mRNA_Ecto-sp9_F_contig8739.16921.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig8739.16921.1
Unique NamemRNA_Ecto-sp9_F_contig8739.16921.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig8739.16921.1 vs.
Match: Beta-1,2-glucan (production associated transmembrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZE1_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 3.530e-39
Identity = 65/67 (97.01%), Postives = 67/67 (100.00%), Query Frame = 1 
Query:    1 DLVSHDIIESSIMTCVKDSTLEIIEGFPGTCLEWHLRQSRWDRGDLILSKYLFAWSYGLPANFCSRF 201
            D++SHDIIESSIMTCVKDSTLEIIEGFPGTCLEWHLRQSRWDRGDLILSKYLFAWSYGLPANFCSRF
Sbjct:  297 DILSHDIIESSIMTCVKDSTLEIIEGFPGTCLEWHLRQSRWDRGDLILSKYLFAWSYGLPANFCSRF 363
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BLAST of mRNA_Ecto-sp9_F_contig8739.16921.1 vs.
Match: Glycosyltransferase (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G114_ECTSI)

HSP 1 Score: 144 bits (362), Expect = 8.000e-39
Identity = 65/67 (97.01%), Postives = 66/67 (98.51%), Query Frame = 1 
Query:    1 DLVSHDIIESSIMTCVKDSTLEIIEGFPGTCLEWHLRQSRWDRGDLILSKYLFAWSYGLPANFCSRF 201
            DLVSHDIIESSIMTC+KD TLEIIEGFPGTCLEWHLRQSRWDRGDLILSKYLFAWSYGLPANFCSRF
Sbjct:  351 DLVSHDIIESSIMTCIKDPTLEIIEGFPGTCLEWHLRQSRWDRGDLILSKYLFAWSYGLPANFCSRF 417
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BLAST of mRNA_Ecto-sp9_F_contig8739.16921.1 vs.
Match: Glyco_trans_2-like (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQP0_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.310e-17
Identity = 38/67 (56.72%), Postives = 50/67 (74.63%), Query Frame = 1 
Query:    1 DLVSHDIIESSIMTCVKDSTLEIIEGFPGTCLEWHLRQSRWDRGDLILSKYLFAWSYGLPANFCSRF 201
            DL+SHDIIESS+M  +    + + E FP T +EWHLRQ+RWD GD+I+SKYLF +++GL  N  SRF
Sbjct:  626 DLISHDIIESSVMKTMLAPEIAVYEDFPLTHVEWHLRQNRWDLGDIIISKYLFPFTFGLLPNLLSRF 692
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BLAST of mRNA_Ecto-sp9_F_contig8739.16921.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ19_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 2.630e-15
Identity = 36/67 (53.73%), Postives = 47/67 (70.15%), Query Frame = 1 
Query:    1 DLVSHDIIESSIMTCVKDSTLEIIEGFPGTCLEWHLRQSRWDRGDLILSKYLFAWSYGLPANFCSRF 201
            DL+SHDIIESS+M  +    + I E  P T +EWHLRQ RWD GD+I+SKYL+ ++YGL  N  + F
Sbjct:  701 DLISHDIIESSVMKTLLAPEISIFEDLPLTHVEWHLRQIRWDLGDIIISKYLYPFTYGLLPNLFTWF 767
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BLAST of mRNA_Ecto-sp9_F_contig8739.16921.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCH0_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 4.660e-13
Identity = 31/53 (58.49%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:    1 DLVSHDIIESSIMTCVKDSTLEIIEGFPGTCLEWHLRQSRWDRGDLILSKYLF 159
            DL+SHDIIESS+M  +    + + E FP T +EWHLRQ+RWD GDLI+ KYL+
Sbjct:  130 DLISHDIIESSVMKTMLVPDITVYEEFPTTHVEWHLRQNRWDLGDLIIGKYLY 182
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BLAST of mRNA_Ecto-sp9_F_contig8739.16921.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZZ7_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 6.540e-13
Identity = 31/53 (58.49%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:    1 DLVSHDIIESSIMTCVKDSTLEIIEGFPGTCLEWHLRQSRWDRGDLILSKYLF 159
            DL+SHDIIESS+M  +    + + E FP T +EWHLRQ+RWD GDLI+ KYL+
Sbjct:  215 DLISHDIIESSVMKTMLVPDITVYEEFPTTHVEWHLRQNRWDLGDLIIGKYLY 267
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BLAST of mRNA_Ecto-sp9_F_contig8739.16921.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ01_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 1.260e-6
Identity = 23/41 (56.10%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:    1 DLVSHDIIESSIMTCVKDSTLEIIEGFPGTCLEWHLRQSRW 123
            DL+SHDIIESS+M  +    + + E FP T +EWHLRQ+RW
Sbjct:  342 DLISHDIIESSVMKTMLVPDITVYEEFPTTHVEWHLRQNRW 382
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8739.16921.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
Beta-1,2-glucan3.530e-3997.01production associated transmembrane protein n=1 Ta... [more]
Glycosyltransferase8.000e-3997.01n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7... [more]
Glyco_trans_2-like1.310e-1756.72domain-containing protein n=1 Tax=Tribonema minus ... [more]
Uncharacterized2.630e-1553.73protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Uncharacterized4.660e-1358.49protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Uncharacterized6.540e-1358.49protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Uncharacterized1.260e-656.10protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8739contigEcto-sp9_F_contig8739:417..617 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score144.4
Seed ortholog evalue1.9e-32
Seed eggNOG ortholog2880.D7FZE1
EggNOG OGs2ETQV@1,2SW0P@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionbeta-1,2-glucan production associated transmembrane protein
Ec32 orthologEc-26_000020.1
Exons1
Model size201
Cds size201
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930921.144281-CDS-Ecto-sp9_F_contig8739:416..6171622930921.144281-CDS-Ecto-sp9_F_contig8739:416..617Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8739 417..617 +
1692278949.4883425-CDS-Ecto-sp9_F_contig8739:416..6171692278949.4883425-CDS-Ecto-sp9_F_contig8739:416..617Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8739 417..617 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8739.16921.1prot_Ecto-sp9_F_contig8739.16921.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig8739 417..617 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig8739.16921.1

