mRNA_Ecto-sp9_F_contig871.16894.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig871.16894.1
Unique NamemRNA_Ecto-sp9_F_contig871.16894.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig871.16894.1 vs.
Match: ATP-dependent (DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCP0_9PHAE)

HSP 1 Score: 217 bits (552), Expect = 1.150e-59
Identity = 175/342 (51.17%), Postives = 188/342 (54.97%), Query Frame = 1 
Query:    4 DDSGWDAKRYYRLAGEEDGGGSDDSGQH-------------EMEGSSNGELDDAGFDARAPPAAGGGKRLPKKEVSMAAFGNEEDYWDRLERLEAESEGKTPPNSKVKPXXXXRSKAPPSSATSRASPPPLRKHFGKNLPRSALPAPPREFVAGDSQVSRQERQEQQRRRLKVRSVHQPVLPVSKRPRTTXXXXXXXXXXXXXXXTARPSTLDTNSTAVAGRSLAVVAVEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLPKRRGGEGSEAVADLLTQVFSSPTGGAGRNSSGGGSVKHPANTQGVTAGSRTSLRGSDPVALFSSSG 990
            DDSGWDAKRYYRLAG+EDGG SDDSGQ              EM+GSSNGELDDAG      P +                                     PP+          S    ++ T  +   P RK     + R        E V GDSQV RQERQEQQRRRLKVRSVHQPVLP++KRPRTT               T  P  LDT STAVAGRSLAVV+VEA     XXXXXXXXXXXXX                        SLPKRRG EGS AVADLL QVFSSPTGGAGRNS GGG VK PA TQG TAGSR+SLRGSDPVALFSS+G
Sbjct:  402 DDSGWDAKRYYRLAGQEDGGSSDDSGQARIGRCASIYLLIVEMQGSSNGELDDAGHAKHEYPPS-------------------------------------PPSETRNQCPWPLSATKRTTGTGWSGSRPRRKEKRLQIQR--------EVVVGDSQVPRQERQEQQRRRLKVRSVHQPVLPLNKRPRTTGSRCSNNSSSK----TVHPFRLDTYSTAVAGRSLAVVSVEARRKQPXXXXXXXXXXXXXGPAVEQNGRRAGDSATATAAAQSASLPKRRGDEGSGAVADLLAQVFSSPTGGAGRNSRGGGFVKQPAITQGATAGSRSSLRGSDPVALFSSNG 694
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BLAST of mRNA_Ecto-sp9_F_contig871.16894.1 vs.
Match: ATP-dependent (DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXK3_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 4.530e-8
Identity = 30/32 (93.75%), Postives = 31/32 (96.88%), Query Frame = 2 
Query:  185 KCPWPLSATKRTTGTGWSGSRPSRKEKRLQTP 280
            +CPWPLSATKRTTGTGWSGSRP RKEKRLQTP
Sbjct:  588 QCPWPLSATKRTTGTGWSGSRPRRKEKRLQTP 619
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig871.16894.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
ATP-dependent1.150e-5951.17DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
