mRNA_Ecto-sp9_F_contig872.16902.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig872.16902.1
Unique NamemRNA_Ecto-sp9_F_contig872.16902.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig872.16902.1 vs.
Match: UBC (core domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LBS4_9PHAE)

HSP 1 Score: 582 bits (1499), Expect = 1.940e-201
Identity = 307/341 (90.03%), Postives = 317/341 (92.96%), Query Frame = 2 
Query:  209 MPVNIKNPAIKRIHADVRELMKDPSDQYHAAPLESNLFEWHFTIRGPPDTEFEGGVYHGRIILPPEYPFRPPDIMFNTPNGRFSTGMKICLTISSYHPEHWQPAWGIRLILEALISFFPSPSHGALGGLDWSAEERKRLAVESRKWKCYKCGLVADLLPELRPKGESGGASSRSSYADQIKELHKLKAKTADEVAAESPVAXXXXXXXXDDREPGTTVSESPSGKIASTKKEAEVIAQASGEKRGGISTISETTATTAPSSPRLRSGGGAPAERGGDPTPSPANARGASEVEGNQGQQXXXESREDDLGREDDVLSFVAVAIALAIVGILVRKALRLAEVI 1231
            MPVNIKNPAIKRIHADVRELMKDPSDQYHAAPLESNLFEWHFTIRGPPDTEF+GGVYHGRIILPPEYPFRPPDIMFNTPNGRFSTGMKICLTISSYHPE+WQPAWGIRLILEALISFFPSPSHGALGGLDWSA ERKRLAVESR+WKCYKCG+VADLLPELRPKGESGGASSRS YADQIKELHKLKAKTADEVAAESPV    XXXX DDR+PGTT SESPSGKI STKKEAEVIAQASG+K GGI  IS+TTATTAPSSPRLRS GG PAE  G PTP+ ANARG SEVEG+ GQQ   ESRE+ LGREDDVLSFVAVAIALAIVGILVRKALRLAEVI
Sbjct:    1 MPVNIKNPAIKRIHADVRELMKDPSDQYHAAPLESNLFEWHFTIRGPPDTEFQGGVYHGRIILPPEYPFRPPDIMFNTPNGRFSTGMKICLTISSYHPEYWQPAWGIRLILEALISFFPSPSHGALGGLDWSAGERKRLAVESRQWKCYKCGVVADLLPELRPKGESGGASSRSIYADQIKELHKLKAKTADEVAAESPVTAAAXXXXSDDRDPGTTGSESPSGKIGSTKKEAEVIAQASGKKCGGIGAISKTTATTAPSSPRLRSVGGGPAEGRGGPTPAHANARGTSEVEGDGGQQQKQESREEYLGREDDVLSFVAVAIALAIVGILVRKALRLAEVI 341
[Close]
BLAST of mRNA_Ecto-sp9_F_contig872.16902.1 vs.
Match: Ubiquitin-conjugating (enzyme E2 J1 n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=I2CR53_NANGC)

HSP 1 Score: 271 bits (693), Expect = 1.330e-80
Identity = 120/167 (71.86%), Postives = 140/167 (83.83%), Query Frame = 2 
Query:  218 NIKNPAIKRIHADVRELMKDPSDQYHAAPLESNLFEWHFTIRGPPDTEFEGGVYHGRIILPPEYPFRPPDIMFNTPNGRFSTGMKICLTISSYHPEHWQPAWGIRLILEALISFFPSPSHGALGGLDWSAEERKRLAVESRKWKCYKCGLVADLLPELRPK-GESGG 715
            N+KNPAI+RIHAD+REL KDPSDQYHAAPLE NLFEWHFT+RGPP T+++ GVYHGRI+LP EYPF+PP+IM  TP+GRF  G KICL+IS++HPEHWQPAWG+RLILEALISFFP+   GA+G LDW+ EERKRLAVESR W C +CGL+  LLP L    GE  G
Sbjct:    9 NVKNPAIRRIHADIRELQKDPSDQYHAAPLEENLFEWHFTLRGPPATDYDAGVYHGRILLPAEYPFKPPNIMLLTPSGRFEIGKKICLSISAHHPEHWQPAWGVRLILEALISFFPTEPKGAVGSLDWTPEERKRLAVESRSWCCARCGLIKTLLPPLNTAVGEESG 175
[Close]
BLAST of mRNA_Ecto-sp9_F_contig872.16902.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CP11_PYTOL)

HSP 1 Score: 264 bits (674), Expect = 1.930e-78
