mRNA_Ecto-sp9_F_contig8717.16899.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig8717.16899.1
Unique NamemRNA_Ecto-sp9_F_contig8717.16899.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig8717.16899.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZG0_ECTSI)

HSP 1 Score: 359 bits (922), Expect = 1.330e-119
Identity = 219/237 (92.41%), Postives = 223/237 (94.09%), Query Frame = 1 
Query:    1 DGTWGPNTKMFVNAVGMHPDRLTNMYFTYVFVLRAIGKARPFLMAYEYDTGNDEDDKMTRQLINELVSAEQEKEAGMVSVDNDIRRDDSVPMCLRGFDEKGLFGDASGDAVFEAGQEDGSMALKQEFMHKFHNISRIMDCVGCEKCKVKQKGAQVGKRAALAAILALAALGGGSYLLRKRAVAGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--GMRRRQKKAPVSGHED 705
            DGTWGPNTKMFVNAVGMHPDRLTNMYFTYVFVLRAIGKARPFLMAYEYDTGNDEDDKMTRQLINELVSAEQEKEAGMVSVDND+RRDDSVPMCL+GFDEKGLFGD SGD VFEAG EDGSMALKQEFMHKFHNISRIMDCVGCEKCKVKQKGAQVGKRAALAAILALAALGGG+YLLRK      XXXXXXXXXX   XXXXXXXXXXXXXXXXXXXXX  G+RRRQKKAPVSGHED
Sbjct:  290 DGTWGPNTKMFVNAVGMHPDRLTNMYFTYVFVLRAIGKARPFLMAYEYDTGNDEDDKMTRQLINELVSAEQEKEAGMVSVDNDMRRDDSVPMCLKGFDEKGLFGDVSGDVVFEAGHEDGSMALKQEFMHKFHNISRIMDCVGCEKCKVKQKGAQVGKRAALAAILALAALGGGAYLLRKXXXXXXXXXXXXXXXXEGTXXXXXXXXXXXXXXXXXXXXXXSGVRRRQKKAPVSGHED 526
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BLAST of mRNA_Ecto-sp9_F_contig8717.16899.1 vs.
Match: Putative (endoplasmic oxidoreductin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS22_9STRA)

HSP 1 Score: 128 bits (321), Expect = 1.490e-30
Identity = 78/183 (42.62%), Postives = 106/183 (57.92%), Query Frame = 1 
Query:    1 DGTWGPNTKMFVNAVGMHPDRLTNMYFTYVFVLRAIGKARPFLMAYEYDTGNDEDDKMTRQLINELVSAEQEKEA-----GMVSVDNDIRRDD-----SVP--MCLRGFDEKGLFGDASG-----DAVFEAGQEDGSMALKQEFMHKFHNISRIMDCVGCEKCKVKQKGAQVGKRAALAAILA 498
            +G +GPN + F  AVG HPDRLTNMYF Y+F+LRA+ KA P L  Y+Y TGN  +D  T QL+  LV  + E        G V++ N           + P  +C+ GF+E G+F   +      DAV+    E+    L+++F+ KFHNISRIMDCVGCEKCK+  K   +G   A+  +LA
Sbjct:  278 NGRYGPNVEFFTRAVGAHPDRLTNMYFAYLFLLRALAKAAPVLKHYDYATGNAREDAHTMQLLQALVDHQSEPSLPQLANGAVTLFNGXXXXXXXXXXAAPHTLCMGGFNETGMFEVEAAQRSPLDAVYARELEE-KRELREQFVAKFHNISRIMDCVGCEKCKMWGKLETLGIGTAIKILLA 459
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BLAST of mRNA_Ecto-sp9_F_contig8717.16899.1 vs.
Match: Endoplasmic (oxidoreductin-2 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U2W8_9STRA)

HSP 1 Score: 127 bits (320), Expect = 1.590e-30
Identity = 69/164 (42.07%), Postives = 93/164 (56.71%), Query Frame = 1 
Query:   10 WGPNTKMFVNAVGMHPDRLTNMYFTYVFVLRAIGKARPFLMAYEYDTGNDEDDKMTRQLINELVSAEQEKEAGMVSVDNDIRRDDSVPMCLRGFDEKGLFGDAS-GDAVFEAGQEDGSM-ALKQEFMHKFHNISRIMDCVGCEKCKVKQKGAQVGKRAALAAIL 495
            W PNT +FV  VG HP+R+ N+YFTY+F+LRAI KA P L+ Y+YDTGN EDD+  R  +  LV                     +   C R FDE G+F      D    A +E+  +  L+Q+F  +FHNISR+MDCVGCEKC++  K   +G   A+  +L
Sbjct:  268 WFPNTALFVEKVGKHPERIHNLYFTYLFLLRAINKAGPELLLYDYDTGNSEDDECVRSAVQNLVRTSSNTS--------------TADQCHRAFDESGMFQPRGLTDGAEAAAEEERELHKLRQDFFVRFHNISRVMDCVGCEKCRLWGKLQILGLGTAIKIVL 417
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BLAST of mRNA_Ecto-sp9_F_contig8717.16899.1 vs.