ATP-dependent4.530e-893.75DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig871contigEcto-sp9_F_contig871:10301..13575 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1146
Cds size1146
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig871.16894.1prot_Ecto-sp9_F_contig871.16894.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig871 10301..13575 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930916.6326106-CDS-Ecto-sp9_F_contig871:10300..103841622930916.6326106-CDS-Ecto-sp9_F_contig871:10300..10384Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig871 10301..10384 +
1692278947.6919732-CDS-Ecto-sp9_F_contig871:10300..103841692278947.6919732-CDS-Ecto-sp9_F_contig871:10300..10384Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig871 10301..10384 +
1622930916.6504707-CDS-Ecto-sp9_F_contig871:11615..117181622930916.6504707-CDS-Ecto-sp9_F_contig871:11615..11718Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig871 11616..11718 +
1692278947.7059734-CDS-Ecto-sp9_F_contig871:11615..117181692278947.7059734-CDS-Ecto-sp9_F_contig871:11615..11718Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig871 11616..11718 +
1622930916.6672661-CDS-Ecto-sp9_F_contig871:12616..135751622930916.6672661-CDS-Ecto-sp9_F_contig871:12616..13575Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig871 12617..13575 +
1692278947.7191737-CDS-Ecto-sp9_F_contig871:12616..135751692278947.7191737-CDS-Ecto-sp9_F_contig871:12616..13575Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig871 12617..13575 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig871.16894.1

>prot_Ecto-sp9_F_contig871.16894.1 ID=prot_Ecto-sp9_F_contig871.16894.1|Name=mRNA_Ecto-sp9_F_contig871.16894.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=382bp
QDDSGWDAKRYYRLAGEEDGGGSDDSGQHEMEGSSNGELDDAGFDARAPP
AAGGGKRLPKKEVSMAAFGNEEDYWDRLERLEAESEGKTPPNSKVKPKPK
PRSKAPPSSATSRASPPPLRKHFGKNLPRSALPAPPREFVAGDSQVSRQE
RQEQQRRRLKVRSVHQPVLPVSKRPRTTSSSSSSSSSNNSSSKTARPSTL
DTNSTAVAGRSLAVVAVEARRKQPQQQQPTAARHQQQGPAVEQNGRRAGD
SAAATAAAQSASLPKRRGGEGSEAVADLLTQVFSSPTGGAGRNSSGGGSV
KHPANTQGVTAGSRTSLRGSDPVALFSSSGSSGGRGVARTSSEAAKRPAS
VAQKPPAARRSGAGGSGGGGAVADLFAQMFSG
