mRNA_Ecto-sp9_F_contig8731.16917.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig8731.16917.1
Unique NamemRNA_Ecto-sp9_F_contig8731.16917.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig8731.16917.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI77_ECTSI)

HSP 1 Score: 188 bits (478), Expect = 2.590e-59
Identity = 93/105 (88.57%), Postives = 99/105 (94.29%), Query Frame = 3 
Query:    3 DMESRWSCATILVPDEGPCQIEFTFAEPQNIVDIQVAFWKGNDRTRTLEVHVNGELTNTHESYADSTFNTLGVTATEASTVVLESVALHSDEWISLLEVLIFVTP 317
            ++ESRWSCAT LVPDEGPCQIEFTFAEPQ+IVDIQVAFWKGNDRTRTL VHVNGELT+THESY DSTFNTLGVTA EASTV+LES AL SDEWISL+EVLIFVTP
Sbjct:   69 EIESRWSCATKLVPDEGPCQIEFTFAEPQHIVDIQVAFWKGNDRTRTLGVHVNGELTHTHESYTDSTFNTLGVTANEASTVMLESTALLSDEWISLIEVLIFVTP 173
[Close]
BLAST of mRNA_Ecto-sp9_F_contig8731.16917.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5F4_ECTSI)

HSP 1 Score: 184 bits (466), Expect = 1.270e-56
Identity = 89/105 (84.76%), Postives = 100/105 (95.24%), Query Frame = 3 
Query:    3 DMESRWSCATILVPDEGPCQIEFTFAEPQNIVDIQVAFWKGNDRTRTLEVHVNGELTNTHESYADSTFNTLGVTATEASTVVLESVALHSDEWISLLEVLIFVTP 317
            ++ESRWSCAT LV DEGPCQIEFTFAEPQ IVDIQVAFWKGN+RTRTLEV++NGE+T+THESYAD+TFNTLGVTAT+ STV+LESVAL SDEWISL+EVLIFVTP
Sbjct:  133 EIESRWSCATKLVDDEGPCQIEFTFAEPQTIVDIQVAFWKGNERTRTLEVYINGEMTHTHESYADATFNTLGVTATDVSTVMLESVALLSDEWISLIEVLIFVTP 237
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BLAST of mRNA_Ecto-sp9_F_contig8731.16917.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI87_ECTSI)

HSP 1 Score: 193 bits (491), Expect = 1.340e-56
Identity = 96/105 (91.43%), Postives = 102/105 (97.14%), Query Frame = 3 
Query:    3 DMESRWSCATILVPDEGPCQIEFTFAEPQNIVDIQVAFWKGNDRTRTLEVHVNGELTNTHESYADSTFNTLGVTATEASTVVLESVALHSDEWISLLEVLIFVTP 317
            D+ESRWSCATILVPDEG CQIEF+FAEPQN+VDIQVAFWKGN+RTRTL VHVNGELT+THESYADSTFNTLGVTATEASTV+LESVAL SDEWISLLEVLIFVTP
Sbjct:  507 DIESRWSCATILVPDEGACQIEFSFAEPQNVVDIQVAFWKGNERTRTLWVHVNGELTHTHESYADSTFNTLGVTATEASTVMLESVALLSDEWISLLEVLIFVTP 611
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BLAST of mRNA_Ecto-sp9_F_contig8731.16917.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI90_ECTSI)

HSP 1 Score: 180 bits (457), Expect = 3.940e-56
Identity = 92/105 (87.62%), Postives = 96/105 (91.43%), Query Frame = 3 
Query:    3 DMESRWSCATILVPDEGPCQIEFTFAEPQNIVDIQVAFWKGNDRTRTLEVHVNGELTNTHESYADSTFNTLGVTATEASTVVLESVALHSDEWISLLEVLIFVTP 317
            D+ESRWSCAT LVPDEGPCQIEFTFAEPQNIVDIQVAFW  N+R  TLEVHVNGELT+THESY D TFNTLGVTATEASTV+LESVAL SDEWISLLEV IFVTP
Sbjct:   69 DIESRWSCATSLVPDEGPCQIEFTFAEPQNIVDIQVAFWNDNERVSTLEVHVNGELTHTHESY-DDTFNTLGVTATEASTVMLESVALLSDEWISLLEVQIFVTP 172
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BLAST of mRNA_Ecto-sp9_F_contig8731.16917.1 vs.
Match: Similar (to Pappalysin-2 (Pregnancy-associated plasma protein-A2) (PAPP-A2) (Pregnancy-associated plasma protein-E1) (PAPP-E) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI88_ECTSI)