Match: Hypothetical (protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DCT6_9STRA)

HSP 1 Score: 123 bits (308), Expect = 6.680e-29
Identity = 66/155 (42.58%), Postives = 91/155 (58.71%), Query Frame = 1 
Query:    4 GTWGPNTKMFVNAVGMHPDRLTNMYFTYVFVLRAIGKARPFLMAYEYDTGNDEDDKMTRQLINELVSAEQEKEAGMVSVDNDIRRDDSVPMCLRGFDEKGLFGDASGDAVFEAGQED--------GSMALKQEFMHKFHNISRIMDCVGCEKCKV 444
            G WGPNT++FV+ VG H DRL N+YFTY+F+LRA+ KA P L A  +DTG+ E+D  +R L+  LV  +             +    +  +C RGFDE  LF     D+  E G  +         ++ L++EF  +F NISRIMDCVGCEKC++
Sbjct:  270 GHWGPNTQLFVDRVGRHSDRLHNLYFTYLFLLRALAKAAPALEASHFDTGHAEEDSRSRALVRALVRPDHPL----------LDASQAAQVCQRGFDESRLF---QMDSELEEGMTEFEQYMAMRRTLELRKEFQERFRNISRIMDCVGCEKCRL 411
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BLAST of mRNA_Ecto-sp9_F_contig8717.16899.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CNX9_9STRA)

HSP 1 Score: 121 bits (303), Expect = 2.010e-28
Identity = 70/166 (42.17%), Postives = 89/166 (53.61%), Query Frame = 1 
Query:    1 DGTWGPNTKMFVNAVGMHPDRLTNMYFTYVFVLRAIGKARPFLMAYEYDTGNDEDDKMTRQLINELVSAEQEKEAGMVSVDNDIRRDDSVPMCLRGFDEKGLFGDASGDAVFEA-----GQED-------------GSMALKQEFMHKFHNISRIMDCVGCEKCKV 444
            DGT+GPN  +++  +G HPDRL N+YFTY+FV+RAI KA+P L     +TG  +DD+ TR+L+  L S E                   VP  LRGFDE  +F   + + V E      G ED                 LK  F  KFHNISRIMDCVGCEKC++
Sbjct:  233 DGTFGPNLDLYLRMIGRHPDRLKNLYFTYLFVMRAIAKAKPILEGLLVNTGVPDDDQRTRELLASLTSQE-------------------VPAVLRGFDESSMFKVKAEELVAECPPVLHGLEDLHDLQHRYVDEAAKKAKLKDSFRAKFHNISRIMDCVGCEKCRL 379
[Close]
BLAST of mRNA_Ecto-sp9_F_contig8717.16899.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C292_PYTOL)

HSP 1 Score: 119 bits (299), Expect = 1.310e-27
Identity = 70/171 (40.94%), Postives = 98/171 (57.31%), Query Frame = 1 
Query:   10 WGPNTKMFVNAVGMHPDRLTNMYFTYVFVLRAIGKARPFLMAYEYDTGNDEDDKMTRQLINELVSAEQEKEAGMVSVDNDIRRDDSVPM----CLRGFDEKGLF----GDASGDAVFEAGQEDGSMALKQEFMHKFHNISRIMDCVGCEKCKVKQKGAQVGKRAALAAILA 498
            WGPN  +FV+ VG HP+RL N+YF Y+FV+RAIG+ R  L++Y++ TGND DD+  R+++  LV               D +R  S P      L GFDE+ LF    G  S D   +A ++   + L  +F  KF N+SRIMDCV CEKC++  K   +G   A+  +LA
Sbjct:  285 WGPNPSLFVHRVGKHPERLQNLYFVYLFVMRAIGRYRDELLSYDFTTGNDADDQRLREILKLLVV--------------DDKRHSSCPSEQKSVLSGFDERALFRVQRGGMSYDQYVDAKEQKRELEL--QFREKFQNVSRIMDCVTCEKCRLWGKLQTMGLGTAIKILLA 439
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BLAST of mRNA_Ecto-sp9_F_contig8717.16899.1 vs.