>prot_Ecto-sp9_F_contig8739.16921.1 ID=prot_Ecto-sp9_F_contig8739.16921.1|Name=mRNA_Ecto-sp9_F_contig8739.16921.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=67bp
DLVSHDIIESSIMTCVKDSTLEIIEGFPGTCLEWHLRQSRWDRGDLILSK
YLFAWSYGLPANFCSRF
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mRNA from alignment at Ecto-sp9_F_contig8739:417..617+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig8739.16921.1 ID=mRNA_Ecto-sp9_F_contig8739.16921.1|Name=mRNA_Ecto-sp9_F_contig8739.16921.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=201bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8739:417..617+ (Ectocarpus species9 EcSCA_722f female)
GATCTTGTGAGCCACGACATCATCGAGAGCAGCATCATGACGTGCGTCAA
GGACTCCACGCTAGAGATTATTGAAGGATTTCCGGGCACTTGCCTGGAGT
GGCATCTTCGGCAGAGCCGATGGGACAGAGGCGACTTGATCCTGAGCAAG
TATTTGTTCGCTTGGTCATACGGCCTTCCTGCGAACTTCTGCAGTCGGTT
C
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8739:417..617+

>mRNA_Ecto-sp9_F_contig8739.16921.1 ID=mRNA_Ecto-sp9_F_contig8739.16921.1|Name=mRNA_Ecto-sp9_F_contig8739.16921.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=402bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8739:417..617+ (Ectocarpus species9 EcSCA_722f female)
GATCTTGTGAGCCACGACATCATCGAGAGCAGCATCATGACGTGCGTCAA
GGACTCCACGCTAGAGATTATTGAAGGATTTCCGGGCACTTGCCTGGAGT
GGCATCTTCGGCAGAGCCGATGGGACAGAGGCGACTTGATCCTGAGCAAG
TATTTGTTCGCTTGGTCATACGGCCTTCCTGCGAACTTCTGCAGTCGGTT
CGATCTTGTGAGCCACGACATCATCGAGAGCAGCATCATGACGTGCGTCA
AGGACTCCACGCTAGAGATTATTGAAGGATTTCCGGGCACTTGCCTGGAG
TGGCATCTTCGGCAGAGCCGATGGGACAGAGGCGACTTGATCCTGAGCAA
GTATTTGTTCGCTTGGTCATACGGCCTTCCTGCGAACTTCTGCAGTCGGT
TC
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