Identity = 127/203 (62.56%), Postives = 157/203 (77.34%), Query Frame = 2 
Query:  209 MPVNIKNPAIKRIHADVRELMKDPSDQYHAAPLESNLFEWHFTIRGPPDTEFEGGVYHGRIILPPEYPFRPPDIMFNTPNGRFSTGMKICLTISSYHPEHWQPAWGIRLILEALISFFPSPSHGALGGLDWSAEERKRLAVESRKWKCYKCGLVADLLPELRPKGESGGASSRSSYADQIKELH--KLKAK---TADEVAAES 802
            M  +++N AIKRI  DVRE+MKDPSDQY+AAPLE N+F+WHFT+RGPPDTEFEGG+YHGRI+LP +YPF+PP+IM  TPNGRF    KICL+IS++HPE WQPAWGIRLILEALISF P+   GA+G +D+  EERKRLA  S  + C  CG VA+LLPEL+ + E   AS  S YADQI +LH   L++K   +A++ A ES
Sbjct:    1 MASSVRNTAIKRIQGDVREMMKDPSDQYYAAPLEDNMFDWHFTLRGPPDTEFEGGIYHGRILLPADYPFKPPNIMLLTPNGRFEVRKKICLSISAHHPEEWQPAWGIRLILEALISFMPTKGEGAIGAIDYPPEERKRLAKLSCDYTCDVCGKVAELLPELKEEDEEN-ASKPSKYADQIAQLHMHSLESKPATSAEDTAQES 202
[Close]
BLAST of mRNA_Ecto-sp9_F_contig872.16902.1 vs.
Match: UBC (core domain-containing protein n=19 Tax=Phytophthora TaxID=4783 RepID=V9E9I6_PHYPR)

HSP 1 Score: 261 bits (667), Expect = 2.870e-77
Identity = 120/191 (62.83%), Postives = 146/191 (76.44%), Query Frame = 2 
Query:  209 MPVNIKNPAIKRIHADVRELMKDPSDQYHAAPLESNLFEWHFTIRGPPDTEFEGGVYHGRIILPPEYPFRPPDIMFNTPNGRFSTGMKICLTISSYHPEHWQPAWGIRLILEALISFFPSPSHGALGGLDWSAEERKRLAVESRKWKCYKCGLVADLLPELRPKGESGGASSRSSYADQIKELHKLKAKTA 781
            M  +++N AIKRI  DVRE+M +PSDQY AAPLE+N+F+WHFT+RGP DTEFEGG+YHGRIILP +YPF+PP+IM  TPNGRF    KICL+IS+YHPE WQPAWG+RLILEALISF P+   GA+G LD+ AEER+RLA  S  +KC  CG VADLLPEL  + E       S YA+QI +LH    ++A
Sbjct:    1 MAASVRNTAIKRIQGDVREMMTNPSDQYAAAPLETNMFDWHFTLRGPRDTEFEGGIYHGRIILPSDYPFKPPNIMLLTPNGRFEVKKKICLSISAYHPEEWQPAWGVRLILEALISFMPTKGEGAIGALDFPAEERRRLAKLSVDYKCETCGRVADLLPELESENEEETEKKPSKYAEQIAQLHMHSLESA 191
[Close]
BLAST of mRNA_Ecto-sp9_F_contig872.16902.1 vs.
Match: Ubiquitin-conjugating (enzyme E2 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YYG8_9STRA)

HSP 1 Score: 259 bits (661), Expect = 7.790e-77
Identity = 119/184 (64.67%), Postives = 144/184 (78.26%), Query Frame = 2 
Query:  209 MPVNIKNPAIKRIHADVRELMKDPSDQYHAAPLESNLFEWHFTIRGPPDTEFEGGVYHGRIILPPEYPFRPPDIMFNTPNGRFSTGMKICLTISSYHPEHWQPAWGIRLILEALISFFPSPSHGALGGLDWSAEERKRLAVESRKWKCYKCGLVADLLPELRPKGESGGASSRSSYADQIKELH 760
            M  +I N AIKRI ADVRE+M DPSDQY+AAPLESN+F+WHFTIRGP DTEFEGG++HGRI+LP EYPF+PP+I+  TPNGRF    KICL+IS+YHPEHWQPAWG+RLILEALISF P+   GA+G LD++AEERK+LA ES  W C +CG + DL+PE   + +       S YA QI +LH
Sbjct:    1 MASSIGNTAIKRIRADVREMMTDPSDQYYAAPLESNMFDWHFTIRGPRDTEFEGGIFHGRILLPSEYPFKPPNIILLTPNGRFEVKKKICLSISAYHPEHWQPAWGVRLILEALISFMPTKGEGAIGALDFTAEERKKLAKESVVWSCPQCGSIKDLIPEETKRDKP----VESKYASQIAQLH 180
[Close]
BLAST of mRNA_Ecto-sp9_F_contig872.16902.1 vs.
