mRNA_Ecto-sp9_F_contig8714.16896.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig8714.16896.1
Unique NamemRNA_Ecto-sp9_F_contig8714.16896.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig8714.16896.1 vs.
Match: Vacuolar (protein sorting-associated protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP20_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 2.030e-10
Identity = 33/34 (97.06%), Postives = 33/34 (97.06%), Query Frame = 2 
Query:    2 ARFSFSMQDLDLEDRLQESSKKRRVKTARSFVPD 103
            ARFSFSMQDLDLEDRLQESSKKRRVKT RSFVPD
Sbjct: 1735 ARFSFSMQDLDLEDRLQESSKKRRVKTERSFVPD 1768
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BLAST of mRNA_Ecto-sp9_F_contig8714.16896.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKL9_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 3.360e-9
Identity = 31/34 (91.18%), Postives = 31/34 (91.18%), Query Frame = 2 
Query:    2 ARFSFSMQDLDLEDRLQESSKKRRVKTARSFVPD 103
            ARFSFSMQDLDLEDRLQESSKK R K ARSFVPD
Sbjct:  404 ARFSFSMQDLDLEDRLQESSKKHRTKAARSFVPD 437
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8714.16896.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Vacuolar2.030e-1097.06protein sorting-associated protein, putative n=1 T... [more]
Uncharacterized3.360e-991.18protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8714contigEcto-sp9_F_contig8714:4581..5305 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size249
Cds size228
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8714.16896.1prot_Ecto-sp9_F_contig8714.16896.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig8714 4600..5305 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930917.0444002-UTR-Ecto-sp9_F_contig8714:4580..45991622930917.0444002-UTR-Ecto-sp9_F_contig8714:4580..4599Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8714 4581..4599 +
1692278947.9176958-UTR-Ecto-sp9_F_contig8714:4580..45991692278947.9176958-UTR-Ecto-sp9_F_contig8714:4580..4599Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8714 4581..4599 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930917.0645528-CDS-Ecto-sp9_F_contig8714:4599..46201622930917.0645528-CDS-Ecto-sp9_F_contig8714:4599..4620Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8714 4600..4620 +
1692278947.9460316-CDS-Ecto-sp9_F_contig8714:4599..46201692278947.9460316-CDS-Ecto-sp9_F_contig8714:4599..4620Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8714 4600..4620 +
1622930917.0820756-CDS-Ecto-sp9_F_contig8714:5098..53051622930917.0820756-CDS-Ecto-sp9_F_contig8714:5098..5305Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8714 5099..5305 +
1692278947.9871826-CDS-Ecto-sp9_F_contig8714:5098..53051692278947.9871826-CDS-Ecto-sp9_F_contig8714:5098..5305Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8714 5099..5305 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig8714.16896.1

>prot_Ecto-sp9_F_contig8714.16896.1 ID=prot_Ecto-sp9_F_contig8714.16896.1|Name=mRNA_Ecto-sp9_F_contig8714.16896.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=76bp
MQDLDLEDRLQESSKKRRVKTARSFVPDDGAAAVVVVGEEEGEEPKAMEE
EGVPSPPDSLPPTRDGGGSGGDEDGE
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mRNA from alignment at Ecto-sp9_F_contig8714:4581..5305+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig8714.16896.1 ID=mRNA_Ecto-sp9_F_contig8714.16896.1|Name=mRNA_Ecto-sp9_F_contig8714.16896.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=725bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8714:4581..5305+ (Ectocarpus species9 EcSCA_722f female)
CGCAAGATTCTCGTTCTCGATGCAGGATTTGGACCTTGAGGTACGGTGTT
GTTGTTGATGTCTATAGAAGCCGAAATCACACCATTAAGACTACTGTAGT
CATCGGTTTCGTTACGGTTTCCGAGCGCGCGACGTGTCTAGTGGTACGAC
AACCGTTCAGAGAAACGGGGGACGCGAGCAACTATCTCGGCTCGCCAGGG
GGTGAACGGACGGCGACTAACCGCAGTGTACGACTACCTGAAGTATTTTA
CCATGCCTAGGTACCATGGAGCCAAACCACACGCCTTCAGGTATCTAGAG
GTAGCGATAAGATATTTTTCACAGTGGTCTGCAACGCCGGTTCGGCGCAA
GTGCACGGCGGCGCATCGGGTTAAAACGTAAGTGCATGATCCGATCCGAG
CCGCGATTGTTTCGGCACGTAGAAAGATAATCCTCCCGTCCGCCTCCCAC
CCCTTTGCGGCGTGCGTGCCTGCCTGCCTGCCTGCCGTCCTTCCCCCCCG
CCACACACCGCCGTGCAGGACCGCTTGCAAGAGTCCTCGAAGAAGCGTCG
AGTGAAGACCGCGCGGAGTTTTGTACCGGACGACGGCGCCGCCGCCGTGG
TGGTGGTAGGCGAAGAAGAAGGCGAGGAGCCGAAGGCTATGGAGGAGGAG
GGCGTGCCCTCGCCGCCGGACTCGCTACCGCCGACGCGGGACGGCGGTGG
CAGCGGTGGCGACGAAGACGGTGAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8714:4581..5305+

>mRNA_Ecto-sp9_F_contig8714.16896.1 ID=mRNA_Ecto-sp9_F_contig8714.16896.1|Name=mRNA_Ecto-sp9_F_contig8714.16896.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=456bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8714:4581..5305+ (Ectocarpus species9 EcSCA_722f female)
ATGCAGGATTTGGACCTTGAGATGCAGGATTTGGACCTTGAGGACCGCTT
GCAAGAGTCCTCGAAGAAGCGTCGAGTGAAGACCGCGCGGAGTTTTGTAC
CGGACGACGGCGCCGCCGCCGTGGTGGTGGTAGGCGAAGAAGAAGGCGAG
GAGCCGAAGGCTATGGAGGAGGAGGGCGTGCCCTCGCCGCCGGACTCGCT
ACCGCCGACGCGGGACGGCGGTGGCAGCGGTGGCGACGAAGACGGTGAGG
ACCGCTTGCAAGAGTCCTCGAAGAAGCGTCGAGTGAAGACCGCGCGGAGT
TTTGTACCGGACGACGGCGCCGCCGCCGTGGTGGTGGTAGGCGAAGAAGA
AGGCGAGGAGCCGAAGGCTATGGAGGAGGAGGGCGTGCCCTCGCCGCCGG
ACTCGCTACCGCCGACGCGGGACGGCGGTGGCAGCGGTGGCGACGAAGAC
GGTGAG
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