Match: Hypothetical (protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TVZ6_9STRA)

HSP 1 Score: 120 bits (300), Expect = 1.530e-27
Identity = 66/152 (43.42%), Postives = 88/152 (57.89%), Query Frame = 1 
Query:    4 GTWGPNTKMFVNAVGMHPDRLTNMYFTYVFVLRAIGKARPFLMAYEYDTGNDEDDKMTRQLINELVSAEQEKEAGMV--SVDNDIRRDDSVPMCLRGFDEKGLFGDASGDAVFEA---GQEDGSMALKQEFMHKFHNISRIMDCVGCEKCKV 444
            G WG N  +    V  H DR+ N+YF Y+F+LRAI KA P L +Y+Y TGN   DK T +L++ELV+A  +  AG V       +   D VP C  GFDE  +FG  SG    +     +   ++ L+ +   KF NISRIMDCVGCEKC++
Sbjct:  348 GEWGTNVDLLTRRVLKHDDRVENLYFLYLFLLRAITKASPALTSYDYTTGNVAADKRTAELVSELVAASDDAGAGAVPSQASGSVEGAD-VPRCCHGFDESRMFGGWSGGVEPDEKWWSEHSETVQLRAQLQLKFQNISRIMDCVGCEKCRL 498
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BLAST of mRNA_Ecto-sp9_F_contig8717.16899.1 vs.
Match: Hypothetical (protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U445_9STRA)

HSP 1 Score: 119 bits (297), Expect = 2.990e-27
Identity = 72/168 (42.86%), Postives = 92/168 (54.76%), Query Frame = 1 
Query:    4 GTWGPNTKMFVNAVGMHPDRLTNMYFTYVFVLRAIGKARPFLMAYEYDTGNDEDDKMTRQLINELVSAEQEKEAGMVSVDNDIRRDDSVPMCLRGFDEKGLFGDASGDAVFEAGQEDG--------SMALKQEFMHKFHNISRIMDCVGCEKCKVKQKGAQVGKRAAL 483
            G WG N  +  N V  H DR  N+YF Y+F+LRAI K  P L+A+ Y TGN EDD+ TR L+  LV+A  + EA  +S  + +   D VP C  GFDE  +F     D   +    D         +M LK +   KF NISRIMDCVGCEKC++  K   +G   AL
Sbjct:  292 GKWGTNVDLLTNGVLRHKDRTENLYFLYLFLLRAITKGGPDLLAHNYTTGNIEDDRFTRSLMTTLVAASGD-EASEIS--SSLASAD-VPRCCHGFDETAMFAGWGSDLATDDKHRDQDWWEERSENMKLKVQLQQKFQNISRIMDCVGCEKCRLWGKLQVLGVGTAL 455
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BLAST of mRNA_Ecto-sp9_F_contig8717.16899.1 vs.
Match: Uncharacterized (protein n=1 Tax=Glomus cerebriforme TaxID=658196 RepID=A0A397T6B9_9GLOM)

HSP 1 Score: 115 bits (287), Expect = 4.590e-26
Identity = 60/147 (40.82%), Postives = 80/147 (54.42%), Query Frame = 1 
Query:    4 GTWGPNTKMFVNAVGMHPDRLTNMYFTYVFVLRAIGKARPFLMAYEYDTGNDEDDKMTRQLINELVSAEQEKEAGMVSVDNDIRRDDSVPMCLRGFDEKGLFGDASGDAVFEAGQEDGSMALKQEFMHKFHNISRIMDCVGCEKCKV 444
            G WGPN + FV+ VG HP+RL N+YF Y+F+LRAI KA  +L  YE+ TG+   D   + +++ELV+A                       C   FDEK +F               GS  LK+EF  KF N+SRIMDCVGC+KC++
Sbjct:  268 GQWGPNLECFVDRVGSHPERLQNVYFNYIFLLRAISKAADYLTGYEFCTGDKIQDSQVKTMVSELVNA--------------------ARSCPETFDEKQMFASP------------GSRLLKEEFKAKFRNVSRIMDCVGCDKCRL 382
[Close]
BLAST of mRNA_Ecto-sp9_F_contig8717.16899.1 vs.
