mRNA_Ecto-sp9_F_contig8712.16895.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig8712.16895.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2P7_ECTSI) HSP 1 Score: 660 bits (1703), Expect = 2.130e-235 Identity = 385/425 (90.59%), Postives = 390/425 (91.76%), Query Frame = 1
Query: 1 PLYGVMAVLLVVLLLASAGVSSFADPSAEGAEVVTSSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDLSGMWDKSSMVAPPFDCTCG-------TLKASYFCPNLGTGGYPKWNTSGACERRERSALQNEPLPPGFRVLFYGNSHLRQVVEGIVCAYSSSIRSRCLRVVVDGEGLTQEDTLVDEGLQCRSCVNSHKLRRALLEHECISEDAKEEACRCDDDESVFEFDNGAAIHYHFAHKEENKRFEDALKYRGTEYSSYGAVVGNLGNDPRMEVSEVLRVANLLKEEGVPLFWTSAYEGEGDVGAWLPEEQALFWDSGARFVPVHRMVESLKYLTKGVVEGEHNPHFCMPGPPNEIGILLLEMAWAVHAERGGAARGGEEVPRIEVAGNDGSGNE 1254
PLYGVMAV LVVLLLASA VSSFADPSAEGAEVVT SL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX DDLSGMWDKSSMVAPPFDCTC L ASYFCPNLGTGGYPKW+TSG CERRERSALQNEPLPPGFRVLFYGNSHLRQVVEGIVCAYSSSIRSRCLRVVVDGE L QEDTLVDE LQCRSCV S KLRR LLEHECISEDAKEEACRCDDDESVFEFDNGAAIHYHFAHKEENKRFEDAL+YRGTEYSSY AVVGNLGNDPRMEVSEVLRVANLLKEEGVPLFWTSAYEGEGDVGAWLPEEQALFWDSGARFVPVHRMV+SLKYLTKGVVEGE+NPHFCMPGPPNEIGILLLEMAWAV+AERGGAARGGEEVPRIEV GNDGSG E
Sbjct: 19 PLYGVMAVSLVVLLLASAVVSSFADPSAEGAEVVTLSLSTPPQESESLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--DDLSGMWDKSSMVAPPFDCTCSGSGRAGRALNASYFCPNLGTGGYPKWSTSGGCERRERSALQNEPLPPGFRVLFYGNSHLRQVVEGIVCAYSSSIRSRCLRVVVDGESLAQEDTLVDEDLQCRSCVYSRKLRRTLLEHECISEDAKEEACRCDDDESVFEFDNGAAIHYHFAHKEENKRFEDALQYRGTEYSSYDAVVGNLGNDPRMEVSEVLRVANLLKEEGVPLFWTSAYEGEGDVGAWLPEEQALFWDSGARFVPVHRMVKSLKYLTKGVVEGENNPHFCMPGPPNEIGILLLEMAWAVYAERGGAARGGEEVPRIEVEGNDGSGKE 441
BLAST of mRNA_Ecto-sp9_F_contig8712.16895.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUF6_9PHAE) HSP 1 Score: 643 bits (1659), Expect = 6.380e-228 Identity = 357/419 (85.20%), Postives = 367/419 (87.59%), Query Frame = 1
Query: 1 PLYGVMAVLLVVLLLASAGVSSFADPSAEGAEVVTSSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD-DLSGMWDKSSMVAPPFDCTCGTLKASYFCPNLGTGGYPKWNTSGACERRERSALQNEPLPPGFRVLFYGNSHLRQVVEGIVCAYSSSIRSRCLRVVVDGEGLTQEDTLVDEGLQCRSCVNSHKLRRALLEHECISEDAKEEACRCDDDESVFEFDNGAAIHYHFAHKEENKRFEDALKYRGTEYSSYGAVVGNLGNDPRMEVSEVLRVANLLKEEGVPLFWTSAYEGEGDVGAWLPEEQALFWDSGARFVPVHRMVESLKYLTKGVVEGEHNPHFCMPGPPNEIGILLLEMAWAVHAERGGAARGGEEVPRIEVAGNDGSGNE 1254
