mRNA_Ecto-sp9_F_contig8729.16913.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig8729.16913.1
Unique NamemRNA_Ecto-sp9_F_contig8729.16913.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig8729.16913.1 vs.
Match: 4a-hydroxytetrahydrobiopterin (dehydratase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G856_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 4.320e-11
Identity = 44/80 (55.00%), Postives = 48/80 (60.00%), Query Frame = 1 
Query:   73 RDRCAVSVRRWRRNRLRYTKKRSNRFLGGAAAVCSCCGLSCYRNLAATKLSRAFSFCVEGDRGTRDTARRVSRPGRPRSW 312
            RD  A  VR WRRNR R TK        G   +C+  GL  YRNL AT  S AFSF VEGDRGT+ TARRV    RP+SW
Sbjct:   32 RDGGAECVRGWRRNRQRDTKN------FGGLLLCAAAGLF-YRNLTATNQSSAFSFRVEGDRGTKYTARRVWHLARPQSW 104
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8729.16913.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
4a-hydroxytetrahydrobiopterin4.320e-1155.00dehydratase n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8729contigEcto-sp9_F_contig8729:2055..2367 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score66.2
Seed ortholog evalue1e-08
Seed eggNOG ortholog2880.D7G856
KEGG rclassRC01208
KEGG koko:K01724
KEGG ReactionR04734
KEGG Pathwayko00790,map00790
EggNOG free text desc.4-alpha-hydroxytetrahydrobiopterin dehydratase activity
EggNOG OGsCOG2154@1,KOG4073@2759
EC4.2.1.96
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04147
Hectar predicted targeting categoryother localisation
Exons1
Model size314
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930920.1208696-CDS-Ecto-sp9_F_contig8729:2055..23671622930920.1208696-CDS-Ecto-sp9_F_contig8729:2055..2367Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8729 2056..2367 -
1692278949.091239-CDS-Ecto-sp9_F_contig8729:2055..23671692278949.091239-CDS-Ecto-sp9_F_contig8729:2055..2367Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8729 2056..2367 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8729.16913.1prot_Ecto-sp9_F_contig8729.16913.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig8729 2056..2367 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig8729.16913.1

>prot_Ecto-sp9_F_contig8729.16913.1 ID=prot_Ecto-sp9_F_contig8729.16913.1|Name=mRNA_Ecto-sp9_F_contig8729.16913.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=104bp
SLRLFREEGDRGTQDAARRVSRPSRDRCAVSVRRWRRNRLRYTKKRSNRF
LGGAAAVCSCCGLSCYRNLAATKLSRAFSFCVEGDRGTRDTARRVSRPGR
PRSW
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mRNA from alignment at Ecto-sp9_F_contig8729:2055..2367-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig8729.16913.1 ID=mRNA_Ecto-sp9_F_contig8729.16913.1|Name=mRNA_Ecto-sp9_F_contig8729.16913.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=313bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8729:2055..2367- (Ectocarpus species9 EcSCA_722f female)
AGCCTCCGGCTCTTTCGCGAGGAGGGAGACCGAGGCACACAAGATGCTGC
GCGCCGTGTCTCGCGCCCATCCCGCGACCGTTGCGCGGTGAGCGTGAGGA
GGTGGCGGCGCAACCGGCTGCGGTACACAAAAAAGAGGTCAAATCGTTTT
TTGGGGGGGGCTGCTGCTGTGTGCAGCTGCTGTGGTCTGTCTTGTTATAG
AAACCTCGCGGCTACCAAATTATCCCGTGCTTTTTCCTTTTGCGTCGAGG
GAGACCGAGGCACAAGAGACACTGCCCGCCGCGTCTCGCGCCCAGGGCGG
CCGCGGTCATGGC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8729:2055..2367-

>mRNA_Ecto-sp9_F_contig8729.16913.1 ID=mRNA_Ecto-sp9_F_contig8729.16913.1|Name=mRNA_Ecto-sp9_F_contig8729.16913.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=624bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8729:2055..2367- (Ectocarpus species9 EcSCA_722f female)
AGCCTCCGGCTCTTTCGCGAGGAGGGAGACCGAGGCACACAAGATGCTGC
GCGCCGTGTCTCGCGCCCATCCCGCGACCGTTGCGCGGTGAGCGTGAGGA
GGTGGCGGCGCAACCGGCTGCGGTACACAAAAAAGAGGTCAAATCGTTTT
TTGGGGGGGGCTGCTGCTGTGTGCAGCTGCTGTGGTCTGTCTTGTTATAG
AAACCTCGCGGCTACCAAATTATCCCGTGCTTTTTCCTTTTGCGTCGAGG
GAGACCGAGGCACAAGAGACACTGCCCGCCGCGTCTCGCGCCCAGGGCGG
CCGCGGTCATGGAGCCTCCGGCTCTTTCGCGAGGAGGGAGACCGAGGCAC
ACAAGATGCTGCGCGCCGTGTCTCGCGCCCATCCCGCGACCGTTGCGCGG
TGAGCGTGAGGAGGTGGCGGCGCAACCGGCTGCGGTACACAAAAAAGAGG
TCAAATCGTTTTTTGGGGGGGGCTGCTGCTGTGTGCAGCTGCTGTGGTCT
GTCTTGTTATAGAAACCTCGCGGCTACCAAATTATCCCGTGCTTTTTCCT
TTTGCGTCGAGGGAGACCGAGGCACAAGAGACACTGCCCGCCGCGTCTCG
CGCCCAGGGCGGCCGCGGTCATGG
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