mRNA_Ecto-sp9_F_contig8728.16912.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig8728.16912.1
Unique NamemRNA_Ecto-sp9_F_contig8728.16912.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8728.16912.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8728contigEcto-sp9_F_contig8728:4602..5572 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size322
Cds size321
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930920.0625331-CDS-Ecto-sp9_F_contig8728:4602..48781622930920.0625331-CDS-Ecto-sp9_F_contig8728:4602..4878Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8728 4603..4878 -
1692278949.0642347-CDS-Ecto-sp9_F_contig8728:4602..48781692278949.0642347-CDS-Ecto-sp9_F_contig8728:4602..4878Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8728 4603..4878 -
1622930920.0804121-CDS-Ecto-sp9_F_contig8728:5527..55721622930920.0804121-CDS-Ecto-sp9_F_contig8728:5527..5572Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8728 5528..5572 -
1692278949.0778453-CDS-Ecto-sp9_F_contig8728:5527..55721692278949.0778453-CDS-Ecto-sp9_F_contig8728:5527..5572Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8728 5528..5572 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8728.16912.1prot_Ecto-sp9_F_contig8728.16912.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig8728 4603..5572 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig8728.16912.1

>prot_Ecto-sp9_F_contig8728.16912.1 ID=prot_Ecto-sp9_F_contig8728.16912.1|Name=mRNA_Ecto-sp9_F_contig8728.16912.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=107bp
REIAARVSELTAALETSEAGLRAAELSRRSAEVDAETAEERRRDLETLVA
DLKRLVIPGNRAAAAAGGGSGSVATASRDNDDDDNAVGGSGSSIDGGSLP
SPPSSSA
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mRNA from alignment at Ecto-sp9_F_contig8728:4602..5572-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig8728.16912.1 ID=mRNA_Ecto-sp9_F_contig8728.16912.1|Name=mRNA_Ecto-sp9_F_contig8728.16912.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=971bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8728:4602..5572- (Ectocarpus species9 EcSCA_722f female)
AGGGAGATAGCCGCCAGGGTGTCGGAGCTCACGGCCGCTCTCGAGGTGCC
TGAATTTGTTTTTTCATCACCTGCGACAGACAACAACCACGTATGATGCA
GTCGATCTTCGTGGCACGATGTCTCTGTTAGATCAAGACTAGGTCTTGTG
GACAAGCGCTGACTGTACTCTTATGGATTAGCCTTCATCTAACAATATAT
GTGTCTAACGGAATAGCCTTACCTAACTAATGATATGTGCTACGGCAGCG
ATCCCCGTGGCGAACCATTTCGCCTGTTGGCTTTTATTTAACAGTCTCGA
TGAAGCACCGAAGGGAGGGTTGATTCGTGTTTCGGAAGGCGGAATCTCTG
AGAAAAAACTTGTCTCTCGAGCCTTGGACAAGATGCACCGTCCGGTGTCT
ACGACGCCTTTGGTACCCGCCATGTCGAGGTTGAGGTATCGACCGCGTGT
CAGGAGCGTGCGATGCCTCGTGCAACAGACGGTACTAATACTTATTGTTT
TCTTTCGCGTAAAAAAAAGCAGAAAGTTCCGATTTGTGCTGGAGCAGTAC
CTCCTAACACCCGTGCATATTGATGCAACTGAGGCGGACACCTTCCGTGG
CGCTACTCTTGCTTGCCTCCCGCCTGCCACACCTGCTGTATCTCCTGTAA
CGTTCCGCCACTTGTTGTACTGGCTGTGCGTGCGTTGAGAGCAGACAAGC
GAGGCTGGCCTTAGGGCCGCGGAGCTGTCCCGCCGGTCGGCGGAGGTCGA
CGCCGAGACCGCGGAGGAACGCCGCCGCGACCTGGAAACCCTCGTCGCAG
ACCTGAAACGCCTCGTCATCCCGGGTAATCGCGCCGCTGCCGCCGCCGGT
GGTGGGTCAGGCAGCGTGGCTACGGCATCAAGGGACAACGACGACGACGA
CAACGCGGTCGGCGGTAGTGGCAGTAGCATCGACGGTGGGTCGTTGCCGT
CGCCCCCTTCCTCCTCCGCCG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8728:4602..5572-

>mRNA_Ecto-sp9_F_contig8728.16912.1 ID=mRNA_Ecto-sp9_F_contig8728.16912.1|Name=mRNA_Ecto-sp9_F_contig8728.16912.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=642bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8728:4602..5572- (Ectocarpus species9 EcSCA_722f female)
AGGGAGATAGCCGCCAGGGTGTCGGAGCTCACGGCCGCTCTCGAGAGGGA
GATAGCCGCCAGGGTGTCGGAGCTCACGGCCGCTCTCGAGACAAGCGAGG
CTGGCCTTAGGGCCGCGGAGCTGTCCCGCCGGTCGGCGGAGGTCGACGCC
GAGACCGCGGAGGAACGCCGCCGCGACCTGGAAACCCTCGTCGCAGACCT
GAAACGCCTCGTCATCCCGGGTAATCGCGCCGCTGCCGCCGCCGGTGGTG
GGTCAGGCAGCGTGGCTACGGCATCAAGGGACAACGACGACGACGACAAC
GCGGTCGGCGGTAGTGGCAGTAGCATCGACGGTGGGTCGTTGCCGTCGCC
CCCTTCCTCCTCCGCCACAAGCGAGGCTGGCCTTAGGGCCGCGGAGCTGT
CCCGCCGGTCGGCGGAGGTCGACGCCGAGACCGCGGAGGAACGCCGCCGC
GACCTGGAAACCCTCGTCGCAGACCTGAAACGCCTCGTCATCCCGGGTAA
TCGCGCCGCTGCCGCCGCCGGTGGTGGGTCAGGCAGCGTGGCTACGGCAT
CAAGGGACAACGACGACGACGACAACGCGGTCGGCGGTAGTGGCAGTAGC
ATCGACGGTGGGTCGTTGCCGTCGCCCCCTTCCTCCTCCGCC
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