HSP 1 Score: 180 bits (457), Expect = 8.910e-55
Identity = 92/105 (87.62%), Postives = 96/105 (91.43%), Query Frame = 3 
Query:    3 DMESRWSCATILVPDEGPCQIEFTFAEPQNIVDIQVAFWKGNDRTRTLEVHVNGELTNTHESYADSTFNTLGVTATEASTVVLESVALHSDEWISLLEVLIFVTP 317
            D+ESRWSCAT LVPDEGPCQIEFTFAEPQNIVDIQVAFW  N+R  TLEVHVNGELT+THESY D TFNTLGVTATEASTV+LESVAL SDEWISLLEV IFVTP
Sbjct:  172 DIESRWSCATSLVPDEGPCQIEFTFAEPQNIVDIQVAFWNDNERVSTLEVHVNGELTHTHESY-DDTFNTLGVTATEASTVMLESVALLSDEWISLLEVQIFVTP 275
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BLAST of mRNA_Ecto-sp9_F_contig8731.16917.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F4_ECTSI)

HSP 1 Score: 185 bits (469), Expect = 4.280e-54
Identity = 89/105 (84.76%), Postives = 100/105 (95.24%), Query Frame = 3 
Query:    3 DMESRWSCATILVPDEGPCQIEFTFAEPQNIVDIQVAFWKGNDRTRTLEVHVNGELTNTHESYADSTFNTLGVTATEASTVVLESVALHSDEWISLLEVLIFVTP 317
            ++ESRWSCAT LV DEGPCQIEFTFAEPQ I+DIQVAFWKGN+RTRTLEVH+NGE+T+THESYAD+TFNTLGVTAT+ STV+LESVAL SDEWISL+EVLIFVTP
Sbjct:  411 EIESRWSCATKLVDDEGPCQIEFTFAEPQTIMDIQVAFWKGNERTRTLEVHINGEMTHTHESYADATFNTLGVTATDVSTVMLESVALLSDEWISLIEVLIFVTP 515
[Close]
BLAST of mRNA_Ecto-sp9_F_contig8731.16917.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4F9_ECTSI)

HSP 1 Score: 184 bits (466), Expect = 7.050e-54
Identity = 89/105 (84.76%), Postives = 100/105 (95.24%), Query Frame = 3 
Query:    3 DMESRWSCATILVPDEGPCQIEFTFAEPQNIVDIQVAFWKGNDRTRTLEVHVNGELTNTHESYADSTFNTLGVTATEASTVVLESVALHSDEWISLLEVLIFVTP 317
            ++ESRWSCAT LV DEGPCQIEFTFAEPQ IVDIQVAFWKGN+RTRTLEV++NGE+T+THESYAD+TFNTLGVTAT+ STV+LESVAL SDEWISL+EVLIFVTP
Sbjct:  384 EIESRWSCATKLVDDEGPCQIEFTFAEPQTIVDIQVAFWKGNERTRTLEVYINGEMTHTHESYADATFNTLGVTATDVSTVMLESVALLSDEWISLIEVLIFVTP 488
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BLAST of mRNA_Ecto-sp9_F_contig8731.16917.1 vs.
Match: LNR (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S3_ECTSI)

HSP 1 Score: 178 bits (452), Expect = 1.200e-53
Identity = 87/105 (82.86%), Postives = 99/105 (94.29%), Query Frame = 3 
Query:    3 DMESRWSCATILVPDEGPCQIEFTFAEPQNIVDIQVAFWKGNDRTRTLEVHVNGELTNTHESYADSTFNTLGVTATEASTVVLESVALHSDEWISLLEVLIFVTP 317
            ++ESRWSCA  L+ DEGPCQIEF+FAEPQNIVDIQVAFWKGN+R RTLEV+VNGELT+THESYADSTFNTLGVTA EA+TV+LESV+L S+EWISL+EVLIFVTP
Sbjct:  202 EIESRWSCAAKLLDDEGPCQIEFSFAEPQNIVDIQVAFWKGNERVRTLEVYVNGELTHTHESYADSTFNTLGVTANEANTVMLESVSLLSNEWISLIEVLIFVTP 306
[Close]
BLAST of mRNA_Ecto-sp9_F_contig8731.16917.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI81_ECTSI)

