mRNA_Ecto-sp9_F_contig8724.16910.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig8724.16910.1
Unique NamemRNA_Ecto-sp9_F_contig8724.16910.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig8724.16910.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJF1_ECTSI)

HSP 1 Score: 285 bits (730), Expect = 1.870e-84
Identity = 146/148 (98.65%), Postives = 146/148 (98.65%), Query Frame = 1 
Query:    1 AMSGGGVDDSGPQTILRVTILEAEGLRNVAVLKKTDSYVAAELVTRTGRREGRTAVQKNTCDPKWNEPLSFLLPSGSVIDAQLSLRIVGKQKLRDDLPLGRVELPLAGISTAGTKGPGDIGAWFQLLDGQGRLKIDAEVATRRPSLIV 444
            AMSG GVDDSGPQTILRVTILEAEGLRNVAVLKKTDSYVAAELVTRTGRREGRTAVQKNTCDPKWNEPLSFLLPSGSVIDAQLSLRIVGKQKLRDDLPLGRVELPLAGISTAGTKGPGDIGAWFQLLDGQGRLKIDAEV TRRPSLIV
Sbjct: 1642 AMSGVGVDDSGPQTILRVTILEAEGLRNVAVLKKTDSYVAAELVTRTGRREGRTAVQKNTCDPKWNEPLSFLLPSGSVIDAQLSLRIVGKQKLRDDLPLGRVELPLAGISTAGTKGPGDIGAWFQLLDGQGRLKIDAEVVTRRPSLIV 1789
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BLAST of mRNA_Ecto-sp9_F_contig8724.16910.1 vs.
Match: C2 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ77_9PHAE)

HSP 1 Score: 278 bits (711), Expect = 6.450e-82
Identity = 142/148 (95.95%), Postives = 144/148 (97.30%), Query Frame = 1 
Query:    1 AMSGGGVDDSGPQTILRVTILEAEGLRNVAVLKKTDSYVAAELVTRTGRREGRTAVQKNTCDPKWNEPLSFLLPSGSVIDAQLSLRIVGKQKLRDDLPLGRVELPLAGISTAGTKGPGDIGAWFQLLDGQGRLKIDAEVATRRPSLIV 444
            AM G GVD+SGPQTILRVTILEAEGLRNVAVLKKTDSYVAAELVTRTGRREGRTAVQKNTCDPKWNEPLSFLLPSGSVIDAQL LRIVGKQKLRDDLPLGRVELPLAGISTAGTKGPGDIGAWFQLLDGQGRLKIDAE+ TRRPSLIV
Sbjct: 1495 AMLGVGVDNSGPQTILRVTILEAEGLRNVAVLKKTDSYVAAELVTRTGRREGRTAVQKNTCDPKWNEPLSFLLPSGSVIDAQLCLRIVGKQKLRDDLPLGRVELPLAGISTAGTKGPGDIGAWFQLLDGQGRLKIDAELVTRRPSLIV 1642
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BLAST of mRNA_Ecto-sp9_F_contig8724.16910.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Bifiguratus adelaidae TaxID=1938954 RepID=A0A261Y3I6_9FUNG)

HSP 1 Score: 55.1 bits (131), Expect = 6.880e-5
Identity = 36/99 (36.36%), Postives = 52/99 (52.53%), Query Frame = 1 
Query:   43 ILRVTILEAEGLRNVAVLKKTDSYVAAELVTRTGRRE-GRTAVQKNTCDPKWNEPLSFLLPSGSVIDAQLSLRIVGKQKLRDDLPLGRVELPLAGISTA 336
            +L VT+   +G++NV ++ K+D YV   L    G+ E GRT+VQ++T DPKW E    LL     ++  L L I  K +   D  +G  E  L  I  A
Sbjct:  471 VLAVTVHSGQGIKNVELIGKSDPYVRFLL---EGKPELGRTSVQQDTTDPKWEETHFLLLND---LEEVLKLAIYDKDENTKDKSMGTAEFDLKSIKDA 563
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8724.16910.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized1.870e-8498.65protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
