mRNA_Ecto-sp9_F_contig871.16893.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig871.16893.1
Unique NamemRNA_Ecto-sp9_F_contig871.16893.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig871.16893.1 vs.
Match: ATP-dependent (DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXK3_ECTSI)

HSP 1 Score: 494 bits (1271), Expect = 3.820e-168
Identity = 253/265 (95.47%), Postives = 257/265 (96.98%), Query Frame = 3 
Query:    3 DAMDGGALEHLVGFLRERRGQSGIVYCHKRDTAEELAKALNRALRKESLLDGRKAFLAMPYHGKMSDHDRTEAQAKFMSGEVDVITGSVAFGMGVDKSDVRFVVHWDLPKSMEGLYQELGRAGRDGSKAVSVVYHSRETVGLLAFLARKPRPLAGKEKGTEAGRKRQQRASLKAVKAVDSVVAYCEKQGCRRKALLAHFGEVTGAPAAAAAAEQKKHGLATASAGSSKSNIVPTDICRGTCDWCGGERERIKTDLLTLAGARAGG 797
            DAMDGGALEHLVGFLRERRGQSGIVYCHKRDTAEELAKALNRALR+ESLLDG KAFLAMPYHGKMSDHDRTEAQAKFMSGEVDVI GSVAFGMGVDKSDVRFVVHWDLPKSMEGLYQELGRAGRDGSKAVSVVYHSRETVGLLAFLARKPRPLAGKEKGTEAGRKR++RASLKAVKAVDSVVAYCEKQGCRRKALLAHFGEV GAPAAAAAA QKK G ATASAGSSKS+ VPTDICRGTCDWCGGERERIKTDLL LAGARAGG
Sbjct:  267 DAMDGGALEHLVGFLRERRGQSGIVYCHKRDTAEELAKALNRALREESLLDGGKAFLAMPYHGKMSDHDRTEAQAKFMSGEVDVIAGSVAFGMGVDKSDVRFVVHWDLPKSMEGLYQELGRAGRDGSKAVSVVYHSRETVGLLAFLARKPRPLAGKEKGTEAGRKRRRRASLKAVKAVDSVVAYCEKQGCRRKALLAHFGEVPGAPAAAAAAGQKKRGPATASAGSSKSSFVPTDICRGTCDWCGGERERIKTDLLKLAGARAGG 531
[Close]
BLAST of mRNA_Ecto-sp9_F_contig871.16893.1 vs.
Match: ATP-dependent (DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCP0_9PHAE)

HSP 1 Score: 484 bits (1247), Expect = 1.500e-163
Identity = 250/267 (93.63%), Postives = 254/267 (95.13%), Query Frame = 3 
Query:    3 DAMDGGALEHLVGFLRERRGQSGIVYCHKRDTAEELAKALNRALRKESLLDGRKAFLAMPYHGKMSDHDRTEAQA--KFMSGEVDVITGSVAFGMGVDKSDVRFVVHWDLPKSMEGLYQELGRAGRDGSKAVSVVYHSRETVGLLAFLARKPRPLAGKEKGTEAGRKRQQRASLKAVKAVDSVVAYCEKQGCRRKALLAHFGEVTGAPAAAAAAEQKKHGLATASAGSSKSNIVPTDICRGTCDWCGGERERIKTDLLTLAGARAGG 797
            DAMDGGALEHLVGFLRER GQSGIVYCHKRDTAEELAKALNRALRKESLLDGRKAFLAMPYHGKMSDHDRTEAQA  KFMSGEVDVITGSVAFGMGVDKSDVRFVVHWDLPKSMEGLYQELGRAGRDGSKAVSVVYHSRETV LLAFLARKPRPLAG+EKGTE GRKRQ+RASLKAVKAVDSVVAYCEK GCRRKALLAHFGEVTGAPAAA    QKK GLAT+SAGS +SNIVPTDICRGTCDWCGGERERIKTDLL LAGARAGG
Sbjct:  105 DAMDGGALEHLVGFLRERSGQSGIVYCHKRDTAEELAKALNRALRKESLLDGRKAFLAMPYHGKMSDHDRTEAQARAKFMSGEVDVITGSVAFGMGVDKSDVRFVVHWDLPKSMEGLYQELGRAGRDGSKAVSVVYHSRETVELLAFLARKPRPLAGEEKGTETGRKRQRRASLKAVKAVDSVVAYCEKLGCRRKALLAHFGEVTGAPAAAXXXXQKKRGLATSSAGSGRSNIVPTDICRGTCDWCGGERERIKTDLLKLAGARAGG 371
[Close]
BLAST of mRNA_Ecto-sp9_F_contig871.16893.1 vs.
Match: ATP-dependent (DNA helicase n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BN62_9STRA)