HSP 1 Score: 177 bits (448), Expect = 5.230e-53
Identity = 85/103 (82.52%), Postives = 100/103 (97.09%), Query Frame = 3 
Query:    3 DMESRWSCATILVPDEGPCQIEFTFAEPQNIVDIQVAFWKGNDRTRTLEVHVNGELTNTHESYADSTFNTLGVTATEASTVVLESVALHSDEWISLLEVLIFV 311
            ++ESRWSCAT+LVPDEGPCQIEF+FA+PQ+IVDIQVAFW+GN+RTRT+++ ++GELT+THESYADSTFNTLGVTATEASTV+LESV L SDEWISLLEVLIFV
Sbjct:  205 EIESRWSCATMLVPDEGPCQIEFSFADPQDIVDIQVAFWEGNERTRTVDIFIDGELTHTHESYADSTFNTLGVTATEASTVMLESVDLLSDEWISLLEVLIFV 307
[Close]
BLAST of mRNA_Ecto-sp9_F_contig8731.16917.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM92_9PHAE)

HSP 1 Score: 180 bits (457), Expect = 4.830e-51
Identity = 92/105 (87.62%), Postives = 96/105 (91.43%), Query Frame = 3 
Query:    3 DMESRWSCATILVPDEGPCQIEFTFAEPQNIVDIQVAFWKGNDRTRTLEVHVNGELTNTHESYADSTFNTLGVTATEASTVVLESVALHSDEWISLLEVLIFVTP 317
            D+ESRWSCAT LVPDEGPCQIEFTFAEPQNIVDIQVAFW  N+R  TLEVHVNGELT+THESY D TFNTLGVTATEASTV+LESVAL SDEWISLLEV IFVTP
Sbjct:  633 DIESRWSCATSLVPDEGPCQIEFTFAEPQNIVDIQVAFWNDNERVSTLEVHVNGELTHTHESY-DDTFNTLGVTATEASTVMLESVALLSDEWISLLEVQIFVTP 736
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8731.16917.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
Uncharacterized2.590e-5988.57protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.270e-5684.76protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.340e-5691.43protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized3.940e-5687.62protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Similar8.910e-5587.62to Pappalysin-2 (Pregnancy-associated plasma prote... [more]
Uncharacterized4.280e-5484.76protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized7.050e-5484.76protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
LNR1.200e-5382.86domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Uncharacterized5.230e-5382.52protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized4.830e-5187.62protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8731contigEcto-sp9_F_contig8731:1779..2761 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size326
Cds size315
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8731.16917.1prot_Ecto-sp9_F_contig8731.16917.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig8731 1784..2755 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930920.4706712-UTR-Ecto-sp9_F_contig8731:1778..17831622930920.4706712-UTR-Ecto-sp9_F_contig8731:1778..1783Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8731 1779..1783 +
1692278949.2284422-UTR-Ecto-sp9_F_contig8731:1778..17831692278949.2284422-UTR-Ecto-sp9_F_contig8731:1778..1783Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8731 1779..1783 +
1622930920.5733206-UTR-Ecto-sp9_F_contig8731:2755..27611622930920.5733206-UTR-Ecto-sp9_F_contig8731:2755..2761Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8731 2756..2761 +
1692278949.2742972-UTR-Ecto-sp9_F_contig8731:2755..27611692278949.2742972-UTR-Ecto-sp9_F_contig8731:2755..2761Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8731 2756..2761 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930920.4941375-CDS-Ecto-sp9_F_contig8731:1783..19271622930920.4941375-CDS-Ecto-sp9_F_contig8731:1783..1927Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8731 1784..1927 +
1692278949.2387393-CDS-Ecto-sp9_F_contig8731:1783..19271692278949.2387393-CDS-Ecto-sp9_F_contig8731:1783..1927Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8731 1784..1927 +
1622930920.5147793-CDS-Ecto-sp9_F_contig8731:2173..23201622930920.5147793-CDS-Ecto-sp9_F_contig8731:2173..2320Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8731 2174..2320 +
1692278949.2504873-CDS-Ecto-sp9_F_contig8731:2173..23201692278949.2504873-CDS-Ecto-sp9_F_contig8731:2173..2320Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8731 2174..2320 +
1622930920.5347812-CDS-Ecto-sp9_F_contig8731:2731..27551622930920.5347812-CDS-Ecto-sp9_F_contig8731:2731..2755Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8731 2732..2755 +
1692278949.2652204-CDS-Ecto-sp9_F_contig8731:2731..27551692278949.2652204-CDS-Ecto-sp9_F_contig8731:2731..2755Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8731 2732..2755 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig8731.16917.1