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mRNA from alignment at Ecto-sp9_F_contig871:10301..13575+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig871.16894.1 ID=mRNA_Ecto-sp9_F_contig871.16894.1|Name=mRNA_Ecto-sp9_F_contig871.16894.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3275bp|location=Sequence derived from alignment at Ecto-sp9_F_contig871:10301..13575+ (Ectocarpus species9 EcSCA_722f female)
CAAGACGATAGCGGGTGGGACGCTAAGAGGTACTATCGGTTGGCAGGGGA
GGAAGACGGCGGCGGCAGCGACGACTCGGGCCAGGTATGTGTCGGTCGGT
GTGCGTCTTTTTCTTCTGATTGTTGTTGTTGTTGTTGTTGTTGTTGTTGT
TGTTGTTGTTGTTGTTGTTGTTGTTGTTGCTGTTGTTGCTGTTGCTGTTG
TTGCTGTTGCTGTTGTTGTTGTTGTTGCTGTTGCTGTTGCTGTTTTTGTC
GTCGCCGTCGTTGCGTACACTCACTCAAGCGGCCGGACAGAACCAGGTTG
GAACCCTTTCACTGGCAACTCTTCGAATTCACACCGGCTACTCGCGGGAG
CTGGACGTCTTCCTTCCCCGCCGTCCGCTGACGGTGCCAATCAGACACAA
CCGCTGTCCCTGCATTCGAGCCGAGACATTGAGGCTCATCAAACATTCAA
ACATAAGAGCTTGGCCATATGAACATGTGCTAAGTCACGATCCCTGCGAT
GGAAGTTTCTTATGGTCGATATTGGTTTGGTCGCTCCACAGAGGAGTAGA
AGCCGAAGAACTTGGCCATAACTTGCCCATAAGGTCATGTGTCATGTTAG
GAACCCTGCACTACAAGTTTTATGTGGTCGATGTTGAGTTTTTTGGTCCA
CAGAGGAATGGCAGCCTGAGAAATTGGCCATAAGAACATGTGCTATTTGA
GGACCCCTGAGCTATACACCTATGTATATACGATGTTGTGTTGGTTCCAC
AGAGGAAACAAGATGAGAGCCTGTAAGAGTTTCTTCTTCATGAATGGCGT
GTTATGTGTACAAAGGCGACGGGGCTCACATTCCCAGGGAGACCTTCAGC
TCGGCCATCACGGCGAGTCCGAACTGTTCACCCCGAGACGTTCGAAACAT
TTTGGTACGGGACAACGTGCCCCCCTGAGATTTTTCTGTAGGACATTGTG
TTGGGTTTTGTGTTTTTGACGTGGCCGTGATGGTAGCGGCGGGGCGGCAG
CTTGGTGTGCGGCATTTCCACTCGTGAAGGCCGTGGAGTGCTTGGAGCCA
GTGTCGTTCGCTGGCGTAGCACGCGCCGCGTGGCTGGTGTTAACCGCCAA
AATATTTACATTGTCCATGCGTTTTTTGTCAATGGGTATTGTTCTTTGGG
CACCATAGTGTAGGGCGGCAGCAGTGACCATGAGAGCGTCTCTTTCCCCT
CTCTCCGCTGTTGTGGCGAGCATCGATCGCACTAACCGGCTGACCAAATG
GGTATTAAGTCAGCCTTGCAGGGTGCGATCTTCCCTTACACCACCCACCC
ATTTGTCCACAACAGCATGAAATGGAAGGCTCGAGCAACGGAGAGCTTGA
CGACGCCGGGTTCGACGCACGAGCCCCACCGGCCGCAGGCGGCGGCAAGC
GGCTCCCAAAGAAAGAAGGCAAGCCGCTAGCACGTCGTGTGCTGTTGTCC
ATGTTGCCGCTGCTGCTGCTGCTGCTGCTGCTGCTGTTGTTGTTGATTGT
TCACGTTGTTGTTACCTTTGATTTTTTTTCAGCAGGGCATATGGATGTGC
GTCTTACAACGATGCTGTGATCAAATGAAGGCAACGGCGAACTATAATTT
TGGTCGACAGCGTGCCTGAAGTAAGGAACACCGCGAGCGACGAACAACCC
CGCCGGCCTCTCAACTGCCGGTACCTTTCAACGCATGCGCTCACAGCCCC
AAACGTTACCCACGCACGCTGAAAGAACTGACGCACGTACACATGAAGCC