PLYGVMA LL++LLLASAGVS FADPSAEGA+VVT S+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXX DLSGMWDKSSMVAPPFDCTC TLKASYFCPNLGTGGYPKWNTSGACERRERSALQNEPLPP FRVLFYGNSHLRQVVEGIVCAYS+SIRSRCLRVVV G L ED LVDE LQCR CVNSHK R LLEHECISE+AK+EAC CDD+ESVFEFDNGAAIHYHFAHKEENKRFEDALKYRGTEYS Y VVGNLGNDPRMEVSEVLRVANLLKEEGV LFWTSAYEGEGDVGAWLPEEQALFWDSGARFVPVHRMVESLKYLTKGVVEGE+NPHFCMPGPPNEIGILLLEMAWAV+AERG AARGGEEVPRIEVAGNDGSG E
Sbjct: 19 PLYGVMAALLLLLLLASAGVSGFADPSAEGAKVVTLSVSTPQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRACTVDDLVPPHGNYEDGGGDGGYDLSGMWDKSSMVAPPFDCTCRTLKASYFCPNLGTGGYPKWNTSGACERRERSALQNEPLPPAFRVLFYGNSHLRQVVEGIVCAYSTSIRSRCLRVVVGGGSLAPEDALVDEDLQCRGCVNSHKQRNMLLEHECISEEAKKEACSCDDNESVFEFDNGAAIHYHFAHKEENKRFEDALKYRGTEYSFYDVVVGNLGNDPRMEVSEVLRVANLLKEEGVTLFWTSAYEGEGDVGAWLPEEQALFWDSGARFVPVHRMVESLKYLTKGVVEGENNPHFCMPGPPNEIGILLLEMAWAVYAERGDAARGGEEVPRIEVAGNDGSGKE 437
BLAST of mRNA_Ecto-sp9_F_contig8712.16895.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAG2_9PHAE) HSP 1 Score: 216 bits (549), Expect = 1.760e-61 Identity = 125/314 (39.81%), Postives = 167/314 (53.18%), Query Frame = 1
Query: 289 LSGMWDKSS--MVAPPFDCTCGTLKASYFCPNLGTGGYPKWN----TSGACER--RERSALQNEPLPPGFRVLFYGNSHLRQVVEGIVCAYSSSIRSRCLRVVVDGEGLTQEDTLVDEGLQCRSCVNSHKLRRALLEHECISEDAKEEACRCDDDESVFEF----DNGAAIHYHFAHKEENKRFEDALK-YRGTEYSSYGAVVGNLGNDPRMEVSEVLRVANLLKEEGVPLFWTSAYEGEGDVGAWLPEEQAL-FWDSGARFVPVHRMVESLKYLTKGVVEG--EHNPHFCMPGPPNEIGILLLEMAWAVHAER 1182
LS W + + PP+ C C KA YFCPNLG+G YP+W T G C RE + + P PP +VLFYGNSH+RQ +E I+C + + S+ LR V V CR+C + LL CI NGA +H++FA+ +E+KR DAL + + S Y AV N GN P +E VL A L+ GVP FW S YEG+GD W ++ FW+SGA+FV V +V+ L LT+ VVE E++PHFCMPGPP+E+GILLL++ WA+H E+
Sbjct: 138 LSSEWSQGQGGVWKPPYGCDCAFSKARYFCPNLGSGVYPRWVPRAVTRGDCRSATREEMSSRGAPFPPDSKVLFYGNSHMRQTLEAILCLFQKDVVSKRLRFVSATNANETAYLEVPGDTPCRACSVWTFFKDTLLNSGCIGXXXXXXXXXXXXXXXXXXXXXXXSNGAVVHFYFANHDEDKRITDALAPHHKEDLSYYTAVFANPGNKPSVEADAVLDAAVELQAAGVPFFWLSTYEGKGDPQRWNSRQRETDFWESGAKFVRVFDIVQGLHSLTRKVVERTVENDPHFCMPGPPDEVGILLLKLLWALHHEK 451
BLAST of mRNA_Ecto-sp9_F_contig8712.16895.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5J2_9PHAE) HSP 1 Score: 182 bits (463), Expect = 1.220e-51 Identity = 95/224 (42.41%), Postives = 129/224 (57.59%), Query Frame = 1