C26.450e-8295.95domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Uncharacterized6.880e-536.36protein (Fragment) n=1 Tax=Bifiguratus adelaidae T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8724contigEcto-sp9_F_contig8724:3676..5864 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score62.8
Seed ortholog evalue1.6e-07
Seed eggNOG ortholog7918.ENSLOCP00000007115
Preferred nameSYT13
KEGG koko:K19913
GOsGO:0000149,GO:0001505,GO:0003674,GO:0005488,GO:0005509,GO:0005515,GO:0005543,GO:0005544,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0005887,GO:0006810,GO:0006836,GO:0006887,GO:0006906,GO:0006996,GO:0007154,GO:0007267,GO:0007268,GO:0007269,GO:0008150,GO:0008289,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016079,GO:0016192,GO:0017156,GO:0017157,GO:0017158,GO:0019905,GO:0023052,GO:0023061,GO:0030133,GO:0030276,GO:0031224,GO:0031226,GO:0031410,GO:0031982,GO:0032879,GO:0032940,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0045055,GO:0046872,GO:0046903,GO:0046907,GO:0048284,GO:0048489,GO:0048791,GO:0050789,GO:0050794,GO:0051046,GO:0051049,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0060627,GO:0061024,GO:0061025,GO:0065007,GO:0065008,GO:0071840,GO:0071944,GO:0090174,GO:0097479,GO:0097480,GO:0097708,GO:0098916,GO:0099003,GO:0099504,GO:0099536,GO:0099537,GO:0099643,GO:1903305,GO:1903530
EggNOG free text desc.Synaptotagmin XIII
EggNOG OGs38WU7@33154,3BBMG@33208,3D072@33213,486MG@7711,48URP@7742,49W1P@7898,KOG1028@1,KOG1028@2759
COG Functional cat.TU
Best tax levelActinopterygii
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Exons3
Model size809
Cds size444
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8724.16910.1prot_Ecto-sp9_F_contig8724.16910.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig8724 3679..5502 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930919.7726412-UTR-Ecto-sp9_F_contig8724:3675..36781622930919.7726412-UTR-Ecto-sp9_F_contig8724:3675..3678Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8724 3676..3678 +
1692278948.9204795-UTR-Ecto-sp9_F_contig8724:3675..36781692278948.9204795-UTR-Ecto-sp9_F_contig8724:3675..3678Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8724 3676..3678 +
1622930919.8619804-UTR-Ecto-sp9_F_contig8724:5502..58641622930919.8619804-UTR-Ecto-sp9_F_contig8724:5502..5864Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8724 5503..5864 +
1692278948.9667258-UTR-Ecto-sp9_F_contig8724:5502..58641692278948.9667258-UTR-Ecto-sp9_F_contig8724:5502..5864Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8724 5503..5864 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930919.790966-CDS-Ecto-sp9_F_contig8724:3678..37171622930919.790966-CDS-Ecto-sp9_F_contig8724:3678..3717Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8724 3679..3717 +
