mRNA_Ecto-sp9_F_contig8732.16918.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig8732.16918.1
Unique NamemRNA_Ecto-sp9_F_contig8732.16918.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig8732.16918.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXZ6_ECTSI)

HSP 1 Score: 413 bits (1061), Expect = 1.680e-129
Identity = 227/237 (95.78%), Postives = 228/237 (96.20%), Query Frame = 1 
Query:    1 AVRRAVPSTAAEGIAWKNVLEVLEHLRDLQEQGEAGLLRDPAWKDGMERGICGLRDTVGRLREAVSKLSQNTAAQVEEMATLKANNKDIKWQTTTAQDLLKYEAGEGERREEGEDDGGGLDNGRDTLDADLVEIRKRIRENRSKIEAAKSDLNVTLKSRRERGPDVAINPAANGRSANGQSATRTPQGPPSRHAAAVTPASSQREAASPLPGYARSRAGGGGGGAHVRGGAIHGVLP 711
            AVRRAVPSTAAEGIAWKNVLEVLEHLRDLQ QGEAGLLRDPAWKDGMERGICGLRDTVGRLREAVSKLSQNTAAQVEEMATLKANNKDIKWQTTTAQDLLKYEAGEGERREEGEDDGGGLDNGRDTLDADLVEIRKRIRENRSKIEAAKSDLN TLKSRRERGPDVAINPAANGR AN QSATRTPQGPPSRHAA VTPASS+REAASPLPG ARSRAGGGG   HVRGGAIHGVLP
Sbjct: 1443 AVRRAVPSTAAEGIAWKNVLEVLEHLRDLQGQGEAGLLRDPAWKDGMERGICGLRDTVGRLREAVSKLSQNTAAQVEEMATLKANNKDIKWQTTTAQDLLKYEAGEGERREEGEDDGGGLDNGRDTLDADLVEIRKRIRENRSKIEAAKSDLNATLKSRRERGPDVAINPAANGRGANSQSATRTPQGPPSRHAA-VTPASSRREAASPLPGSARSRAGGGG---HVRGGAIHGVLP 1675
[Close]
BLAST of mRNA_Ecto-sp9_F_contig8732.16918.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBC0_9PHAE)

HSP 1 Score: 398 bits (1023), Expect = 2.460e-124
Identity = 222/238 (93.28%), Postives = 225/238 (94.54%), Query Frame = 1 
Query:    1 AVRRAVPSTAAEGIAWKNVLEVLEHLRDLQEQGEAGLLRDPAWKDGMERGICGLRDTVGRLREAVSKLSQNTAAQVEEMATLKANNKDIKWQTTTAQDLLKY-EAGEGERREEGEDDGGGLDNGRDTLDADLVEIRKRIRENRSKIEAAKSDLNVTLKSRRERGPDVAINPAANGRSANGQSATRTPQGPPSRHAAAVTPASSQREAASPLPGYARSRAGGGGGGAHVRGGAIHGVLP 711
            AVRRAVPSTAAEGIAWKNVLEVLEHLRDL+EQGEAGLLRD AW DGMERGICGLRDTVGRLREAV+KLSQNTAAQVEEMATLKANNKDIKWQTTTAQDLLKY E GEGERREEGEDDGGGLDNGRDTLDADLVEIRKRIRENRSKIEAAKSDLN TLKSRRERGPDVAINPAANGRSA GQSATRT QGPPSRHAAA TPASS+REAASPLPG ARSRA GGG   HVRGGAIHGVLP
Sbjct: 1292 AVRRAVPSTAAEGIAWKNVLEVLEHLRDLREQGEAGLLRDSAWVDGMERGICGLRDTVGRLREAVNKLSQNTAAQVEEMATLKANNKDIKWQTTTAQDLLKYDETGEGERREEGEDDGGGLDNGRDTLDADLVEIRKRIRENRSKIEAAKSDLNATLKSRRERGPDVAINPAANGRSAIGQSATRTLQGPPSRHAAADTPASSRREAASPLPGSARSRAAGGG---HVRGGAIHGVLP 1526
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8732.16918.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.680e-12995.78protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized2.460e-12493.28protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8732contigEcto-sp9_F_contig8732:2073..5608 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size713
Cds size711