Match: Ubiquitin-conjugating (enzyme n=2 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833S8V9_PHYIN)

HSP 1 Score: 259 bits (663), Expect = 1.550e-76
Identity = 121/192 (63.02%), Postives = 147/192 (76.56%), Query Frame = 2 
Query:  209 MPVNIKNPAIKRIHADVRELMKDPSDQYHAAPLESNLFEWHFTIRGPPDTEFEGGVYHGRIILPPEYPFRPPDIMFNTPNGRFSTGMKICLTISSYHPEHWQPAWGIRLILEALISFFPSPSHGALGGLDWSAEERKRLAVESRKWKCYKCGLVADLLPELRPKGESGGASSR-SSYADQIKELHKLKAKTA 781
            M  +++N AIKRI  DVRE+M +PSDQY AAPLE+N+F+WHFT+RGP DTEFEGG+YHGRIILP +YPF+PP+IM  TPNGRF    KICL+IS+YHPE WQPAWG+RLILEALISF P+   GA+G LD+ AEER+RLA  S  +KC  CG VADLLPEL  + E      + S YA+QI +LH    +TA
Sbjct:   11 MAASVRNTAIKRIQGDVREMMTNPSDQYAAAPLETNMFDWHFTLRGPRDTEFEGGIYHGRIILPSDYPFKPPNIMLLTPNGRFEVKKKICLSISAYHPEEWQPAWGVRLILEALISFMPTKGEGAIGALDFPAEERRRLAKLSVDYKCETCGRVADLLPELESEHEGNEEEKKPSKYAEQIAQLHMHSLETA 202
[Close]
BLAST of mRNA_Ecto-sp9_F_contig872.16902.1 vs.
Match: UBC (core domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EG94_BRELC)

HSP 1 Score: 258 bits (660), Expect = 6.910e-76
Identity = 119/185 (64.32%), Postives = 144/185 (77.84%), Query Frame = 2 
Query:  209 MPVNIKNPAIKRIHADVRELMKDPSDQYHAAPLESNLFEWHFTIRGPPDTEFEGGVYHGRIILPPEYPFRPPDIMFNTPNGRFSTGMKICLTISSYHPEHWQPAWGIRLILEALISFFPSPSHGALGGLDWSAEERKRLAVESRKWKCYKCGLVADLLPELRPKGESGGASSR-SSYADQIKELH 760
            M   ++N AIKRI  DVRE+M +PSDQY AAPLE+N+F+WHFT+RGPPD+EFEGG+YHGRIILP +YPF+PP+IM  TPNGRF    KICL+IS+YHPE WQPAWG+RLILEALISF P+   GA+G LD+SA ER+RLA  S  +KC  CG VADLLPEL+   E      + S YA+QI +LH
Sbjct:    1 MVAGVRNTAIKRIQGDVREMMTNPSDQYDAAPLETNMFDWHFTLRGPPDSEFEGGIYHGRIILPSDYPFKPPNIMLLTPNGRFEVKKKICLSISAYHPEEWQPAWGVRLILEALISFMPTKGEGAIGALDFSAAERRRLAKLSVDFKCETCGRVADLLPELKAGNEEKEVEKKPSKYAEQIAQLH 185
[Close]
BLAST of mRNA_Ecto-sp9_F_contig872.16902.1 vs.
Match: UBC (core domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XT22_9STRA)

HSP 1 Score: 257 bits (656), Expect = 7.160e-76
Identity = 119/184 (64.67%), Postives = 141/184 (76.63%), Query Frame = 2 
Query:  209 MPVNIKNPAIKRIHADVRELMKDPSDQYHAAPLESNLFEWHFTIRGPPDTEFEGGVYHGRIILPPEYPFRPPDIMFNTPNGRFSTGMKICLTISSYHPEHWQPAWGIRLILEALISFFPSPSHGALGGLDWSAEERKRLAVESRKWKCYKCGLVADLLPELRPKGESGGASSRSSYADQIKELH 760
            M  +I N AIKRI ADVRE+M DPSDQY A PLE N+F+WHFTIRGP DT FEGGVYHGRI+LP +YPF+PP+I+  TPNGRF    KICL+IS+YHPEHWQPAWG+RLILEALISF P+   GA+G LD++A+ERK LA ES  W C +CG V DL+PE +P+     A   S YA QI +LH
Sbjct:    1 MSGSIGNTAIKRIRADVREMMTDPSDQYFATPLEDNMFDWHFTIRGPRDTPFEGGVYHGRILLPADYPFKPPNIILLTPNGRFEVKKKICLSISAYHPEHWQPAWGVRLILEALISFMPTKGEGAIGALDFTADERKALAKESVNWSCPQCGSVKDLIPEEKPRDT---APVESKYASQIAQLH 181
[Close]
BLAST of mRNA_Ecto-sp9_F_contig872.16902.1 vs.