Query: 526 VCAYSSSIRSRCLRVVVDGEGLTQEDTLVDEGLQCRSCVNSHKLRRALLEHECISEDAKEEACRCDDDESVFEFDNGAAIHYHFAHKEENKRFEDALKYRGT-EYSSYGAVVGNLGNDPRMEVSEVLRVANLLKEEGVPLFWTSAYEGEGDVGAWLPEEQALFWDSGARFVPVHRMVESLKYLTKGVVEGEHNPHFCMPGPPNEIGILLLEMAWAVHAERGGAA 1194
+C Y + + ++ G G+ D + QCR+C L++ + + C+ +D +++ACRCDDD + F F NGA +HY+FA + NK +DAL G S Y AVV N GN P M V V A L+ VP W S Y G G V W +Q F SGARFV V M+ L TKG VEG ++PHFC+PGPP+E+G+LLL++ WA+H ERG AA
Sbjct: 1 MCIYWNKVVAKRATYQQPGNGV---DRWIHGNAQCRACTG---LQQQQVNYGCLDQDVRDDACRCDDDHAEFLFQNGAVVHYYFASTDPNKSIKDALLPHGNVSLSYYDAVVANNGNGPEMAVDVVCEAALELQALSVPFLWLSTYVGRGSVDLWNDAQQEQFTQSGARFVNVGHMMFGLSNFTKGAVEGGNDPHFCLPGPPDELGLLLLKIIWAIHQERGAAA 218
BLAST of mRNA_Ecto-sp9_F_contig8712.16895.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBA5_9PHAE) HSP 1 Score: 167 bits (423), Expect = 9.630e-46 Identity = 87/224 (38.84%), Postives = 128/224 (57.14%), Query Frame = 1
Query: 526 VCAYSSSIRSRCLRVVVDGEGLTQEDTLVDEGLQCRSCVNSHKLRRALLEHECISEDAKEEACRCDDDESVFEFDNGAAIHYHFAHKEENKRFEDALKYRGT-EYSSYGAVVGNLGNDPRMEVSEVLRVANLLKEEGVPLFWTSAYEGEGDVGAWLPEEQALFWDSGARFVPVHRMVESLKYLTKGVVEGEHNPHFCMPGPPNEIGILLLEMAWAVHAERGGAA 1194
+C + + + ++ + G G+ D + QCR+C + + +++ C+ +D +++ACRCDDD + + F NGA +HY+FA + K +DAL G S Y AV N GN P+M V +V A L+ VP W S Y+G G V W ++ F SGARFV V M+ L TKG VE +PHFC+PGPP+E+G LLL++ WA++ ERG AA
Sbjct: 1 MCIHWNKVVAKRVTYQQPGNGV---DRWIHGNAQCRACTGFDQQQ---VDYGCLDQDVRDDACRCDDDHAEYLFQNGAVVHYYFAGTDPKKSIKDALLPHGNVSLSHYDAVFANDGNWPKMAVDDVCEAAFELQALSVPFLWLSTYDGHGSVDLWNDAQKEKFSQSGARFVNVGHMLFGLSNFTKGAVEDRVDPHFCLPGPPDELGFLLLKIIWALYQERGAAA 218
BLAST of mRNA_Ecto-sp9_F_contig8712.16895.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G974_ECTSI) HSP 1 Score: 156 bits (395), Expect = 5.170e-42 Identity = 83/166 (50.00%), Postives = 107/166 (64.46%), Query Frame = 1
Query: 706 EACRCDDDESVFEFDNGAAIHYHFAHKEENKRFEDALKYRGTE-YSSYGAVVGNLGNDPRMEVSEVLRVANLLKEEGVPLFWTSAYEGEGDVGAW-LPEEQALFWDSGARFVPVHRMVESLKYLTKGVVEG--EHNPHFCMPGPPNEIGILLLEMAWAVHAERGGA 1191
E RCDDD F F NGA +H++FA+++E+KR DAL E +S Y AV N GN P +E VL A L+ GVP FW S YEG+GD W P+ + F SGA+FV V MV+ L LT+ VVE E +PHFCMPGPP+E+GILLL++ WA+H E+ G+
Sbjct: 23 ETLRCDDDHGEFFFSNGAVVHFYFANRDEDKRITDALAPHDKEDFSYYTAVFANPGNKPSVEADAVLDAAFELQAAGVPFFWLSTYEGKGDPQRWNSPQRETDFPGSGAKFVRVVDMVQGLHRLTRKVVERTVEDDPHFCMPGPPDEVGILLLKLLWALHHEKNGS 188