GTTTGTAGAGCAGTGTTTACGGCTGCAAACTTTTCTCGTTCTTGTGTAGG
AAAAACGTGCCTTGGAGGAACACAACGGAGCTCGACAACCGTAAGGTTAA
CAACCCCGGCGAGGAGGGCGAGGAGTCAGCGGTCTTTGCGAAGCTCTAGA
AAAGACCGGCTTGTTGTGTTGACCTAATCAATAATAGCTTATAAAAAAAA
TGCTTCAGGGGTGCGAAATCCGCTCACGGTTAAACGCATCCACGCGTGCG
CGTGTACGCTTCGCGTTTTTCCCGAACACGCAACAGCCAGCCTCCGTGAC
TGCACCTCATGCACCCACCTCGTTCATTGAACCCCTCCACCTGGGGTATA
AGAAGCGGGCTGAAAAGGCGAGAAGTCATGTCGATAGGACAGATGGGATA
GGGAAAAATGTTTTGAGCCACGTTTGGCATAGTAGCAAGGAACGATTGGC
CATCGGCGATCGGCCCCGTGGGGACAATCCTCCGTCCTCTCGAGGACAAT
GGTCAAACGATAAAGGCACGCAAAACACGAGTACTCCCGCCCCCCCCGTC
GAAAACACGAAACCAGTGTCCATGGCCGCTTTCGGCAACGAAGAGGACTA
CTGGGACAGGCTGGAGCGGCTCGAGGCCGAGTCGGAAGGAAAAACGCCTC
CAAACTCCAAGGTGAAACCGAAGCCGAAACCGAGATCGAAGGCGCCGCCT
TCGTCCGCAACTTCCAGGGCCTCGCCACCACCGCTGAGGAAGCACTTCGG
AAAGAACCTTCCTCGGTCCGCTCTCCCCGCCCCACCCAGGGAGTTCGTTG
CCGGAGACAGCCAGGTGTCTCGCCAGGAGCGACAAGAGCAGCAACGGCGG
CGGCTCAAAGTCCGGAGCGTGCACCAGCCGGTGCTGCCGGTTAGTAAGCG
GCCTCGCACGACCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAACAGCT
CGAGCAAGACGGCGCGTCCGTCTACGTTGGACACGAATTCCACCGCCGTC
GCCGGCCGATCGTTGGCCGTGGTGGCCGTGGAAGCTCGGCGAAAGCAGCC
GCAGCAGCAGCAGCCGACCGCAGCACGGCATCAGCAGCAGGGCCCCGCAG
TTGAACAGAACGGGAGACGAGCGGGAGACTCTGCAGCAGCAACGGCAGCC
GCTCAAAGCGCTTCGCTGCCGAAAAGACGAGGGGGTGAAGGAAGCGAAGC
CGTGGCAGACCTGCTAACGCAGGTGTTCAGCAGCCCCACCGGCGGTGCCG
GGCGCAACAGCAGCGGCGGCGGCTCCGTCAAACATCCGGCAAACACCCAA
GGTGTGACTGCCGGGTCTCGAACCTCCCTCCGCGGCTCTGACCCGGTCGC
GTTGTTTTCAAGCAGCGGTAGTAGTGGCGGTCGTGGCGTGGCGAGGACAT
CATCGGAGGCAGCCAAACGGCCGGCGAGTGTTGCGCAAAAGCCTCCGGCA
GCAAGAAGGAGCGGGGCCGGTGGAAGTGGGGGAGGGGGTGCGGTCGCCGA
CCTCTTCGCCCAGATGTTCTCCGGC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig871:10301..13575+

>mRNA_Ecto-sp9_F_contig871.16894.1 ID=mRNA_Ecto-sp9_F_contig871.16894.1|Name=mRNA_Ecto-sp9_F_contig871.16894.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2292bp|location=Sequence derived from alignment at Ecto-sp9_F_contig871:10301..13575+ (Ectocarpus species9 EcSCA_722f female)
CAAGACGATAGCGGGTGGGACGCTAAGAGGTACTATCGGTTGGCAGGGGA
GGAAGACGGCGGCGGCAGCGACGACTCGGGCCAGCAAGACGATAGCGGGT
GGGACGCTAAGAGGTACTATCGGTTGGCAGGGGAGGAAGACGGCGGCGGC
AGCGACGACTCGGGCCAGCATGAAATGGAAGGCTCGAGCAACGGAGAGCT
TGACGACGCCGGGTTCGACGCACGAGCCCCACCGGCCGCAGGCGGCGGCA