Match: UBC (core domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3ZHH9_9STRA)

HSP 1 Score: 258 bits (658), Expect = 9.060e-76
Identity = 122/198 (61.62%), Postives = 152/198 (76.77%), Query Frame = 2 
Query:  209 MPVNIKNPAIKRIHADVRELMKDPSDQYHAAPLESNLFEWHFTIRGPPDTEFEGGVYHGRIILPPEYPFRPPDIMFNTPNGRFSTGMKICLTISSYHPEHWQPAWGIRLILEALISFFPSPSHGALGGLDWSAEERKRLAVESRKWKCYKCGLVADLLPELRPKGESGGASSR--SSYADQIKELHKLKAKTADEVAA 796
            M  +++N AIKRI  DVRE+M +PSDQY AAPLE+N+F+WHFT+RGP +TEFEGG+YHGRIILP +YPF+PP+IM  TPNGRF    KICL+IS+YHPE WQPAWG+RLILEALISF P+   GA+G LD+ AEERKRLA  S  +KC  CG VADLLPE+    E+GG + +  S YA+QI +LH    ++A   +A
Sbjct:    1 MAASVRNTAIKRIQGDVREMMTNPSDQYAAAPLETNMFDWHFTLRGPRNTEFEGGIYHGRIILPSDYPFKPPNIMLLTPNGRFEVKKKICLSISAYHPEEWQPAWGVRLILEALISFMPTKGEGAIGALDFPAEERKRLAKLSVDYKCETCGRVADLLPEVET--ENGGEAEKKPSKYAEQIAQLHMHNLESAPPASA 196
[Close]
BLAST of mRNA_Ecto-sp9_F_contig872.16902.1 vs.
Match: UBC (core domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329S705_9STRA)

HSP 1 Score: 257 bits (657), Expect = 1.150e-75
Identity = 120/192 (62.50%), Postives = 146/192 (76.04%), Query Frame = 2 
Query:  209 MPVNIKNPAIKRIHADVRELMKDPSDQYHAAPLESNLFEWHFTIRGPPDTEFEGGVYHGRIILPPEYPFRPPDIMFNTPNGRFSTGMKICLTISSYHPEHWQPAWGIRLILEALISFFPSPSHGALGGLDWSAEERKRLAVESRKWKCYKCGLVADLLPELRPKGESGGASSR-SSYADQIKELHKLKAKTA 781
            M  +++N AIKRI  DVRE+M +PSDQY AAPLE+N+F+WHFT+RGP DTEFE G+YHGRIILP +YPF+PP+IM  TPNGRF    KICL+IS+YHPE WQPAWG+RLILEALISF P+   GA+G LD+ AEER+RLA  S  +KC  CG VADLLPEL  + E      + S YA+QI +LH    +TA
Sbjct:    1 MAASVRNTAIKRIQGDVREMMTNPSDQYAAAPLETNMFDWHFTLRGPRDTEFEDGIYHGRIILPSDYPFKPPNIMLLTPNGRFEVKKKICLSISAYHPEEWQPAWGVRLILEALISFMPTKGEGAIGALDFPAEERRRLAKLSVDYKCETCGRVADLLPELESENEEKEVEKKPSKYAEQIAQLHMHSLETA 192
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig872.16902.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UBC1.940e-20190.03core domain-containing protein n=2 Tax=Ectocarpus ... [more]
Ubiquitin-conjugating1.330e-8071.86enzyme E2 J1 n=2 Tax=Nannochloropsis gaditana TaxI... [more]
Uncharacterized1.930e-7862.56protein n=1 Tax=Pythium oligandrum TaxID=41045 Rep... [more]
UBC2.870e-7762.83core domain-containing protein n=19 Tax=Phytophtho... [more]
Ubiquitin-conjugating7.790e-7764.67enzyme E2 n=1 Tax=Achlya hypogyna TaxID=1202772 Re... [more]
Ubiquitin-conjugating1.550e-7663.02enzyme n=2 Tax=Phytophthora infestans TaxID=4787 R... [more]
UBC6.910e-7664.32core domain-containing protein n=1 Tax=Bremia lact... [more]
UBC7.160e-7664.67core domain-containing protein n=1 Tax=Aphanomyces... [more]
