKAEVEDNRFSVSIHYRNCARVDVPRVKEVVERVQARHERIRMGSGKEVFELQPDIAWDKGKAVLWLLDKLVMPMAQAPEEPAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDYDDEYSGRFFTIFIGDDKTDENAFRVLNGDMGEDRARHDGVGILVSEESRETNAAYTLRNPDEVASFLEKIAKL 942
            G D   L  +R Q A E+LP ++    +L  +L G   A +E  RFS++ HYRN    DV +VKE V  V  RH  +R   GK+V+EL PDI WDKGKAVLWLL  L + +A+                                                                I+IGDD+TDE+AFR L         +  G+GILVSE+SR T A Y+L+NP EV SFL ++ ++
Sbjct:   85 GFDIAGLRGLRRQEATEFLPALDVAEKELREKLAGTAGALLERKRFSIAAHYRNVIESDVSKVKEAVNEVAMRHGELRKMEGKKVYELLPDIDWDKGKAVLWLLQNLGLDLAKV-------------------------------------------------------------CPIYIGDDRTDEDAFRAL---------KQYGIGILVSEQSRPTGAIYSLKNPMEVDSFLRELIEM 254          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8740.16923.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Trehalose-6-phosphate1.880e-16896.63phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
Uncharacterized2.730e-8491.14protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized7.810e-5097.70protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Trehalose-phosphatase-domain-containing9.700e-5049.17protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Trehalose-phosphatase-domain-containing4.280e-4036.52protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Trehalose1.600e-3639.486-phosphate phosphatase n=2 Tax=Monodopsidaceae Ta... [more]
Trehalose1.240e-3333.906-phosphate phosphatase (Fragment) n=1 Tax=Heteros... [more]
Trehalose2.490e-3133.626-phosphate phosphatase n=2 Tax=Albugo TaxID=65356... [more]
Trehalose2.840e-3136.406-phosphate phosphatase n=1 Tax=Verrucomicrobia ba... [more]
Trehalose1.120e-3035.006-phosphate phosphatase n=1 Tax=Verrucomicrobia ba... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8740contigEcto-sp9_F_contig8740:1743..5704 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score344.4
Seed ortholog evalue4.2e-92
Seed eggNOG ortholog2880.D7G992
Preferred nameTPS1
KEGG rclassRC00005,RC00017,RC00049,RC02748
KEGG koko:K00697,ko:K01087,ko:K03937,ko:K16055
KEGG TC3.D.1.6
KEGG ReactionR02737,R02778
KEGG Pathwayko00190,ko00500,ko01100,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map00500,map01100,map04714,map04723,map04932,map05010,map05012,map05016
KEGG ModuleM00143
GOsGO:0000003,GO:0000287,GO:0000302,GO:0001101,GO:0003006,GO:0003674,GO:0003824,GO:0003825,GO:0004553,GO:0004805,GO:0005488,GO:0005575,GO:0005576,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0005886,GO:0005946,GO:0005975,GO:0005984,GO:0005991,GO:0005992,GO:0006793,GO:0006796,GO:0006950,GO:0006970,GO:0006974,GO:0006979,GO:0007049,GO:0007154,GO:0008150,GO:0008152,GO:0008194,GO:0009058,GO:0009266,GO:0009269,GO:0009311,GO:0009312,GO