HSP 1 Score: 152 bits (384), Expect = 2.000e-38
Identity = 87/261 (33.33%), Postives = 132/261 (50.57%), Query Frame = 3 
Query:    3 DAMDGGALEHLVGFLRERRGQ--------SGIVYCHKRDTAEELAKALNRALRKESLLDGRKAFLAMPYHGKMSDHDRTEAQAKFMSGEVDVITGSVAFGMGVDKSDVRFVVHWDLPKSMEGLYQELGRAGRDGSKAVSVVYHSRETVGLLAFLARKPRPLAGKEKGTEAGRKRQQRASLKAVKAVDSVVAYCEKQGCRRKALLAHFGEVTGAPAAAAAAEQKKHGLATASAGSSKSNIVPTDICRGTCDWCGGERERIKT 761
            D+  GGA+  L+ F+R +  Q        +G+VY  +R    +LA+ ++RA    +++       A+PYH  + D  RTE Q ++ SG V+V+  ++AFGMG+D   VR+V+HW+L KS+EG YQE GRAGRDG +A S+VY+    + + +FL +K    +  + G E   K           A+D +  YC  QGCRR+ LL HFGE                              + T +C+ TCD+C      + T
Sbjct:  398 DSSYGGAIADLISFIRSQHRQCEVKNEPCTGVVYVFRRQDTSDLAQKISRACDDANII-------ALPYHAGLKDDLRTETQKRWTSGNVNVVVATIAFGMGIDLPHVRYVIHWNLAKSVEGFYQESGRAGRDGKQARSIVYYDLSDLQMYSFLNKKSFFGSNDQTGEERNHK-----------ALDEMSEYCVLQGCRRQYLLGHFGE-----------------------------SIKTSVCQKTCDYCKDPNATVST 611
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BLAST of mRNA_Ecto-sp9_F_contig871.16893.1 vs.
Match: DNA (helicase n=67 Tax=Bacteria TaxID=2 RepID=A0A494VYP5_9SPHI)

HSP 1 Score: 151 bits (381), Expect = 5.300e-38
Identity = 83/194 (42.78%), Postives = 117/194 (60.31%), Query Frame = 3 
Query:   24 LEHLVGFLRERRGQSGIVYCHKRDTAEELAKALNRALRKESLLDGRKAFLAMPYHGKMSDHDRTEAQAKFMSGEVDVITGSVAFGMGVDKSDVRFVVHWDLPKSMEGLYQELGRAGRDGSKAVSVVYHSRETVGLLAFLARKPRPLAGKEKGTEAGRKRQQRASLKAVKAVDSVVAYCEKQGCRRKALLAHFGE 605
            ++ +V F+R+ +G+SGIVYC  R   EE+A+ALN        L+G KA   +PYH  +    R + Q KF+  +VDVI  ++AFGMG+DK DVR+V+H D+PKSMEG YQE GRAGRDG + V V ++S + +  L     K +P++ +E GT+                +  V+ YCE   CRRK LL +FGE
Sbjct:  222 IKEIVKFVRQNQGKSGIVYCLSRKKVEEVAEALN--------LNGVKA---LPYHAGLDAKVRADTQDKFLMEDVDVIVATIAFGMGIDKPDVRYVIHHDVPKSMEGYYQETGRAGRDGGEGVCVAFYSEKDIDKLQKFM-KDKPVSEREIGTQI---------------LKEVIDYCESSVCRRKQLLHYFGE 388
[Close]
BLAST of mRNA_Ecto-sp9_F_contig871.16893.1 vs.
Match: Uncharacterized (protein n=1 Tax=Treponema sp. CETP13 TaxID=1908540 RepID=A0A1L8N0V0_9SPIR)