UBC9.060e-7661.62core domain-containing protein n=5 Tax=Phytophthor... [more]
UBC1.150e-7562.50core domain-containing protein n=2 Tax=Phytophthor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig872contigEcto-sp9_F_contig872:729..4191 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score566.6
Seed ortholog evalue7.8e-159
Seed eggNOG ortholog2880.D7FUW7
Preferred nameUBC32
KEGG koko:K10578
KEGG Pathwayko04120,ko04141,ko05012,map04120,map04141,map05012
GOsGO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0012505,GO:0016020,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019899,GO:0019941,GO:0030163,GO:0031625,GO:0032446,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044424,GO:0044444,GO:0044464,GO:0048471,GO:0051603,GO:0061630,GO:0061659,GO:0070647,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.protein modification by small protein conjugation
EggNOG OGsCOG5078@1,KOG0428@2759
EC2.3.2.23
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionUbiquitin-conjugating enzyme E2
Ec32 orthologEc-26_004480.1
Exons3
Model size2302
Cds size1026
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig872.16902.1prot_Ecto-sp9_F_contig872.16902.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig872 1797..3983 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930918.1558957-UTR-Ecto-sp9_F_contig872:728..17961622930918.1558957-UTR-Ecto-sp9_F_contig872:728..1796Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig872 729..1796 -
1692278948.443052-UTR-Ecto-sp9_F_contig872:728..17961692278948.443052-UTR-Ecto-sp9_F_contig872:728..1796Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig872 729..1796 -
1622930918.2359676-UTR-Ecto-sp9_F_contig872:3983..41911622930918.2359676-UTR-Ecto-sp9_F_contig872:3983..4191Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig872 3984..4191 -
1692278948.4976993-UTR-Ecto-sp9_F_contig872:3983..41911692278948.4976993-UTR-Ecto-sp9_F_contig872:3983..4191Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig872 3984..4191 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930918.176999-CDS-Ecto-sp9_F_contig872:1796..24121622930918.176999-CDS-Ecto-sp9_F_contig872:1796..2412Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig872 1797..2412 -
1692278948.4585717-CDS-Ecto-sp9_F_contig872:1796..24121692278948.4585717-CDS-Ecto-sp9_F_contig872:1796..2412Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig872 1797..2412 -
1622930918.1988223-CDS-Ecto-sp9_F_contig872:2987..30911622930918.1988223-CDS-Ecto-sp9_F_contig872:2987..3091Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig872 2988..3091 -