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8732.16918.1prot_Ecto-sp9_F_contig8732.16918.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig8732 2073..5608 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930920.6466572-CDS-Ecto-sp9_F_contig8732:2072..23601622930920.6466572-CDS-Ecto-sp9_F_contig8732:2072..2360Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8732 2073..2360 -
1692278949.2846684-CDS-Ecto-sp9_F_contig8732:2072..23601692278949.2846684-CDS-Ecto-sp9_F_contig8732:2072..2360Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8732 2073..2360 -
1622930920.674057-CDS-Ecto-sp9_F_contig8732:3122..32691622930920.674057-CDS-Ecto-sp9_F_contig8732:3122..3269Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8732 3123..3269 -
1692278949.2934356-CDS-Ecto-sp9_F_contig8732:3122..32691692278949.2934356-CDS-Ecto-sp9_F_contig8732:3122..3269Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8732 3123..3269 -
1622930920.695237-CDS-Ecto-sp9_F_contig8732:4914..50111622930920.695237-CDS-Ecto-sp9_F_contig8732:4914..5011Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8732 4915..5011 -
1692278949.301645-CDS-Ecto-sp9_F_contig8732:4914..50111692278949.301645-CDS-Ecto-sp9_F_contig8732:4914..5011Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8732 4915..5011 -
1622930920.7176118-CDS-Ecto-sp9_F_contig8732:5429..56081622930920.7176118-CDS-Ecto-sp9_F_contig8732:5429..5608Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8732 5430..5608 -
1692278949.310783-CDS-Ecto-sp9_F_contig8732:5429..56081692278949.310783-CDS-Ecto-sp9_F_contig8732:5429..5608Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8732 5430..5608 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig8732.16918.1

>prot_Ecto-sp9_F_contig8732.16918.1 ID=prot_Ecto-sp9_F_contig8732.16918.1|Name=mRNA_Ecto-sp9_F_contig8732.16918.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=237bp
AVRRAVPSTAAEGIAWKNVLEVLEHLRDLQEQGEAGLLRDPAWKDGMERG
ICGLRDTVGRLREAVSKLSQNTAAQVEEMATLKANNKDIKWQTTTAQDLL
KYEAGEGERREEGEDDGGGLDNGRDTLDADLVEIRKRIRENRSKIEAAKS
DLNVTLKSRRERGPDVAINPAANGRSANGQSATRTPQGPPSRHAAAVTPA
SSQREAASPLPGYARSRAGGGGGGAHVRGGAIHGVLP
back to top

mRNA from alignment at Ecto-sp9_F_contig8732:2073..5608-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig8732.16918.1 ID=mRNA_Ecto-sp9_F_contig8732.16918.1|Name=mRNA_Ecto-sp9_F_contig8732.16918.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3536bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8732:2073..5608- (Ectocarpus species9 EcSCA_722f female)
GCGGTGCGAAGAGCGGTTCCGTCTACCGCGGCGGAAGGCATCGCGTGGAA
GAACGTTCTCGAGGTTCTGGAGCACCTGAGGGACCTGCAGGAGCAGGGCG
AGGCGGGGCTGCTGCGAGACCCGGCGTGGAAGGACGGCATGGAGAGGGGC
ATCTGCGGGCTGCGGGACACCGTCGGCAGGTGAAGGTTGTGGAGAGCGAG