1692278948.9344537-CDS-Ecto-sp9_F_contig8724:3678..37171692278948.9344537-CDS-Ecto-sp9_F_contig8724:3678..3717Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8724 3679..3717 +
1622930919.8322563-CDS-Ecto-sp9_F_contig8724:4089..42211622930919.8322563-CDS-Ecto-sp9_F_contig8724:4089..4221Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8724 4090..4221 +
1692278948.9451563-CDS-Ecto-sp9_F_contig8724:4089..42211692278948.9451563-CDS-Ecto-sp9_F_contig8724:4089..4221Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8724 4090..4221 +
1622930919.8455846-CDS-Ecto-sp9_F_contig8724:5229..55021622930919.8455846-CDS-Ecto-sp9_F_contig8724:5229..5502Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8724 5230..5502 +
1692278948.9560177-CDS-Ecto-sp9_F_contig8724:5229..55021692278948.9560177-CDS-Ecto-sp9_F_contig8724:5229..5502Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8724 5230..5502 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig8724.16910.1

>prot_Ecto-sp9_F_contig8724.16910.1 ID=prot_Ecto-sp9_F_contig8724.16910.1|Name=mRNA_Ecto-sp9_F_contig8724.16910.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=148bp
MSGGGVDDSGPQTILRVTILEAEGLRNVAVLKKTDSYVAAELVTRTGRRE
GRTAVQKNTCDPKWNEPLSFLLPSGSVIDAQLSLRIVGKQKLRDDLPLGR
VELPLAGISTAGTKGPGDIGAWFQLLDGQGRLKIDAEVATRRPSLIV*
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mRNA from alignment at Ecto-sp9_F_contig8724:3676..5864+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig8724.16910.1 ID=mRNA_Ecto-sp9_F_contig8724.16910.1|Name=mRNA_Ecto-sp9_F_contig8724.16910.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2189bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8724:3676..5864+ (Ectocarpus species9 EcSCA_722f female)
GCCATGTCGGGGGGGGGGGTGGATGACAGCGGGCCTCAGACGGTGAGACA
AAGTGGTACATAGCAGTATTAGATTGCATCGTCTGTGTTGTGTGTGCTGT
TCTTATCTGTGCTGTGTGCGTGGCCCCTTCTCACGTAGTACATGCTACGT
AATGGTGAGATTGACAAGGGCGACGGGTAATATAAAGTCACGGCGTTGTT
GTTGGTGGGCGATTGTAAGGTGCCTACACGTGTTAGATGCCACTGGCTTC
CTCTGCCACTACAGCAGTACTCCGCAAAAGCTGTTTTTCGCTTAACCCGC
AAGTCTTGTCGGTATCCCGAACAACCTTCCCACTAAGCACAGCCCTAGCT
AAAACACGGGGTACCCTGCGCGTGCTTGTTTGTTCGCCTCCCCCCCCCTC
GCCCCTTGCTGTAGATTCTTCGCGTGACCATTCTTGAAGCAGAGGGCCTC
CGCAACGTGGCCGTTCTGAAAAAGACGGATTCCTACGTCGCCGCCGAGCT
GGTCACGCGTACCGGGAGACGGGAGGGCAGAACTGCGGTGCAAAAGGTAA
AGAACGGGCACAACTACGCAGACACAGTCGTGCCTCCGATAGAAGAGGGT
GACGTGACCAAGGCCTTCGACCCGCTTACATGGGCCCCCCGCCTTTTTCG
GGAATAAGAGGGTACTCAACTAGGTATGCGATAGCGGGTCGAGTGGCAAC
CGATTTCGAACCTCATACATCGGAGCCCCCCGCCTTTATAAGGTGCCCTC
TGATGTCGGAGCCACGACTGTACTAACTGGTGCCGGAGGAAGTTGTCCTT
ATCTAGGCAAGGCGGCAATGTTGCCGTCTGGTACGTCGTTGTATGTCTTG
GCGTGGTCCCTCCTCGTCTGTTGTGGAATATTACTTCAGGCCTTGCTGCT