1692278948.470647-CDS-Ecto-sp9_F_contig872:2987..30911692278948.470647-CDS-Ecto-sp9_F_contig872:2987..3091Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig872 2988..3091 -
1622930918.2170079-CDS-Ecto-sp9_F_contig872:3677..39831622930918.2170079-CDS-Ecto-sp9_F_contig872:3677..3983Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig872 3678..3983 -
1692278948.482993-CDS-Ecto-sp9_F_contig872:3677..39831692278948.482993-CDS-Ecto-sp9_F_contig872:3677..3983Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig872 3678..3983 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig872.16902.1

>prot_Ecto-sp9_F_contig872.16902.1 ID=prot_Ecto-sp9_F_contig872.16902.1|Name=mRNA_Ecto-sp9_F_contig872.16902.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=342bp
MPVNIKNPAIKRIHADVRELMKDPSDQYHAAPLESNLFEWHFTIRGPPDT
EFEGGVYHGRIILPPEYPFRPPDIMFNTPNGRFSTGMKICLTISSYHPEH
WQPAWGIRLILEALISFFPSPSHGALGGLDWSAEERKRLAVESRKWKCYK
CGLVADLLPELRPKGESGGASSRSSYADQIKELHKLKAKTADEVAAESPV
AAAAAAAASDDREPGTTVSESPSGKIASTKKEAEVIAQASGEKRGGISTI
SETTATTAPSSPRLRSGGGAPAERGGDPTPSPANARGASEVEGNQGQQQQ
QESREDDLGREDDVLSFVAVAIALAIVGILVRKALRLAEVI*
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mRNA from alignment at Ecto-sp9_F_contig872:729..4191-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig872.16902.1 ID=mRNA_Ecto-sp9_F_contig872.16902.1|Name=mRNA_Ecto-sp9_F_contig872.16902.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3463bp|location=Sequence derived from alignment at Ecto-sp9_F_contig872:729..4191- (Ectocarpus species9 EcSCA_722f female)
CTTCCACGTGGCGAGTTCCACACAAACCTAGTAGGACACCAACAGGAGCA
TAGGCCTCTCATTCGACGCTTCCAGTCTATACAGTAACGATACGCCGTCG
GTCATCGTGCTCGACGAACGCGAGTCCGGTTGACCTAGTACACGAGCGGA
CACTTCTTTCAACACACGTTTCTGTCGGCAGCACAGCAGCGGAGCGAGGT
TGAAGAAGATGCCGGTGAACATCAAGAATCCGGCCATCAAGCGTATACAC
GCCGACGTGCGGGAGCTTATGAAGGACCCTTCCGACCAGTACCACGCCGC
GCCCCTCGAGTCCAACCTGTTCGAGTGGCACTTCACCATCAGGGGCCCGC
CCGACACAGAGTTCGAGGGAGGGGTTTACCACGGCCGAATCATCCTCCCG
CCGGAGTACCCCTTCCGGCCGCCGGACATCATGTTCAACACACCCAACGG
GAGGTTCAGCACCGGCATGAAGATCTGCTTGACGATCTCGTCTTACCATC
CCGAGCACTGGCAGGTCTGCGACAGCAGTAGTGATTTTGAGACGACTTTG
CAAGAGACAGACTTTTGGGATTGTATATTGCTTAGTTCGTTGCCTTGTTA
CTGACCGATGCTGCTGTAGCATCTACCTGCAGGCTCTAGGTCTACAAGGT
TGCCTGCCCATGAGAATGAGGAGGCGTAGATGCCAAGCATGTCTCATTCT
TCCCTGGTACTGCACTCACCGAGGACGCACCCGTATGCAGGCGAGGAGTA
TGCCCTCAATCCCGTGGTGCAGAGTAGCCATACATTGCGATTGTTCCAAC
AATGAAATATGGTGCGTACGAACGTACGGCGTTCGGTTCCTCCGCGTTTT
TGGCGTGGGGATCAACGACGTCAGACACTTTCAGTACACCTCCAACATTC
CATCTCGCGACAATTCTTAATCTTCGAGCGCATCCAATAGCAAGAGCAAC