Match: Uncharacterized (protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067DAD7_SAPPC)

HSP 1 Score: 114 bits (284), Expect = 1.110e-25
Identity = 69/163 (42.33%), Postives = 89/163 (54.60%), Query Frame = 1 
Query:   10 WGPNTKMFVNAVGMHPDRLTNMYFTYVFVLRAIGKARPFLMAYEYDTGNDEDDKMTRQLINELVSAEQEKEAGMVSVDNDIRRDDSVPMCLRGFDEKGLFGDASGDAVFEAGQEDGSMALKQEFMHKFHNISRIMDCVGCEKCKVKQKGAQVGKRAALAAILA 498
            WGPNTKMFV+ VG  P+RL NMYFTY+FVLRA+G+ R  L+ Y+Y TGND DD+   +++  L   +            D R        L GF+E  LF       V  A Q D       +F  KF N+SRIMDCV CEKC++  K   +G   A+  +LA
Sbjct:  251 WGPNTKMFVDRVGAFPERLQNMYFTYLFVLRAVGRYREVLLNYDYATGNDYDDQRVPEVLRALFDVDNTAFNASCRAPTDSRA------VLAGFNETMLFS----KGVSVAHQRD-------QFQRKFENVSRIMDCVTCEKCRLWGKIQILGLGTAIKILLA 396
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8717.16899.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized1.330e-11992.41protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZG0... [more]
Putative1.490e-3042.62endoplasmic oxidoreductin n=1 Tax=Tribonema minus ... [more]
Endoplasmic1.590e-3042.07oxidoreductin-2 n=2 Tax=Monodopsidaceae TaxID=4250... [more]
Hypothetical6.680e-2942.58protein n=1 Tax=Dictyocha speculum TaxID=35687 Rep... [more]
Hypothetical2.010e-2842.17protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014... [more]
Uncharacterized1.310e-2740.94protein n=1 Tax=Pythium oligandrum TaxID=41045 Rep... [more]
Hypothetical1.530e-2743.42protein n=2 Tax=Phaeomonas parva TaxID=124430 RepI... [more]
Hypothetical2.990e-2742.86protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=1... [more]
Uncharacterized4.590e-2640.82protein n=1 Tax=Glomus cerebriforme TaxID=658196 R... [more]
Uncharacterized1.110e-2542.33protein n=1 Tax=Saprolegnia parasitica (strain CBS... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8717contigEcto-sp9_F_contig8717:129..4533 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score339.0
Seed ortholog evalue1.8e-90
Seed eggNOG ortholog2880.D7FZG0
Preferred nameERO1LB
KEGG koko:K10950,ko:K10976
KEGG Pathwayko04141,ko05110,map04141,map05110
GOsGO:0001666,GO:0003674,GO:0003756,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005788,GO:0005789,GO:0006082,GO:0006457,GO:0006458,GO:0006464,GO:0006508,GO:0006518,GO:0006520,GO:0006575,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0006915,GO:0006950,GO:0006979,GO:0006986,GO:0007154,GO:0007165,GO:0007204,GO:0007275,GO:0007568,GO:0008150,GO:0008152,GO:0008219,GO:0008593,GO:0009266,GO:0009628,GO:0009966,GO:0009987,GO:0010033,GO:0010260,GO:0010467,GO:0010646,GO:0010817,GO:0012501,GO:0012505,GO:0015035,GO:0015036,GO:0016020,GO:0016021,GO:0016043,GO:0016485,GO:0016486,GO:0016491,GO:0016667,GO:0016670,GO:0016853,GO:0016860,GO:0016864,GO:0016972,GO:0019471,GO:0019538,GO:0019725,GO:0019752,GO:0022417,GO:0023051,GO:0023052,GO:0030001,GO:0030003,GO:0030070,GO:0030154,GO:0030176,GO:0030