HSP 1 Score: 147 bits (371), Expect = 2.680e-37
Identity = 80/198 (40.40%), Postives = 113/198 (57.07%), Query Frame = 3 
Query:   12 DGGALEHLVGFLRERRGQSGIVYCHKRDTAEELAKALNRALRKESLLDGRKAFLAMPYHGKMSDHDRTEAQAKFMSGEVDVITGSVAFGMGVDKSDVRFVVHWDLPKSMEGLYQELGRAGRDGSKAVSVVYHSRETVGLLAFLARKPRPLAGKEKGTEAGRKRQQRASLKAVKAVDSVVAYCEKQGCRRKALLAHFGE 605
            +GGA   +  FL E   +SGI+YC  R   +EL+  L R           K F  +PYH  +S   R + Q KF+ G+VD+I  +VAFGMG++KSDVRFV+H+DLPKS+E  YQE+GRAGRDG  A +++ ++      + F          ++ G E    ++Q         +  ++ YCE +GCRRK LLAHFGE
Sbjct:  220 EGGANLQVEQFLEEHMNESGIIYCFSRKQVDELSAYLKR-----------KHFFVLPYHAGLSSEKREKNQQKFICGKVDIIVATVAFGMGINKSDVRFVLHYDLPKSLEQYYQEIGRAGRDGKPAHALLLYTYADTRKINFFI-------DEKSGVEYDSAKEQ---------LRGMIEYCESKGCRRKVLLAHFGE 390
[Close]
BLAST of mRNA_Ecto-sp9_F_contig871.16893.1 vs.
Match: DNA (helicase n=1 Tax=Methanosarcinales archaeon TaxID=2250255 RepID=A0A662RIW7_9EURY)

HSP 1 Score: 149 bits (377), Expect = 2.900e-37
Identity = 79/198 (39.90%), Postives = 117/198 (59.09%), Query Frame = 3 
Query:   21 ALEHLVGFLRERRGQSGIVYCHKRDTAEELAKALNRALRKESLLDGRKAFLAMPYHGKMSDHDRTEAQAKFMSGEVDVITGSVAFGMGVDKSDVRFVVHWDLPKSMEGLYQELGRAGRDGSKAVSVVYHSRETVGLLAFLARKPRPLAGKEKGTEAGRKRQQRASLKAVKAVDSVVAYCEKQGCRRKALLAHFGEVTG 614
            A + L+ +L+ R+  SGI+YCH R +A++LA  L +           + + A+PYH  +    RTE Q KF+  +V++I  +VAFGMG+DKS+VRFV+H+DLPK++E  YQE GRAGRDG ++  +++ SR  +G L++       +  KE  TE            A K +  +V +CE   CRRK LL +FGE  G
Sbjct:  242 AYDQLLQYLKGRKNDSGIIYCHSRKSADDLANKLKK-----------EGYRALPYHAGLKADLRTETQDKFIKDDVEIIVATVAFGMGIDKSNVRFVIHYDLPKNLETYYQETGRAGRDGEESDCIIFFSRSDMGKLSYF------IDQKEDETE---------KQNAYKKLRCMVDFCESGTCRRKILLEYFGETYG 413
[Close]
BLAST of mRNA_Ecto-sp9_F_contig871.16893.1 vs.
Match: DNA (helicase RecQ n=1 Tax=Pedobacter sp. SYSU D00535 TaxID=2810308 RepID=UPI001A979D67)

HSP 1 Score: 148 bits (374), Expect = 4.790e-37
Identity = 84/194 (43.30%), Postives = 116/194 (59.79%), Query Frame = 3 
Query:   24 LEHLVGFLRERRGQSGIVYCHKRDTAEELAKALNRALRKESLLDGRKAFLAMPYHGKMSDHDRTEAQAKFMSGEVDVITGSVAFGMGVDKSDVRFVVHWDLPKSMEGLYQELGRAGRDGSKAVSVVYHSRETVGLLAFLARKPRPLAGKEKGTEAGRKRQQRASLKAVKAVDSVVAYCEKQGCRRKALLAHFGE 605
            L+ +V F++  +G+SGIVYC  R   EE+A+ALN        L+G KA   +PYH  +    R E Q KF+  EVDVI  ++AFGMG+DK DVR+V+H D+PKSMEG YQE GRAGRDG + V V ++S + +  LA    K +P++ +E GT+                +  V+ Y E   CRRK +L +FGE
Sbjct:  222 LKEIVRFIKGYQGKSGIVYCLSRKKVEEVAEALN--------LNGIKA---LPYHAGLEAKVRAETQDKFLMEEVDVIVATIAFGMGIDKPDVRYVIHHDIPKSMEGYYQETGRAGRDGGEGVCVAFYSEKDIEKLAKFM-KDKPVSEREIGTQI---------------LKEVIDYVESSVCRRKQILHYFGE 388
[Close]
BLAST of mRNA_Ecto-sp9_F_contig871.16893.1 vs.
Match: ATP-dependent (DNA helicase RecQ (Fragment) n=1 Tax=Sphingobacteriales bacterium TaxID=2044944 RepID=A0A4Q3FBS8_9SPHI)