BLAST of mRNA_Ecto-sp9_F_contig8712.16895.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z986_9STRA) HSP 1 Score: 112 bits (279), Expect = 1.640e-23 Identity = 98/324 (30.25%), Postives = 131/324 (40.43%), Query Frame = 1
Query: 295 GMWD-KSSMVAPPFDCTCGTLKASYFCPNLGTGGYPKWNTSGACERRERSALQNEPL-PPGFRVLFYGNSHLRQVVEGIVCAYSSSIRSRCLRVVVDGEGLTQEDTLVDEGLQCRSCVNSHKLRRALLEHECISEDAKEEACRCDDDESVFEFDNGAAIHYHFAHKEENKRFEDALKYR-GTEYSSYGAVVGNLGNDPRMEVSEV------LRVANLLKEEGVPLFWTSAYEGEGDVGAWLPEEQALFWDSGARFVPVHRMVESLKYLTKGVVEG--------EHNPHFCMPGPPNEIGILLLE----MAWAVHAERGGAARGG 1203
G W+ +++ P +DC+C KA Y C P W A + E AL + PL PPG RVLF GNSH+RQ+VE +CA+ + R + V L D + CR H L E + C DD + F NGA + Y F H+E NK + + GT Y VV N GN P M +S L ++K VPL+W S E L A + L+ LT GV + HFCMP P ++I L + W + ERGG+A G
Sbjct: 57 GSWEQRTAHQEPLYDCSCPLAKARYHCHEFNAVDGPVW-VPRALVKGECRALPHNPLVPPGARVLFAGNSHMRQLVESGLCAHRHEVARRNVSAGV----------LEDISIPCRGFRLKHYLDGCPYEPSVLG--VAPGQLECSDDRATFTLSNGATVSYVFMHREVNKTIDQFIGPTFGTSLRDYDIVVANAGNAPDMLLSSFADEVGPLVTQGIIKALWVPLYWGSDALDEFRDARTLNNGNLPTASQRAALDAITFF--DLRILTSGVASFTVAKRAHLSRDGHFCMPSPVDDISDTLFAHVRYLWWHLALERGGSALDG 365 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8712.16895.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig8712.16895.1 >prot_Ecto-sp9_F_contig8712.16895.1 ID=prot_Ecto-sp9_F_contig8712.16895.1|Name=mRNA_Ecto-sp9_F_contig8712.16895.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=445bp MAVLLVVLLLASAGVSSFADPSAEGAEVVTSSLSTPPQESESLSSGGAGEback to top mRNA from alignment at Ecto-sp9_F_contig8712:1284..5732- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig8712.16895.1 ID=mRNA_Ecto-sp9_F_contig8712.16895.1|Name=mRNA_Ecto-sp9_F_contig8712.16895.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=4449bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8712:1284..5732- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8712:1284..5732- >mRNA_Ecto-sp9_F_contig8712.16895.1 ID=mRNA_Ecto-sp9_F_contig8712.16895.1|Name=mRNA_Ecto-sp9_F_contig8712.16895.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2670bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8712:1284..5732- (Ectocarpus species9 EcSCA_722f female)back to top |