198,GO:0030425,GO:0030968,GO:0031224,GO:0031227,GO:0031974,GO:0031984,GO:0032501,GO:0032502,GO:0032879,GO:0033500,GO:0033554,GO:0034220,GO:0034599,GO:0034620,GO:0034641,GO:0034975,GO:0034976,GO:0035556,GO:0035966,GO:0035967,GO:0036211,GO:0036293,GO:0036294,GO:0036477,GO:0042175,GO:0042221,GO:0042445,GO:0042592,GO:0042593,GO:0042995,GO:0043005,GO:0043062,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043436,GO:0043603,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0045444,GO:0045454,GO:0048513,GO:0048519,GO:0048523,GO:0048583,GO:0048731,GO:0048856,GO:0048869,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050873,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051179,GO:0051209,GO:0051234,GO:0051282,GO:0051283,GO:0051480,GO:0051604,GO:0051641,GO:0051649,GO:0051716,GO:0055065,GO:0055074,GO:0055080,GO:0055082,GO:0055085,GO:0055114,GO:0060401,GO:0060402,GO:0061077,GO:0065007,GO:0065008,GO:0070013,GO:0070059,GO:0070482,GO:0070588,GO:0070838,GO:0070887,GO:0071310,GO:0071453,GO:0071456,GO:0071704,GO:0071840,GO:0072503,GO:0072507,GO:0072511,GO:0097190,GO:0097193,GO:0097447,GO:0097458,GO:0097553,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0098827,GO:0120025,GO:0120038,GO:0140096,GO:1901142,GO:1901564,GO:1901605
EggNOG free text desc.protein folding in endoplasmic reticulum
EggNOG OGsCOG5061@1,KOG2608@2759
COG Functional cat.OU
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEndoplasmic reticulum oxidoreductin 1
Ec32 orthologEc-19_003170.1
Exons6
Model size708
Cds size681
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930917.7128713-UTR-Ecto-sp9_F_contig8717:128..1551622930917.7128713-UTR-Ecto-sp9_F_contig8717:128..155Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8717 129..155 +
1692278948.2707376-UTR-Ecto-sp9_F_contig8717:128..1551692278948.2707376-UTR-Ecto-sp9_F_contig8717:128..155Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8717 129..155 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930917.760532-CDS-Ecto-sp9_F_contig8717:155..2601622930917.760532-CDS-Ecto-sp9_F_contig8717:155..260Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8717 156..260 +
1692278948.2827272-CDS-Ecto-sp9_F_contig8717:155..2601692278948.2827272-CDS-Ecto-sp9_F_contig8717:155..260Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8717 156..260 +
1622930917.7855322-CDS-Ecto-sp9_F_contig8717:728..7941622930917.7855322-CDS-Ecto-sp9_F_contig8717:728..794Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8717 729..794 +
1692278948.2935848-CDS-Ecto-sp9_F_contig8717:728..7941692278948.2935848-CDS-Ecto-sp9_F_contig8717:728..794Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8717 729..794 +
1622930917.8305569-CDS-Ecto-sp9_F_contig8717:1598..17481622930917.8305569-CDS-Ecto-sp9_F_contig8717:1598..1748Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8717 1599..1748 +