CAGAGAGACTGAGACATGAGGCAGAGGCAGACCGTTGTAGAGGCAGAGAG
AGAGAGAGGGAGAAACAGGGAGTACAGGCAGAGGAATAGAGACGGGGAGG
GAAGGGAACGGAGGCCTAGATTAGACATTATTTCTACCTAATTTTTTTTT
GTTATTTTCTTGTGTGTTGGCGAGCATAGGGTGAGTTTGCAAGAGGGGAC
AAGACCGGGGGGCCGGGGTTCCTGGTCACGCTTTTCTCTACCCCCGCGTG
CTAGGGCCCCACGCACGCGTGCCGTAGGTGCCATCTATGGCCCTCCCAAC
AAGCTGCTGCTGCTGCTGCTGCTACTGTTGCTACCGTCGTCTGTGTGTTG
CGTGTTGTTCGGCGCCTGCACCCCGCCCTGCCCTCCCCGGAGAAAAGGCT
CCGGGAGGCGGTGAGCAAGCTGAGTCAAAACACCGCCGCCCAGGTGGAGG
AGATGGCCACGCTAAAGGCCAACAACAAGGACATCAAGTGGCAGGTGGGC
GTGCGCGCGTGTTGGGTATTGTTTTGATGTTGTTGCGGGAGTACCGCACA
GCTGCTGGCTGTCGTAATAAAAGCAGGATGTTCGTCCATCGTCTCTCTCA
GCGCTACTCCGCCCCTCTCTGGACGCCTGACAGCATAGCATAGCATAGCA
TTTCTTTCCCAGCACAGTCTTCTCGATAATAGTTCCGATTTTGCGGAGCT
CTCCGGTGCTCATTGCAAGCTGGGCACACTGCGACGGGCACACCCCGCGT
TGGGCACGCATTTTCATCGATCGACGACGTGTGCAGACCCTCTTCTTCTC
ATCACTCCCTTGTCCCCCCACCACGCCGTCTGTTCTGTCGCTGCCGTACG
GTCTCACTCGTTCATCATCTGTCTTCCACAACATTCACGCTATTTTTCCC
GTCTGGACGCGTGGACACTGTTTTTGGTGTATTCGACTCTTCTTCTCTAA
GGGCCACCGCGCCGCACTCTGTGTCTCTCTGTCTCTCTCTCTCTCTCTGT
CTCGCATTGTAGTCGATCGACATCATGGATGGATGGGCACTATTACACCT
ACCTTCTCCTCCCGCCAGTCCTCCACCAAGCCCTCTATACTCTCCTCGTC
ACTGTCTATCGCACGCGCTCGTTCGTTTGTCTTCAACTGCACACACAGCC
GATTATGTTTCTGCTCTCGTTGTGATCGCCAACATATAGTATGCATACAA
ATATGCAATTGCGTTGATATCCTCTCGGAAATATTCCGATTTTTAACAAT
CAACAAGAAAACAGTCGATTCTCTTCGTTCGGCGGCGGCGCGAAGCGCCA
ATGACCCGAAAATCTGCCATGGTCATTTAGGGACGACGGATTGAAAGGTA
GGGTGTACCCTGTATTTTTGTCGTTGATGGCACTCAACGTTCAGAACAAA
CAGTGTCAGACAAACAAGGCGTTGCTGCGTCCGTCCTCGTTCCGGGCTAC
ATGAGGTGTAATACGGTAGATATGTTCATCATGGCGACGGCGCGTCAAAA
TGTAGATACAAACGCCCGGCCTTTTCCTGGTCCTTCAATCAAGTTTATTC
TCCATTCAACACAATGAAGCACAGCAGTGGTGAGTGCATTTTTACCTACT
GCCTGGCCTCGGCACTCTATGTTGACCTTTCCCTTGGAATCGCCCAATTT
CGGCGGTGGCGCGAAAGTGCCAAGAACCTTGTAACACTATCGAAACAACC
AACATTTATGGGCGTTGGAAATCAAGCGTCCGAGTCCAATGCATTCCTCT
CTTGTGTGTGCGCGTTTTTCTTATTAGCTTCGACGGCGCTAACCGACTGA
CCAGAATAGACGTCAGTCCCAGTGCGGTTGAAAACATAAAACACTTCTAA
ATTCGTGTGTGTTTTCTTATCTGCGTCGACCGCGCTGTTGTAACCGGCTG
ACCAATGAAAAGACGTCAGTCTCAGTGCGATTGAAACACAACATGTGTGT
TTGTTTTTTTTTTGCTGATTCCTGATTTCCTGATTTCCGGATTTCCTGAT
TTCCGGATTTCCGGATTTCCTGATTTCCTGATTTCCTGATTTCCTGATTT
CCTGATTTCCTGATTTCCTGACTTCCTGACTTCCTGATTTCCTGATTTCC
TGATTTCCTGATTTCCTGATGTTCGGTTGCGGACACAAGACCACGACGGC
CCAAGACCTGCTCAAGTACGAGGCCGGCGAAGGGGAACGGCGGGAGGAAG
GGGAGGATGATGGAGGTGGCCTGGACAACGGCAGGGACACTCTGGACGCG
GACTTGGTCGAAATTCGAAAGCGGATCAGGGAAAACGTAAGGAGGCTCCA
ACATGCCCGCCATTTCCGTCTTGACCGTTCGATTCGATACCTACTGCAGT
AAATAATGCCTTGCTTAAAAATACCGCATTCTGTTCGATTTTCACGACAA
GGAAGTATTCACTGGTGTTTGGCTATTGCCGAACGCACACAGGGCGGGTG
ACGATTTGAATAGCGATCCGAGTCGCGGTTTATGTGCGTGTTTTTGTTGT
TTTCAAGCTTTCATCAGGAGCATGTTGTGGGCAGCGCTACGTATCACGGC