>prot_Ecto-sp9_F_contig8731.16917.1 ID=prot_Ecto-sp9_F_contig8731.16917.1|Name=mRNA_Ecto-sp9_F_contig8731.16917.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=105bp
MESRWSCATILVPDEGPCQIEFTFAEPQNIVDIQVAFWKGNDRTRTLEVH
VNGELTNTHESYADSTFNTLGVTATEASTVVLESVALHSDEWISLLEVLI
FVTP*
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mRNA from alignment at Ecto-sp9_F_contig8731:1779..2761+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig8731.16917.1 ID=mRNA_Ecto-sp9_F_contig8731.16917.1|Name=mRNA_Ecto-sp9_F_contig8731.16917.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=983bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8731:1779..2761+ (Ectocarpus species9 EcSCA_722f female)
CCGACATGGAGTCGAGGTGGTCGTGCGCCACGATCCTTGTGCCTGACGAA
GGGCCCTGCCAGATCGAGTTCACCTTTGCCGAGCCCCAGAACATCGTGGA
CATCCAGGTTGCCTTCTGGAAGGGCAACGATCGCACCCGTACCCTGGAGG
TGAGGGCGACAGCAAGTCTTCTTTTTCCGTTGCTGTTAGCCCCCAACAGT
ACGTTGACTACAATGAGCAATCGTGAGGACTGCCTTTCACACCATATTTT
AATCTTAGAAGTTTTGGGCTCTCGTGGCGATGGTGTGCCGAAAGCACCCA
CACTGCGGGCTGTGAATCGTCCTCCACTCGGGCTATCGGGTCCAGACTTC
TAACGCCCATGATCACTTTCGCACGCAAAAACCTTTCCCACACAGGTCCA
CGTCAACGGCGAACTGACCAACACGCACGAGTCCTACGCCGATTCCACCT
TCAACACGCTCGGTGTGACGGCTACTGAGGCCAGCACCGTGGTGCTCGAG
TCCGTAGCTCTCCACTCGGACGAATGGATCAGTCTCCTCGAGGTGAGCGT
TGTGTCCACGATGGCTTGCTGCGAGGCCAAGGGGAATTGTCATGTGTTCA
CGTTGAGCGCAGCTCTTTGGTCTGTTTCTTCTGTTCTTGTCGTCAGGCGT
TGACAGAGGAAGGTTATCGTGTATGGTTGCTCTTTTGGACACGAACCCTA
TCGAGCAGGAGAAGCACTCGCGAAGCATCCTACGAATACCGTTTGGGATG
TTCAGCTTGAACTCCCAAAATCTTCCCTTGTTCGTCCAATTACATCCATT
TCGTAGACCTTTCGGCGCGAGCGAGTCTTTGCACAGTGCTCACAAATATA
CTTCTTTGAACGGTTCTCCGGAACAATCGCGTGTCCTTCCCCCCTGTCGT
CTGAACCTGTCTCTGCGTGTGGTATTGTATTTCGCCGTCCACCAACACAC
CAGGTGCTCATCTTCGTGACACCTTGAGTGGTG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8731:1779..2761+

>mRNA_Ecto-sp9_F_contig8731.16917.1 ID=mRNA_Ecto-sp9_F_contig8731.16917.1|Name=mRNA_Ecto-sp9_F_contig8731.16917.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=630bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8731:1779..2761+ (Ectocarpus species9 EcSCA_722f female)
ATGGAGTCGAGGTGGTCGTGCGCCACGATCCTTGTGCCTGACGAAGGGCC
CTGCCAGATCGAGTTCACCTTTGCCGAGCCCCAGAACATCGTGGACATCC
AGGTTGCCTTCTGGAAGGGCAACGATCGCACCCGTACCCTGGAGATGGAG
TCGAGGTGGTCGTGCGCCACGATCCTTGTGCCTGACGAAGGGCCCTGCCA
GATCGAGTTCACCTTTGCCGAGCCCCAGAACATCGTGGACATCCAGGTTG
CCTTCTGGAAGGGCAACGATCGCACCCGTACCCTGGAGGTCCACGTCAAC
GGCGAACTGACCAACACGCACGAGTCCTACGCCGATTCCACCTTCAACAC
GCTCGGTGTGACGGCTACTGAGGCCAGCACCGTGGTGCTCGAGTCCGTAG
CTCTCCACTCGGACGAATGGATCAGTCTCCTCGAGGTCCACGTCAACGGC
GAACTGACCAACACGCACGAGTCCTACGCCGATTCCACCTTCAACACGCT
CGGTGTGACGGCTACTGAGGCCAGCACCGTGGTGCTCGAGTCCGTAGCTC
TCCACTCGGACGAATGGATCAGTCTCCTCGAGGTGCTCATCTTCGTGACA
CCTTGAGTGCTCATCTTCGTGACACCTTGA
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