1692278948.3072934-CDS-Ecto-sp9_F_contig8717:1598..17481692278948.3072934-CDS-Ecto-sp9_F_contig8717:1598..1748Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8717 1599..1748 +
1622930917.8432193-CDS-Ecto-sp9_F_contig8717:2281..23741622930917.8432193-CDS-Ecto-sp9_F_contig8717:2281..2374Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8717 2282..2374 +
1692278948.318395-CDS-Ecto-sp9_F_contig8717:2281..23741692278948.318395-CDS-Ecto-sp9_F_contig8717:2281..2374Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8717 2282..2374 +
1622930917.858-CDS-Ecto-sp9_F_contig8717:3642..38021622930917.858-CDS-Ecto-sp9_F_contig8717:3642..3802Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8717 3643..3802 +
1692278948.332118-CDS-Ecto-sp9_F_contig8717:3642..38021692278948.332118-CDS-Ecto-sp9_F_contig8717:3642..3802Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8717 3643..3802 +
1622930917.8725233-CDS-Ecto-sp9_F_contig8717:4426..45331622930917.8725233-CDS-Ecto-sp9_F_contig8717:4426..4533Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8717 4427..4533 +
1692278948.345485-CDS-Ecto-sp9_F_contig8717:4426..45331692278948.345485-CDS-Ecto-sp9_F_contig8717:4426..4533Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8717 4427..4533 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8717.16899.1prot_Ecto-sp9_F_contig8717.16899.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig8717 156..4533 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig8717.16899.1

>prot_Ecto-sp9_F_contig8717.16899.1 ID=prot_Ecto-sp9_F_contig8717.16899.1|Name=mRNA_Ecto-sp9_F_contig8717.16899.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=227bp
MFVNAVGMHPDRLTNMYFTYVFVLRAIGKARPFLMAYEYDTGNDEDDKMT
RQLINELVSAEQEKEAGMVSVDNDIRRDDSVPMCLRGFDEKGLFGDASGD
AVFEAGQEDGSMALKQEFMHKFHNISRIMDCVGCEKCKVKQKGAQVGKRA
ALAAILALAALGGGSYLLRKRAVAGDGESSSSGGGGGGTGTGTTTPSKAN
GTGNGSGSDSGMRRRQKKAPVSGHED*
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mRNA from alignment at Ecto-sp9_F_contig8717:129..4533+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig8717.16899.1 ID=mRNA_Ecto-sp9_F_contig8717.16899.1|Name=mRNA_Ecto-sp9_F_contig8717.16899.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=4405bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8717:129..4533+ (Ectocarpus species9 EcSCA_722f female)
GACGGCACATGGGGGCCCAACACGAAGATGTTCGTGAACGCCGTGGGCAT
GCACCCTGACCGGCTGACCAACATGTACTTCACCTACGTGTTCGTGCTCA
GGGCGATTGGAAAGGCGCGACCGTTCCTCATGGTACGGAGGACAGAACCG
TAACGAGACCCGCGTGCCTTATATGTGTGATGGCCGTATGCGTGTTCGTG
TTCCGCGTTTCCTCGCTTCTACTCCTCTGTGTTGTTGTTGCTGCTGCTAC
TGCTACTGCTACTGCTGCTGCTGCTGCCGCTTCTTCTTGTGCCCGATGAC
GCCTGCCGTGACTTGCGAGTCTGCGGGTGTTCCGCGTGTTGCATTGCATG
TTCTGTCTGTTGGGAGGGTACCGTGGTCGAAGTCGGCAAGTCCAGCTGTA
GGACCACCGCTGTCTCTCTCTCTCTTGTCGGGTGCTAGGGAAACCATGCC
TGAACTCGTCCATTCTCTCTCTCTCTCTCTCCCTCCCCCTCTCTCCCTCT
CTCTCTCTTTCTCTCTCTCCCGCTTGGTTGCTCCGTGTTTCTGCACGTGG