:0009405,GO:0009408,GO:0009409,GO:0009414,GO:0009415,GO:0009507,GO:0009536,GO:0009605,GO:0009607,GO:0009628,GO:0009636,GO:0009651,GO:0009653,GO:0009987,GO:0009991,GO:0010035,GO:0010038,GO:0015927,GO:0016020,GO:0016051,GO:0016311,GO:0016740,GO:0016757,GO:0016758,GO:0016787,GO:0016788,GO:0016791,GO:0016798,GO:0019203,GO:0019953,GO:0022402,GO:0022413,GO:0022414,GO:0022603,GO:0030154,GO:0030312,GO:0030435,GO:0030437,GO:0030447,GO:0031668,GO:0031974,GO:0031981,GO:0032502,GO:0032505,GO:0032991,GO:0033554,GO:0034293,GO:0034599,GO:0034605,GO:0034614,GO:0034637,GO:0035251,GO:0035690,GO:0036168,GO:0036180,GO:0040007,GO:0042221,GO:0042493,GO:0042542,GO:0042578,GO:0042631,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043934,GO:0043935,GO:0044182,GO:0044237,GO:0044238,GO:0044249,GO:0044262,GO:0044419,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0046351,GO:0046527,GO:0046677,GO:0046686,GO:0046872,GO:0048468,GO:0048646,GO:0048831,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050896,GO:0051239,GO:0051321,GO:0051704,GO:0051716,GO:0060688,GO:0065007,GO:0070013,GO:0070301,GO:0070413,GO:0070414,GO:0070415,GO:0070417,GO:0070887,GO:0071214,GO:0071229,GO:0071236,GO:0071462,GO:0071465,GO:0071496,GO:0071704,GO:0071944,GO:0090441,GO:0097237,GO:0104004,GO:1900618,GO:1901576,GO:1901700,GO:1901701,GO:1902494,GO:1903046,GO:1905428,GO:1990234,GO:2000026,GO:2000032
EggNOG free text desc.trehalose biosynthetic process
EggNOG OGsCOG1877@1,KOG1050@2759
EC2.4.1.15,2.4.1.347,3.1.3.12
COG Functional cat.G
CAZyGT20
BiGG ReactioniRC1080.CRv4_Au5_s12_g3028_t1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptiontrehalose-6-phosphate phosphatase
Ec32 orthologEc-08_005270.1
Exons4
Model size1212
Cds size693
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8740.16923.1prot_Ecto-sp9_F_contig8740.16923.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig8740 2028..5470 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930921.5761225-UTR-Ecto-sp9_F_contig8740:1742..20271622930921.5761225-UTR-Ecto-sp9_F_contig8740:1742..2027Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8740 1743..2027 +
1692278949.690507-UTR-Ecto-sp9_F_contig8740:1742..20271692278949.690507-UTR-Ecto-sp9_F_contig8740:1742..2027Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8740 1743..2027 +
1622930921.6958883-UTR-Ecto-sp9_F_contig8740:5470..57041622930921.6958883-UTR-Ecto-sp9_F_contig8740:5470..5704Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8740 5471..5704 +
1692278949.7598858-UTR-Ecto-sp9_F_contig8740:5470..57041692278949.7598858-UTR-Ecto-sp9_F_contig8740:5470..5704Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8740 5471..5704 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930921.5995626-CDS-Ecto-sp9_F_contig8740:2027..20841622930921.5995626-CDS-Ecto-sp9_F_contig8740:2027..2084Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8740 2028..2084 +