AGCGGCTCCCAAAGAAAGAAGCATGAAATGGAAGGCTCGAGCAACGGAGA
GCTTGACGACGCCGGGTTCGACGCACGAGCCCCACCGGCCGCAGGCGGCG
GCAAGCGGCTCCCAAAGAAAGAAGTGTCCATGGCCGCTTTCGGCAACGAA
GAGGACTACTGGGACAGGCTGGAGCGGCTCGAGGCCGAGTCGGAAGGAAA
AACGCCTCCAAACTCCAAGGTGAAACCGAAGCCGAAACCGAGATCGAAGG
CGCCGCCTTCGTCCGCAACTTCCAGGGCCTCGCCACCACCGCTGAGGAAG
CACTTCGGAAAGAACCTTCCTCGGTCCGCTCTCCCCGCCCCACCCAGGGA
GTTCGTTGCCGGAGACAGCCAGGTGTCTCGCCAGGAGCGACAAGAGCAGC
AACGGCGGCGGCTCAAAGTCCGGAGCGTGCACCAGCCGGTGCTGCCGGTT
AGTAAGCGGCCTCGCACGACCAGCAGCAGCAGCAGCAGCAGCAGCAGCAA
CAACAGCTCGAGCAAGACGGCGCGTCCGTCTACGTTGGACACGAATTCCA
CCGCCGTCGCCGGCCGATCGTTGGCCGTGGTGGCCGTGGAAGCTCGGCGA
AAGCAGCCGCAGCAGCAGCAGCCGACCGCAGCACGGCATCAGCAGCAGGG
CCCCGCAGTTGAACAGAACGGGAGACGAGCGGGAGACTCTGCAGCAGCAA
CGGCAGCCGCTCAAAGCGCTTCGCTGCCGAAAAGACGAGGGGGTGAAGGA
AGCGAAGCCGTGGCAGACCTGCTAACGCAGGTGTTCAGCAGCCCCACCGG
CGGTGCCGGGCGCAACAGCAGCGGCGGCGGCTCCGTCAAACATCCGGCAA
ACACCCAAGGTGTGACTGCCGGGTCTCGAACCTCCCTCCGCGGCTCTGAC
CCGGTCGCGTTGTTTTCAAGCAGCGGTAGTAGTGGCGGTCGTGGCGTGGC
GAGGACATCATCGGAGGCAGCCAAACGGCCGGCGAGTGTTGCGCAAAAGC
CTCCGGCAGCAAGAAGGAGCGGGGCCGGTGGAAGTGGGGGAGGGGGTGCG
GTCGCCGACCTCTTCGCCCAGATGTTCTCCGGCTGTCCATGGCCGCTTTC
GGCAACGAAGAGGACTACTGGGACAGGCTGGAGCGGCTCGAGGCCGAGTC
GGAAGGAAAAACGCCTCCAAACTCCAAGGTGAAACCGAAGCCGAAACCGA
GATCGAAGGCGCCGCCTTCGTCCGCAACTTCCAGGGCCTCGCCACCACCG
CTGAGGAAGCACTTCGGAAAGAACCTTCCTCGGTCCGCTCTCCCCGCCCC
ACCCAGGGAGTTCGTTGCCGGAGACAGCCAGGTGTCTCGCCAGGAGCGAC
AAGAGCAGCAACGGCGGCGGCTCAAAGTCCGGAGCGTGCACCAGCCGGTG
CTGCCGGTTAGTAAGCGGCCTCGCACGACCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAACAACAGCTCGAGCAAGACGGCGCGTCCGTCTACGTTGGACA
CGAATTCCACCGCCGTCGCCGGCCGATCGTTGGCCGTGGTGGCCGTGGAA
GCTCGGCGAAAGCAGCCGCAGCAGCAGCAGCCGACCGCAGCACGGCATCA
GCAGCAGGGCCCCGCAGTTGAACAGAACGGGAGACGAGCGGGAGACTCTG
CAGCAGCAACGGCAGCCGCTCAAAGCGCTTCGCTGCCGAAAAGACGAGGG
GGTGAAGGAAGCGAAGCCGTGGCAGACCTGCTAACGCAGGTGTTCAGCAG
CCCCACCGGCGGTGCCGGGCGCAACAGCAGCGGCGGCGGCTCCGTCAAAC
ATCCGGCAAACACCCAAGGTGTGACTGCCGGGTCTCGAACCTCCCTCCGC
GGCTCTGACCCGGTCGCGTTGTTTTCAAGCAGCGGTAGTAGTGGCGGTCG
TGGCGTGGCGAGGACATCATCGGAGGCAGCCAAACGGCCGGCGAGTGTTG
CGCAAAAGCCTCCGGCAGCAAGAAGGAGCGGGGCCGGTGGAAGTGGGGGA
GGGGGTGCGGTCGCCGACCTCTTCGCCCAGATGTTCTCCGGC
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