CGGCGTCTTTCTGCGTGTTTCCACTCTTTTCTTGTTTGTTTCGTTTCCAG
GCGTACGAGTACGACACCGGAAACGACGAGGATGACAAGATGACCCGTCA
GCTAATCAACGAGCTGGTGAGTCGACGCCCTCTGTGTGCTGCTCCGTAGG
TTGCATAAGATAGCACACCCCCTGGACCGATTTTCAAAGCTCGATTACTC
CACGACGAATAGGATGCCGAAAATGAAGTGTACGTTTTCGGAAAGCTCCC
GACGAGACGGTTCCAACGCCGCCGTTTTCGGCACCGTCACTGTTTTTCCT
GTGGAGATTGTGTCGAGCTTCGAAAATCGGTCCAGGGGTGTGATATCTTA
TGCAACCTACGGTATGCGTATCTTCTTCGTTTCTTGCTCGAGCACTGTTT
CGTACGTATGCCAGCACTCTCCTGTGTTTTTTTTGCTGATCCGACACCCC
ATCAGCCGGCCGGCGGGTCGCTATATTGTGCACTCCGTTTCGATCATGTT
GCGAACGAGAAACAGTCAACTTCGAAATCGAATTTTATGGTCGACCCACT
TTTTGGTTGTTGCTGCTGCAAGCGGATTAAGGTCGAAAGCGGGGGAAATG
CTGCCCGTTTCTCTCCGGTGTTTTTTTTTTTTTTGTGTGTGTGTCTTTTG
TATTAGCATCGACCGCGTGAACCGACTGACCAATCAAAGTACGTCAGTCT
CAGTGCGGTGTGTGTGTTTGTGTGTGTGTGTGTGTGTGTTTTCTGTCCTG
CGTTCCCGCCTTCTTCGATGTCGACGGGACTCTTCTCGCGTCGTCTCGGA
AGTCGACCTACGTTATCTCAAGCTCTGATTCCCTGACCGGCTGGCTGCTG
TGCGCCTTCCTCGTAAAATTGTTTGCCGCGCGTGTGTGTGGTGTCTGTCG
TGCTGTTGTTGTCGTGTCAGGTGAGCGCCGAGCAGGAGAAGGAGGCCGGC
ATGGTTAGCGTGGACAACGACATACGGCGCGACGACTCGGTTCCGATGTG
CCTCAGGGGCTTCGACGAGAAGGGGCTGTTCGGCGACGCGAGCGGAGACG
CGGTATTCGAGGCTGGCCAGGTGGGTGAAATTTGCGGATGCTGCTGTTGT
TGTTGTTGGTGGTGGTGGTGGTGGTGGTGGTGTTGTAGTCATTATTGTTG
TTGTTGTTGGTGTGGTTGTTGTTGGTGTGGTTGTTGTTGTTGTTGGTGTT
GGTGTTGGTGTTGTTGTTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGG
TGGTGTGGTTGTTGTTGTTGTTTCAGGCATTGCTCGCTTTTCGCAGTTTA
AAGGGCTGGTAGATGGTGGCGTTATGTGTGTGCCCTATAAAGCAACCGTT
TGCGACGAACAGCCTATATCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CCCCTAGACAAAGATAGCATGAAAAGGTGGCACCGGACGATGAACAGGCA
TGCAACACCTCTCTGTCTATCCTTTTCCCTGTGCTTTCTCTCTCCAGCTA
TTTTCGCTTTTTCCTCCACTGAAACCTTGTGTTTTCCTTACTACTGCTTT
CCGTTCATGTCGTGGCCTGCCGTGCGAATTCCTGTTGGTATACTATATAC
CAGGAGGACGGTTCTATGGCCCTCAAGCAAGAGTTCATGCACAAGTTCCA
CAACATCTCACGCATCATGGACTGCGTCGGCTGCGAGAAGTGCAAGGTTT
GTCCGTTTCTTGGTCTCATGTTTTCTTCATTGTTGGTTCTCGGTAATATT
TACTTTATTTATTTATTTACTTTTTTTTTTTATTATTTTTTTATTTTTTT
CATTCCTGGTTCTCCAGTTTCGTCTCACCGTACCTTGCCTGTATACCTTA
ATTGTGTGCATATCTGTTTTAGATTGTGGGGGGGGGGAGGGGGGTGGGGG
TATCTTTCGGGGCGGGGGGTTGAGTGCACCCTCTTGTAAAATGGTGTGCT
GGTTCGTTCTGCCCTCTTTTTGCCCTGAGGAGTGGCCAAGAAGTTCTCCT
GGTGCTATTCCTTTCATGCTTCACCGAGCCCGCTTGGTATGTCTCCTTCC
CTTGTGCCCCACAATGCCACCACGACTAGCGTGGTACCCCCCCCCCTACC
CCTTATGTACGTTTGCTGACAAAATTCATAACCCCTCCCTGAATCCCTAC
CGCTGCTGTTTCTCGTAACTTGGGGACACGATTCGCTGCCTCCCTTTTTC
GCGCAACTATTATAACTTGGTTGCAACGTGTGGTTTGGCCGTCTGATGGC
ATGTTTTTTTGCCGTCTGAACCAGCTGTGGGGCAAGCTGGAGACTCTCGG
TCTCGGAACGGCCCTGAAGATCATGCTCTTCTCGTCTGACGTGGAGGGAA
AGCAAGACCTCAAGTCTCTCAGCAGGAACGAGCTGATCGCCCTGGTGAAC
ACGGCGGCGCAACTGGCCAAGAGCGTCGGAAGCGTCCCGGGGTGGAGATG
GTTGGGTGAGACATGGGTGGGGGGGGGGGGGGGGGGGGGGAATGAGACAG
AGACAGAGACACATAGACAGACAGACAGGCAGAGAGGGCAAGAGGGCGAG
AGACAGAGACAGAGGCATATGGAGAGATATGGGTGGGGAGAAGAGATAGG
AGCACGCAGAAGGAAAGAGGGAGAGAGAGAGCAGGGCAGGTGCACGAGAG
AGTGAGGCGCTGCTTCTACCGCTATGTGACGCAATTGCAATTAGCCCCAT
GCGCAGTAGCGGAACGCTATCGTTGGTCACTGTTTTCATTAGATGAGACT
TTTCTGGCCAGATGTGAGAAAAGAGAGCAGGGTAGAGCAGAGCAGGAAAG