TACGAAGAAGTACAGCTGCAGTCGTGCGCGCAACTTTCCCAACCCGGCAA
AGGGTAGTGAAAATGGACGTCTCTCGTGCCGTTATACATCAAAGACGATG
ACCGACCCTGCTCCGATTTCTCCCGTTACCGTCGAATGTTTTCGCCGCAG
CCGGCATGGGGTATCCGCCTCATCTTGGAGGCGTTGATTAGCTTCTTCCC
CTCGCCCTCGCACGGTGCTTTGGGGGGCTTGGACTGGTCCGCGGAGGAGC
GCAAGTGAGTCTAGAAATTATCATACGGCCGGCGTCTTGCATTGCGTTTG
AGAGCGGATGAGAGGCTCTGGCGTGACGTGATGCAAGAGTACCTCAGACC
TTGGCTCTTGGCAAGCATTTGACTCTTTCGAACCGGACTGCTGTCGGTTT
CACCTTTGTTGTTTCGGGACATCGAGATGCCACGGCCGAAAGATACCTCT
TCAGAACAAAAAGAGTAGAGTAAAGTCTGCCCCTCTCGGGCGTGGGAATG
TATTTAGCTGGAGGCTTCCTTTCTTCGTCTTTGATCGTCCAGGCGTGCGC
TGCTTGCACTTGGTGCTGTTCTTCGCCACGTCGACGCATGCTATCCGCGC
GCTGGCTTCCAAGTACCGGTGTGGTGTGGGATTACCGTCGTGCGTGATGT
CGTCCCATGGGGACCAGTCTAGCACCTTCCCTAATTCGTTTCATCACCCC
AATGCATCGGCCCCCTCCGCCGCAGCCCCCCCCTCCTTCGGCCGTGCTGA
AGTGACATATACTGTACGGAACACATTATATATCCGGTTTATAACCCGCG
TTGCAACCGAAATGGCGGACGTTTTTCAGGCGATTAGCCGTGGAGTCGAG
AAAGTGGAAGTGCTACAAGTGCGGGTTAGTCGCCGACCTCCTTCCCGAGC
TCCGGCCCAAGGGCGAGAGCGGCGGCGCGAGCAGCCGCAGCAGCTACGCG
GACCAGATCAAAGAGCTGCACAAGCTCAAGGCAAAGACTGCCGACGAGGT
AGCCGCAGAGTCTCCTGTCGCTGCCGCTGCTGCTGCAGCGGCTAGTGATG
ACCGTGAACCTGGCACTACCGTCAGCGAGTCTCCCAGCGGAAAGATTGCT
TCTACGAAAAAAGAGGCGGAGGTGATAGCGCAAGCCTCCGGCGAAAAACG
CGGTGGAATCAGTACCATTTCGGAGACGACGGCGACGACGGCTCCGTCAA
GTCCTCGGCTCCGGAGCGGGGGCGGGGCGCCGGCGGAGAGAGGGGGCGAT
CCGACGCCGTCCCCTGCCAACGCCAGGGGTGCGAGCGAGGTAGAGGGGAA
CCAGGGGCAGCAGCAGCAGCAGGAGTCGAGAGAAGATGACCTTGGGCGGG
AGGACGACGTGCTTTCGTTTGTCGCCGTTGCTATCGCCCTCGCGATCGTC
GGGATTTTGGTCCGGAAGGCCCTACGCCTTGCTGAGGTGATCTGAACGCT
CCGCTCGCGGAAAATGTGTTTTTTCCTTGCGATGGCGGCGGTGGCATGGA
AGGGAGCGCTCAGAGACTGTTGTGTATACCGAGGCCCTTGTTTGATGTTG
TGGCACAACGAGCAGTACCATGGTAACGTGGTACCAAAATGCGTGTGCTT
CCGTGGTGAACTGTTTTGGTTGTACAGAGAGTGCGGTGGTGATGTTTGTG
TGAGTGGCAGAACGACAGCAACGGGAAAGCAGTTTGTGTTTGTTCCTACT
TGGTACGTACAAATGACTGTGAGACGTAGTCGCTAGGTTTTCCTGCAGCG
GGGAGAGGGATAGCCCCGGTCAAACCTCCACCCCACAATGTAAAAGTAAA
AAATACCAAATTTTAATCACAAATTGAGGTTTGCAGCGCGATGTTCTTGA
TTTGTCAAAGCTGTGGCAGTTGCTTGGAAGGATCCGCACCCCGTACGTTG
TTGCGACTACCAAAACCTTTCTGTGTTGGGACGATGACCGTCTTGTATAC
TTATCGCTGGAGATAGGTGTTCCTGTCATTTTACCTGTAAGTGGCCAAAA
GTTGGTTTGTCTGTTGGGTGGCGTTGTCTAATGAAGGTGCTTGCAGTGAG
CTAACTTTCTCCGAATGCCAGCGGACGGTGTGCGTGCGGCTTAAAACCAC
CGAATGCGTCTGCTCGTCTGGAGGTACAGGCTGATTTACCGCTGCTAGCT
GTTGTTCGTCTCGAGGTCCACGTGCTTCTCCAGGTCTCGGTCGACATCCT
GCTAGAAAGCAAAGCCGACGAATCAATTGCACGCTTCGGGTTTGTTCGTG
ATAGCTGAGCCGTGCATTCGATTAAGAGAGAGAGCTGTCGCTTGGTTGTG
CCGCATATTCGTGACGTTCGCGAAGCGTCACCACACCAACGCGCCGAACC
GAAACACGCGCGAGAGCTATTCATACCACTTTGTTCCGGTGACACAAACG
CCACACTCGGATTGGCAGCAGATTTTGGTAGGGTGTGGCCGCAGAATCCC