TTGTTGCTGCACCGTTTTCGTTTTTTTCTTTCGAGCACAACCAGCCGTTT
CGCATGCATGCAATAGGTGTACGGTTCGCGCTTTTGGCGGAAGCAAGTCT
ACAGGGAGAACGCAAAGCACGGGCAGCGGTTTTCGTCTCGAACGAGGCGT
GGTTTTTCGGGTTGCTGGTGCTGGTGCTGGTGCTGGGTTGCGGATGCAGT
ACTACTTCGGCGCTGCTGCTCCTCGCCTTGCCTATTCCTTTTGCCTGCCC
TGTCCCGGTCCCCGTTCCACTCCTTCGCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCACCTCCCCTCCCAACACACCCCCCACGCACCGAACACCNNNNNN
NNNNGCCTGTCCCCCGCCCCTCCCCCGCCCCCTTCCCCCCCTCCCCCCCC
CCCCCCCCCCCCTCAATGGTCTAACCACTTAAGGCATGCCAAACAAGAGA
GTTCGCACCCCGCCAGTCTCTGATTTTTTTCGATGCCAACTTTTCCAGAG
GAGCAAGATCGAAGCAGCCAAGTCCGACCTCAACGTGACGCTCAAGAGCC
GTCGGGAGCGCGGGCCCGACGTCGCCATCAACCCAGCTGCAAACGGCCGC
AGCGCCAATGGCCAATCAGCGACGAGGACGCCCCAGGGGCCTCCGTCCCG
GCACGCCGCCGCCGTAACTCCGGCGTCATCGCAGCGGGAAGCGGCGTCCC
CGCTACCAGGGTATGCGAGGTCAAGGGCCGGCGGTGGCGGTGGCGGCGCG
CATGTTCGCGGGGGAGCGATTCACGGCGTTTTGCCC
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8732:2073..5608-

>mRNA_Ecto-sp9_F_contig8732.16918.1 ID=mRNA_Ecto-sp9_F_contig8732.16918.1|Name=mRNA_Ecto-sp9_F_contig8732.16918.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1422bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8732:2073..5608- (Ectocarpus species9 EcSCA_722f female)
GCGGTGCGAAGAGCGGTTCCGTCTACCGCGGCGGAAGGCATCGCGTGGAA
GAACGTTCTCGAGGTTCTGGAGCACCTGAGGGACCTGCAGGAGCAGGGCG
AGGCGGGGCTGCTGCGAGACCCGGCGTGGAAGGACGGCATGGAGAGGGGC
ATCTGCGGGCTGCGGGACACCGTCGGCAGGCGGTGCGAAGAGCGGTTCCG
TCTACCGCGGCGGAAGGCATCGCGTGGAAGAACGTTCTCGAGGTTCTGGA
GCACCTGAGGGACCTGCAGGAGCAGGGCGAGGCGGGGCTGCTGCGAGACC
CGGCGTGGAAGGACGGCATGGAGAGGGGCATCTGCGGGCTGCGGGACACC
GTCGGCAGGCTCCGGGAGGCGGTGAGCAAGCTGAGTCAAAACACCGCCGC
CCAGGTGGAGGAGATGGCCACGCTAAAGGCCAACAACAAGGACATCAAGT
GGCAGGCTCCGGGAGGCGGTGAGCAAGCTGAGTCAAAACACCGCCGCCCA
GGTGGAGGAGATGGCCACGCTAAAGGCCAACAACAAGGACATCAAGTGGC
AGACCACGACGGCCCAAGACCTGCTCAAGTACGAGGCCGGCGAAGGGGAA
CGGCGGGAGGAAGGGGAGGATGATGGAGGTGGCCTGGACAACGGCAGGGA
CACTCTGGACGCGGACTTGGTCGAAATTCGAAAGCGGATCAGGGAAAACA
CCACGACGGCCCAAGACCTGCTCAAGTACGAGGCCGGCGAAGGGGAACGG
CGGGAGGAAGGGGAGGATGATGGAGGTGGCCTGGACAACGGCAGGGACAC
TCTGGACGCGGACTTGGTCGAAATTCGAAAGCGGATCAGGGAAAACAGGA
GCAAGATCGAAGCAGCCAAGTCCGACCTCAACGTGACGCTCAAGAGCCGT
CGGGAGCGCGGGCCCGACGTCGCCATCAACCCAGCTGCAAACGGCCGCAG
CGCCAATGGCCAATCAGCGACGAGGACGCCCCAGGGGCCTCCGTCCCGGC
ACGCCGCCGCCGTAACTCCGGCGTCATCGCAGCGGGAAGCGGCGTCCCCG
CTACCAGGGTATGCGAGGTCAAGGGCCGGCGGTGGCGGTGGCGGCGCGCA
TGTTCGCGGGGGAGCGATTCACGGCGTTTTGCCCAGGAGCAAGATCGAAG
CAGCCAAGTCCGACCTCAACGTGACGCTCAAGAGCCGTCGGGAGCGCGGG
CCCGACGTCGCCATCAACCCAGCTGCAAACGGCCGCAGCGCCAATGGCCA
ATCAGCGACGAGGACGCCCCAGGGGCCTCCGTCCCGGCACGCCGCCGCCG
TAACTCCGGCGTCATCGCAGCGGGAAGCGGCGTCCCCGCTACCAGGGTAT
GCGAGGTCAAGGGCCGGCGGTGGCGGTGGCGGCGCGCATGTTCGCGGGGG
AGCGATTCACGGCGTTTTGCCC
back to top