1692278949.7101502-CDS-Ecto-sp9_F_contig8740:2027..20841692278949.7101502-CDS-Ecto-sp9_F_contig8740:2027..2084Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8740 2028..2084 +
1622930921.623854-CDS-Ecto-sp9_F_contig8740:2734..28661622930921.623854-CDS-Ecto-sp9_F_contig8740:2734..2866Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8740 2735..2866 +
1692278949.7216294-CDS-Ecto-sp9_F_contig8740:2734..28661692278949.7216294-CDS-Ecto-sp9_F_contig8740:2734..2866Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8740 2735..2866 +
1622930921.6403203-CDS-Ecto-sp9_F_contig8740:3911..42201622930921.6403203-CDS-Ecto-sp9_F_contig8740:3911..4220Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8740 3912..4220 +
1692278949.7308826-CDS-Ecto-sp9_F_contig8740:3911..42201692278949.7308826-CDS-Ecto-sp9_F_contig8740:3911..4220Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8740 3912..4220 +
1622930921.672894-CDS-Ecto-sp9_F_contig8740:5275..54701622930921.672894-CDS-Ecto-sp9_F_contig8740:5275..5470Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8740 5276..5470 +
1692278949.7442956-CDS-Ecto-sp9_F_contig8740:5275..54701692278949.7442956-CDS-Ecto-sp9_F_contig8740:5275..5470Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8740 5276..5470 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig8740.16923.1

>prot_Ecto-sp9_F_contig8740.16923.1 ID=prot_Ecto-sp9_F_contig8740.16923.1|Name=mRNA_Ecto-sp9_F_contig8740.16923.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=231bp
METIRDQLVAELKGIDKAEVEDNRFSVSIHYRNCARVDVPRVKEVVERVQ
ARHERIRMGSGKEVFELQPDIAWDKGKAVLWLLDKLVMPMAQAPEEPAPP
PPGEGGGAVTPPPPPPPVGTAAAAAASSSNGGSAGAGATEEEEGDYDDEY
SGRFFTIFIGDDKTDENAFRVLNGDMGEDRARHDGVGILVSEESRETNAA
YTLRNPDEVASFLEKIAKLGSERCGSSSSR*
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mRNA from alignment at Ecto-sp9_F_contig8740:1743..5704+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig8740.16923.1 ID=mRNA_Ecto-sp9_F_contig8740.16923.1|Name=mRNA_Ecto-sp9_F_contig8740.16923.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3962bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8740:1743..5704+ (Ectocarpus species9 EcSCA_722f female)