TTTCCCGCCAGTCAGGTCTCTTGCTCTGTACCACAGGGGGGGCGCTTGTT
TCGTGGATGCGTG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig872:729..4191-

>mRNA_Ecto-sp9_F_contig872.16902.1 ID=mRNA_Ecto-sp9_F_contig872.16902.1|Name=mRNA_Ecto-sp9_F_contig872.16902.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2052bp|location=Sequence derived from alignment at Ecto-sp9_F_contig872:729..4191- (Ectocarpus species9 EcSCA_722f female)
ATGCCGGTGAACATCAAGAATCCGGCCATCAAGCGTATACACGCCGACGT
GCGGGAGCTTATGAAGGACCCTTCCGACCAGTACCACGCCGCGCCCCTCG
AGTCCAACCTGTTCGAGTGGCACTTCACCATCAGGGGCCCGCCCGACACA
GAGTTCGAGGGAGGGGTTTACCACGGCCGAATCATCCTCCCGCCGGAGTA
CCCCTTCCGGCCGCCGGACATCATGTTCAACACACCCAACGGGAGGTTCA
GCACCGGCATGAAGATCTGCTTGACGATCTCGTCTTACCATCCCGAGCAC
TGGCAGATGCCGGTGAACATCAAGAATCCGGCCATCAAGCGTATACACGC
CGACGTGCGGGAGCTTATGAAGGACCCTTCCGACCAGTACCACGCCGCGC
CCCTCGAGTCCAACCTGTTCGAGTGGCACTTCACCATCAGGGGCCCGCCC
GACACAGAGTTCGAGGGAGGGGTTTACCACGGCCGAATCATCCTCCCGCC
GGAGTACCCCTTCCGGCCGCCGGACATCATGTTCAACACACCCAACGGGA
GGTTCAGCACCGGCATGAAGATCTGCTTGACGATCTCGTCTTACCATCCC
GAGCACTGGCAGCCGGCATGGGGTATCCGCCTCATCTTGGAGGCGTTGAT
TAGCTTCTTCCCCTCGCCCTCGCACGGTGCTTTGGGGGGCTTGGACTGGT
CCGCGGAGGAGCGCAACCGGCATGGGGTATCCGCCTCATCTTGGAGGCGT
TGATTAGCTTCTTCCCCTCGCCCTCGCACGGTGCTTTGGGGGGCTTGGAC
TGGTCCGCGGAGGAGCGCAAGCGATTAGCCGTGGAGTCGAGAAAGTGGAA
GTGCTACAAGTGCGGGTTAGTCGCCGACCTCCTTCCCGAGCTCCGGCCCA
AGGGCGAGAGCGGCGGCGCGAGCAGCCGCAGCAGCTACGCGGACCAGATC
AAAGAGCTGCACAAGCTCAAGGCAAAGACTGCCGACGAGGTAGCCGCAGA
GTCTCCTGTCGCTGCCGCTGCTGCTGCAGCGGCTAGTGATGACCGTGAAC
CTGGCACTACCGTCAGCGAGTCTCCCAGCGGAAAGATTGCTTCTACGAAA
AAAGAGGCGGAGGTGATAGCGCAAGCCTCCGGCGAAAAACGCGGTGGAAT
CAGTACCATTTCGGAGACGACGGCGACGACGGCTCCGTCAAGTCCTCGGC
TCCGGAGCGGGGGCGGGGCGCCGGCGGAGAGAGGGGGCGATCCGACGCCG
TCCCCTGCCAACGCCAGGGGTGCGAGCGAGGTAGAGGGGAACCAGGGGCA
GCAGCAGCAGCAGGAGTCGAGAGAAGATGACCTTGGGCGGGAGGACGACG
TGCTTTCGTTTGTCGCCGTTGCTATCGCCCTCGCGATCGTCGGGATTTTG
GTCCGGAAGGCCCTACGCCTTGCTGAGGTGATCTGAGCGATTAGCCGTGG
AGTCGAGAAAGTGGAAGTGCTACAAGTGCGGGTTAGTCGCCGACCTCCTT
CCCGAGCTCCGGCCCAAGGGCGAGAGCGGCGGCGCGAGCAGCCGCAGCAG
CTACGCGGACCAGATCAAAGAGCTGCACAAGCTCAAGGCAAAGACTGCCG
ACGAGGTAGCCGCAGAGTCTCCTGTCGCTGCCGCTGCTGCTGCAGCGGCT
AGTGATGACCGTGAACCTGGCACTACCGTCAGCGAGTCTCCCAGCGGAAA
GATTGCTTCTACGAAAAAAGAGGCGGAGGTGATAGCGCAAGCCTCCGGCG
AAAAACGCGGTGGAATCAGTACCATTTCGGAGACGACGGCGACGACGGCT
CCGTCAAGTCCTCGGCTCCGGAGCGGGGGCGGGGCGCCGGCGGAGAGAGG
GGGCGATCCGACGCCGTCCCCTGCCAACGCCAGGGGTGCGAGCGAGGTAG
AGGGGAACCAGGGGCAGCAGCAGCAGCAGGAGTCGAGAGAAGATGACCTT
GGGCGGGAGGACGACGTGCTTTCGTTTGTCGCCGTTGCTATCGCCCTCGC
GATCGTCGGGATTTTGGTCCGGAAGGCCCTACGCCTTGCTGAGGTGATCT
GA
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