AAGAGCTATAGCTACTGCTTTCTGTTTCTTACAGACCCGAAGGTTTGTTT
TTTTCGCTGAGTGGTATGCACAACAACGTGCGAAAATCTCAAAAGTTTTT
TCCGTTGTTCCCCGCTTTCTTTTCGTTGGCGCCCGCGGGGGGTGGGGGCC
CGTGGAATGCAGAGGTGAAGCAAAAGGGTGCCCAGGTGGGGAAAAGAGCG
GCGCTCGCCGCGATACTCGCGCTGGCGGCGCTGGGCGGCGGCTCCTACCT
GCTCCGCAAGCGTGCCGTCGCTGGTGACGGCGAGAGCAGCAGCAGCGGAG
GGGGGGGAGGAGGGACAGGGACAGGTAATTGCACCACCGTCTTGAGACAG
GCGACCAGCCCCTGGTTGTTGTTTTGGTTGTTGTTTACTCCTGGCAGATT
TTTTTTTTGTTCTTCTTGCTGGAGAATAAACGCCAACTTTGTTGCGCGCG
TACGAGGAAACAACGTCGACGACGTTAGCGCAGAGCGCGCTACTGGATTA
GATGGCGCTTGGGGTATGAATGAAGACACATGAAAGCCACCTCTTGGACT
CCTTCAACTTGCTGCACAGAACATTGACGCGTCACCACTGTTTGCACGCA
ATCTTTCCCGCTGGGTGAAGAGTTGCATCGCAACCCTGATGAATTTATAA
TTTTTGCGGTGGGAAGCAAATAGGCGCGTGTGTTGCGCCACGGTGAACCG
CGGGCATATGTTGATTTTTTTCTTGATGACTTTTGGTTTCGTTTTTCTCA
ATAGCGTGCGTACCAGCCTATTTTTTTAGTACCTCCCCCGTCATCGCACC
ACGCGTCCTCGTCTTTGCGTCGTAATGCTATTTGGCGGTGCGTATGCTAA
CTTGAGCGTTATCTATCACCGCGGCACAGGCTGGTGTCCTTGTTTTTTCA
AGCGTCTTACACTCCGCGTCGCCCCCGCCCCCCCGCATGTTTCTTCAGGG
ACGACGACGCCTTCGAAGGCAAACGGCACCGGAAACGGTTCGGGGAGCGA
TTCCGGGATGCGAAGACGGCAGAAGAAGGCGCCCGTCTCTGGTCATGAAG
ATTGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8717:129..4533+

>mRNA_Ecto-sp9_F_contig8717.16899.1 ID=mRNA_Ecto-sp9_F_contig8717.16899.1|Name=mRNA_Ecto-sp9_F_contig8717.16899.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1362bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8717:129..4533+ (Ectocarpus species9 EcSCA_722f female)
ATGTTCGTGAACGCCGTGGGCATGCACCCTGACCGGCTGACCAACATGTA
CTTCACCTACGTGTTCGTGCTCAGGGCGATTGGAAAGGCGCGACCGTTCC
TCATGATGTTCGTGAACGCCGTGGGCATGCACCCTGACCGGCTGACCAAC
ATGTACTTCACCTACGTGTTCGTGCTCAGGGCGATTGGAAAGGCGCGACC
GTTCCTCATGGCGTACGAGTACGACACCGGAAACGACGAGGATGACAAGA
TGACCCGTCAGCTAATCAACGAGCTGGCGTACGAGTACGACACCGGAAAC
GACGAGGATGACAAGATGACCCGTCAGCTAATCAACGAGCTGGTGAGCGC
CGAGCAGGAGAAGGAGGCCGGCATGGTTAGCGTGGACAACGACATACGGC
GCGACGACTCGGTTCCGATGTGCCTCAGGGGCTTCGACGAGAAGGGGCTG
TTCGGCGACGCGAGCGGAGACGCGGTATTCGAGGCTGGCCAGGTGAGCGC
CGAGCAGGAGAAGGAGGCCGGCATGGTTAGCGTGGACAACGACATACGGC
GCGACGACTCGGTTCCGATGTGCCTCAGGGGCTTCGACGAGAAGGGGCTG
TTCGGCGACGCGAGCGGAGACGCGGTATTCGAGGCTGGCCAGGAGGACGG
TTCTATGGCCCTCAAGCAAGAGTTCATGCACAAGTTCCACAACATCTCAC
GCATCATGGACTGCGTCGGCTGCGAGAAGTGCAAGGAGGACGGTTCTATG
GCCCTCAAGCAAGAGTTCATGCACAAGTTCCACAACATCTCACGCATCAT
GGACTGCGTCGGCTGCGAGAAGTGCAAGGTGAAGCAAAAGGGTGCCCAGG
TGGGGAAAAGAGCGGCGCTCGCCGCGATACTCGCGCTGGCGGCGCTGGGC
GGCGGCTCCTACCTGCTCCGCAAGCGTGCCGTCGCTGGTGACGGCGAGAG
CAGCAGCAGCGGAGGGGGGGGAGGAGGGACAGGGACAGGTGAAGCAAAAG
GGTGCCCAGGTGGGGAAAAGAGCGGCGCTCGCCGCGATACTCGCGCTGGC
GGCGCTGGGCGGCGGCTCCTACCTGCTCCGCAAGCGTGCCGTCGCTGGTG
ACGGCGAGAGCAGCAGCAGCGGAGGGGGGGGAGGAGGGACAGGGACAGGG
ACGACGACGCCTTCGAAGGCAAACGGCACCGGAAACGGTTCGGGGAGCGA
TTCCGGGATGCGAAGACGGCAGAAGAAGGCGCCCGTCTCTGGTCATGAAG
ATTGAGGACGACGACGCCTTCGAAGGCAAACGGCACCGGAAACGGTTCGG
GGAGCGATTCCGGGATGCGAAGACGGCAGAAGAAGGCGCCCGTCTCTGGT
CATGAAGATTGA
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