CATGAAAACAGGGTGGCATCCCTCGGGCCCGCTTCGGCAAGCTGTTGCGG ACAAGCACAGCCGGGTGCAGAAGCACCACCGGCAAGAACAGACGCAGCAG TTTCTTCCTCCAACGGGGAAGTCGCGGCTAACGGTAACACCGGCGACGGT GAGGCGGGGGCGTCCGGTTGCCAAGAGGCGGGGAGCGGGAGTGGCGGAGG GGGTGGGGACGAAGAAGGTGCCGGCGACGACTGCGGTGCCCTCGAGGAGG TGCGGCACCAGGTGGCGCAGGAGTACCTGCCCGTCATGGAGACCATTCGC GACCAGCTCGTCGCCGAGCTCAAGGGCATCGACAAGGCGGAGGTGTGTTT GTGTGTCTCCCCCCCCCCGGGGTGTTGTGTTGCGTATGGTAGTGGTGATG GATTCTTCACGGTGTGAGATTGTGTTATTTTGTTGTGCTGCGACAGGGCG CCTTTGTGAGTTGTGACGTTCTCGTTGGTGACACGCTGTGTTAGTTAGTC TGGCCCACGATGGGGGGCGTAATTGCGCCCCGCGATCTTTTAGCTTTTTT TTGTGAACGAATGGTCACACGCGATTGCTTCACGGTCGTCGCACCTTATA TTGTCGGGCGATTCACGCGAGTGTTGCAGCGCTAGGGTAGCCATCCTTCT TACCGTGTACCACATCACGCGGACCGAGTCTAACCAAACTCTTCCGTTCC GTACGCAAGCATTCCTGCAGACCGAGCCGCAACGTAGGAACCTGGGGGCT ACGACATTCAGGCTCAAATAGAAAGAACCTTAAACAACTTGACCATAATA ACAGCTGCTCAAGACCCTATGGGAATATCTGCCATAATGTTGGGTACAGT ATGAACGAGTCCCAGGCAACAAAACAAGCGGTTCTCAGTTCTTGTTTGGA AGCGGTTTGACAGTACTGTACGAGCCTCAAGCAACAAAACAAGAGGTTCT TAGAAATAGTTCTTAAATGGTGGCGGGTTTTTTGTTACACAGGTGGAGGA CAACCGATTCTCCGTCTCCATCCACTACCGGAACTGCGCGAGGGTGGACG TGCCAAGGGTGAAGGAGGTCGTCGAGCGAGTGCAGGCCAGGCACGAGCGC ATCCGGATGGGCTCGGGCAAGGAGGTGAGCCTTCCTACCGTACCGCTTGG TCTTGCTTCTACGCGCTCTGTGTGTGTTCTTGCTCTTGAAACCACAACCA TGCATTAAAGGAGCGGCGCGGTACCCGCTGGTATATAACTTTGAGCAAGG GGGTAAAAATGACTAACGGGGCCCTTGCAATGGATGACGCGATCGAAAAA GGCTCCCGGATGTTGGTGGTGTCTCATCGAGAAGCAGGAACAACGTTCAG TCTCGAAAGAGACATGCGAAAGAGACATGTGGCCAGTGTTCTAGTTGGCC GAGGAAAGCCGCAAACGAGGAGGCCACCCCCCCCCCCCGCGCGCCCAGCC CTCGCAGCAGCTAAGGGGAGTGGTGGTAGTGTCATCAAGTTGTGCGTGGC TTCGGACCGCAGGCACGGATGGGTCACGTGGCATAGGCAGCATCCCGATG ACCTTGTCTTGTGTGGGAATACTCTTGGCCGCGCCATTGTTATCGCCACC CCAAGAACGTTGTTGGCAACCGCCTCATCCATTGTCATCACGTTGTCACC ACTCATCCCCGCGAGATGAAGACAACCCGCCTCCGCCCCGACAGCGGACA CCCCACACGCCGCTAGCTCCTCACCATTCACACGCGACCTCGACTCTCTG CTGAGAAGCTAGCTCACCACAAGCAATGCGCGCTCGGCGTATTGTGTGCA CAACGCTTGGTTGCCCTTGTCTGGGGAAACCCGACGTTCCACGTTTTTCT CGGCTCTTTTGGAGGTTTGCCAAGAGAGCTCATCACCTTGTCGGAATACA CTTGTACCGTGTAATCACCTTGTCGGGATAAACTTGCGCCGTATGCACAC ATGCATGCACAGGCATACAGGTAACCCCCGCCCCGCCCGCTCTGCTCATG CTCGAGGACGCGTGGTGAATGGTGTAACGACTATGGCAAGAGTACGCCCT CTCCCCCCCCCGCCGCCGCCCGGTGGTCCGCCTGGTCTCCGGTCTAACGA CTACGGCATATGCGCTTACACGGGTACACCCCCCTCCCCGTACCCTCGCA ACGCCTTCTCCTCGTGAAGGTGTTCGAGCTCCAGCCGGACATCGCGTGGG ACAAGGGGAAGGCGGTGCTGTGGCTCCTCGACAAGCTGGTCATGCCCATG GCACAGGCGCCGGAGGAACCGGCCCCGCCGCCGCCGGGGGAGGGGGGGGG GGCGGTGACGCCTCCTCCGCCACCGCCGCCTGTCGGAACAGCGGCGGCGG CCGCGGCTTCTTCGAGTAACGGTGGAAGCGCCGGCGCCGGTGCCACGGAG GAAGAGGAGGGAGATTACGATGATGAGTACTCGGGGCGGTTCTTCACGAT ATTTATCGGAGACGACAAGACCGACGAGGTATGAACTGCAGTTGCGCATG TTTTCCGTGAGCACGGAGATGGAGTGGAAAACTGGGATGGGCGTTTGTAG CTTTTGGGATCGCATGCTCATGTAGGTACAGAGATGGCGTGGAAAACTGA GGGTGGGCATGTGTAGCACGGTGTTCAATTTGGATTCCCTGAAGCAATCG AGAGAGCATGTGGTGTTCGTGGATGTATTCCTCTGCACGGTAGATGGTGC TGGTTCTGGGTAGGGGAAGATTACTAGATTTTCCCCTGCTCCCCTCGTTC TTGTGTGCGGAGAGCGAGAGGATTGCTGTCGGTAGGCTGCTTGCAAACCG AAGGCGACTCGTTTCATGTCAGGGCGTCTTTGGCCTGAATTTTTGTACAC CTATTGCAGCATCGTTTGCTGAAAGACGGACCGGCGGGGCTGGGGGTTGG CTGCGTAAGTTCGCCCCTTCCCATGCTCAACTCGTGCACAGAGAGCAGCA GCAGCAAACGACGTTTCAAGAGTGTACCCCTTAATGACCCCCCTCTTGTT CACCGGCAAAAAAACGCCTTCAAGCGTACCACTCGCTAACGACCCTCATC