CTGAGCAAAGCTTGGACAAGTGTTCCGTTCCTCTTCAACCCAACTTCTTC
GCGGCCTGTCCTGTCATCGAAAAGTACTCCCCTCCTATCCTTGGTATAAA
AAAGAACAAATCCGTCCCCCGGTCCCCTCTAGTTCACCTTTTACTTTTTT
TTTTTGTCTTCACTTCAAATCAGCGCTCACAGCACTAGTGCCGTTTACTC
CAACCCGTGGTCACACGGAAGAGCCCCTCTCTTTACTGCGCTTGGTGAAA
TAATTCTTTCCGCCTGGCTGGCAAGCTCTCTCTCTGGCTGCCGTACTGTA
CGTGCTCAGTGTCCAACCAGGGTTCGATTCCTTAGACATGCAACGGGCTG
AACGTTCTCTCTATCGTGTGCACAACACGGCGGCAGTACCAGTCACCCTC
CTTGAGCAGCAGTCACTCGATCGCAACTGCTGTGCTACAGCAGTGCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTGTG
GTTCTCCCCGGGCCGCCCCCCCCCCCCCCCCCCTCCCGCTTGCCTCGAAA
AACCACGTCACATCCGCAGTGTCGTTCTTGCCTGTTTGTGTTTGACTAAT
TGTTCTTGTACCCTCCTCCTCCTGCTGCTGCTGCTGCTGTTTGTCCTTCC
TCAGAACACGTGCGATCCCAAGTGGAACGAGCCCCTGTCCTTCCTCCTCC
CGTCGGGGAGCGTCATCGACGCCCAGCTCTCGCTCAGGATCGTCGGGAAG
CAGAAGCTCCGGGACGACTTGCCCCTTGGACGTGTGGAGTTGCCCCTGGC
AGGCATTTCCACGGCGGGAACGAAGGGACCCGGCGACATCGGGGCCTGGT
TCCAGCTGCTGGACGGCCAGGGAAGGCTTAAGATCGATGCGGAAGTGGCG
ACTCGTCGACCCAGTCTCATAGTGTGAGGGTGGTTTCACCGCAGGCGGTG
GGTGGTGCCGGGCAAGCGGTCTGTGGCTTCGAGATTTAGGCCGACTTGGT
GTGTGACCCATGTAGGCCTGGCGTTTTGTCATGTAGCGTTCCGCGTCCAC
CAACAGGCGTTTTGAGGTTCGCTTTGTTTTACATATTTTGTATTTGAGGT
TCGCTTCGACATGGATAAGGCCTTCTTGTTGGTGGGGCAAGGGGCGGAAT
TGAGGTTTCCCTTTTTGTTGGAGGTGGGAAGGCGGTTTTTTTATGGCGTG
TTTAGGGTTTCGCAGAAAATGAAGACGAAGTAGTAACTAGCATATTATTT
AGTTGTCGTGTTGGGTTTTAGGAGACACTCGCGGACGGT
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8724:3676..5864+

>mRNA_Ecto-sp9_F_contig8724.16910.1 ID=mRNA_Ecto-sp9_F_contig8724.16910.1|Name=mRNA_Ecto-sp9_F_contig8724.16910.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=888bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8724:3676..5864+ (Ectocarpus species9 EcSCA_722f female)
ATGTCGGGGGGGGGGGTGGATGACAGCGGGCCTCAGACGATGTCGGGGGG
GGGGGTGGATGACAGCGGGCCTCAGACGATTCTTCGCGTGACCATTCTTG
AAGCAGAGGGCCTCCGCAACGTGGCCGTTCTGAAAAAGACGGATTCCTAC
GTCGCCGCCGAGCTGGTCACGCGTACCGGGAGACGGGAGGGCAGAACTGC
GGTGCAAAAGATTCTTCGCGTGACCATTCTTGAAGCAGAGGGCCTCCGCA
ACGTGGCCGTTCTGAAAAAGACGGATTCCTACGTCGCCGCCGAGCTGGTC
ACGCGTACCGGGAGACGGGAGGGCAGAACTGCGGTGCAAAAGAACACGTG
CGATCCCAAGTGGAACGAGCCCCTGTCCTTCCTCCTCCCGTCGGGGAGCG
TCATCGACGCCCAGCTCTCGCTCAGGATCGTCGGGAAGCAGAAGCTCCGG
GACGACTTGCCCCTTGGACGTGTGGAGTTGCCCCTGGCAGGCATTTCCAC
GGCGGGAACGAAGGGACCCGGCGACATCGGGGCCTGGTTCCAGCTGCTGG
ACGGCCAGGGAAGGCTTAAGATCGATGCGGAAGTGGCGACTCGTCGACCC
AGTCTCATAGTGTGAAACACGTGCGATCCCAAGTGGAACGAGCCCCTGTC
CTTCCTCCTCCCGTCGGGGAGCGTCATCGACGCCCAGCTCTCGCTCAGGA
TCGTCGGGAAGCAGAAGCTCCGGGACGACTTGCCCCTTGGACGTGTGGAG
TTGCCCCTGGCAGGCATTTCCACGGCGGGAACGAAGGGACCCGGCGACAT
CGGGGCCTGGTTCCAGCTGCTGGACGGCCAGGGAAGGCTTAAGATCGATG
CGGAAGTGGCGACTCGTCGACCCAGTCTCATAGTGTGA
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