CACTTTTTGCTCTTCGAACGCCTTCAAAACGTACCACCCGCTGACGACCC TTATCCCCTCTTTTTTTGCCGGCGAAAAACGCCTTCAAATGTTCCACCCA CTAACGACCCCTTATCCCCTGTTTGCTCTTCGACCAAGAACGCCTTCAAA ATGTACCCTGCGAAAACGACCATCCCCGTCGCTCGCGCTAACGGCCCCTA TCCCCTATTTTTTCGCCGACAAAGAACGCCCTCAAAACGTGCCACCCCGC CTACCGACCCCTTATCCCCTCTTGATCGCCAACGAGAAACGGCGTCAAAC GTGCCACCCCGTTCAAACGTACCACCCGCTAACGACCCCCGTACTGTATT TTTTTTGCGCCGACGAAGAACGCCTTTCGGGTGCTGAACAACCCCTATCC CCTCGTTTATCGCCGCAAAGAACGCCTCCAAACCTACCACCCGCTAACGA CCCCCCCACTGTATTTTTTTTGCGCCGACGAAGAACGCCTTCCGGGTGCT GAACGGCGACATGGGCGAGGACAGAGCGCGCCACGACGGCGTGGGCATCC TGGTGTCGGAGGAGTCCCGCGAGACGAACGCCGCCTACACGCTGAGAAAC CCCGACGAGGTCGCCTCGTTCTTGGAGAAGATCGCCAAGCTCGGCAGCGA GCGTTGCGGGAGCTCTTCCAGCCGGTAGCAGACGGCGGCAGGCGGCGGCG GTGGCGGCCCGCAGCCGCCGTAAGTATTGGATTTAGGAGGCGGCAGCAAC AAGCCGCAGTCGTATCCGTCGTTAGCGGTTGGCGCCGTTGGGGACATACA TCCTCGGCGTAGAGCGCCACCGCGGCGAAGTGGTCGTTGTGTGTGTTTTT TTTCCTCGGCAGCCGCACACGCCGTGGTGCCGCTGCTGCCGCTGGCATCG CATGTATACGTG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8740:1743..5704+

>mRNA_Ecto-sp9_F_contig8740.16923.1 ID=mRNA_Ecto-sp9_F_contig8740.16923.1|Name=mRNA_Ecto-sp9_F_contig8740.16923.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1386bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8740:1743..5704+ (Ectocarpus species9 EcSCA_722f female)
ATGGAGACCATTCGCGACCAGCTCGTCGCCGAGCTCAAGGGCATCGACAA
GGCGGAGATGGAGACCATTCGCGACCAGCTCGTCGCCGAGCTCAAGGGCA
TCGACAAGGCGGAGGTGGAGGACAACCGATTCTCCGTCTCCATCCACTAC
CGGAACTGCGCGAGGGTGGACGTGCCAAGGGTGAAGGAGGTCGTCGAGCG
AGTGCAGGCCAGGCACGAGCGCATCCGGATGGGCTCGGGCAAGGAGGTGG
AGGACAACCGATTCTCCGTCTCCATCCACTACCGGAACTGCGCGAGGGTG
GACGTGCCAAGGGTGAAGGAGGTCGTCGAGCGAGTGCAGGCCAGGCACGA
GCGCATCCGGATGGGCTCGGGCAAGGAGGTGTTCGAGCTCCAGCCGGACA
TCGCGTGGGACAAGGGGAAGGCGGTGCTGTGGCTCCTCGACAAGCTGGTC
ATGCCCATGGCACAGGCGCCGGAGGAACCGGCCCCGCCGCCGCCGGGGGA
GGGGGGGGGGGCGGTGACGCCTCCTCCGCCACCGCCGCCTGTCGGAACAG
CGGCGGCGGCCGCGGCTTCTTCGAGTAACGGTGGAAGCGCCGGCGCCGGT
GCCACGGAGGAAGAGGAGGGAGATTACGATGATGAGTACTCGGGGCGGTT
CTTCACGATATTTATCGGAGACGACAAGACCGACGAGGTGTTCGAGCTCC
AGCCGGACATCGCGTGGGACAAGGGGAAGGCGGTGCTGTGGCTCCTCGAC
AAGCTGGTCATGCCCATGGCACAGGCGCCGGAGGAACCGGCCCCGCCGCC
GCCGGGGGAGGGGGGGGGGGCGGTGACGCCTCCTCCGCCACCGCCGCCTG
TCGGAACAGCGGCGGCGGCCGCGGCTTCTTCGAGTAACGGTGGAAGCGCC
GGCGCCGGTGCCACGGAGGAAGAGGAGGGAGATTACGATGATGAGTACTC
GGGGCGGTTCTTCACGATATTTATCGGAGACGACAAGACCGACGAGAACG
CCTTCCGGGTGCTGAACGGCGACATGGGCGAGGACAGAGCGCGCCACGAC
GGCGTGGGCATCCTGGTGTCGGAGGAGTCCCGCGAGACGAACGCCGCCTA
CACGCTGAGAAACCCCGACGAGGTCGCCTCGTTCTTGGAGAAGATCGCCA
AGCTCGGCAGCGAGCGTTGCGGGAGCTCTTCCAGCCGGTAGAACGCCTTC
CGGGTGCTGAACGGCGACATGGGCGAGGACAGAGCGCGCCACGACGGCGT
GGGCATCCTGGTGTCGGAGGAGTCCCGCGAGACGAACGCCGCCTACACGC
TGAGAAACCCCGACGAGGTCGCCTCGTTCTTGGAGAAGATCGCCAAGCTC
GGCAGCGAGCGTTGCGGGAGCTCTTCCAGCCGGTAG
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