HSP 1 Score: 143 bits (360), Expect = 6.250e-37
Identity = 76/194 (39.18%), Postives = 116/194 (59.79%), Query Frame = 3 
Query:   24 LEHLVGFLRERRGQSGIVYCHKRDTAEELAKALNRALRKESLLDGRKAFLAMPYHGKMSDHDRTEAQAKFMSGEVDVITGSVAFGMGVDKSDVRFVVHWDLPKSMEGLYQELGRAGRDGSKAVSVVYHSRETVGLLAFLARKPRPLAGKEKGTEAGRKRQQRASLKAVKAVDSVVAYCEKQGCRRKALLAHFGE 605
            ++ ++ ++++  G+SGI+YC  R   EE+A+ LN        L+G KA   +PYH  +    R + Q KF+  +V+VI  ++AFGMG+DK DVRFV+H D+PKSMEG YQE GRAGRDG + V + +++++ V  LA    K +P++ +E GT+                +  V+ Y E   CRRK +L +FGE
Sbjct:  145 IKEIIRYIKQNTGKSGIIYCLSRKKVEEVAETLN--------LNGIKA---LPYHAGLEPKVRADTQDKFLMEDVEVIVATIAFGMGIDKPDVRFVIHHDIPKSMEGYYQETGRAGRDGGEGVCIAFYAQKDVDKLAKFM-KDKPVSEREIGTQI---------------LKEVIDYAESAVCRRKQILHYFGE 311
[Close]
BLAST of mRNA_Ecto-sp9_F_contig871.16893.1 vs.
Match: DNA (helicase n=1 Tax=Methanimicrococcus blatticola TaxID=91560 RepID=A0A484F682_9EURY)

HSP 1 Score: 148 bits (373), Expect = 8.720e-37
Identity = 78/194 (40.21%), Postives = 112/194 (57.73%), Query Frame = 3 
Query:   24 LEHLVGFLRERRGQSGIVYCHKRDTAEELAKALNRALRKESLLDGRKAFLAMPYHGKMSDHDRTEAQAKFMSGEVDVITGSVAFGMGVDKSDVRFVVHWDLPKSMEGLYQELGRAGRDGSKAVSVVYHSRETVGLLAFLARKPRPLAGKEKGTEAGRKRQQRASLKAVKAVDSVVAYCEKQGCRRKALLAHFGE 605
            +E L G++++ R +SGI+YC  RD+ E LA  LN+             F A+PYH  +SD  R   Q KF+  +VD+I  +VAFGMG+DK DVRFV+H+DLPK++E  YQE GR GRDG +   +++ SR     + FL  K +P + KE+               A + +  +++YCE   CRR  LL +FGE
Sbjct:  219 MEQLEGYIKKNRNKSGIIYCQSRDSVERLATRLNKL-----------GFSALPYHAGLSDDKRARHQDKFIRDDVDIIVATVAFGMGIDKPDVRFVIHYDLPKNLESYYQETGRGGRDGLECECILFFSRGDWHKIRFLIEK-KP-SKKERDL-------------AFQQLSQIISYCESTDCRRNVLLRYFGE 386
[Close]
BLAST of mRNA_Ecto-sp9_F_contig871.16893.1 vs.
Match: DNA (helicase n=5 Tax=Mucilaginibacter TaxID=423349 RepID=A0A3E2NYD8_9SPHI)

HSP 1 Score: 147 bits (371), Expect = 1.230e-36
Identity = 81/195 (41.54%), Postives = 116/195 (59.49%), Query Frame = 3 
Query:   21 ALEHLVGFLRERRGQSGIVYCHKRDTAEELAKALNRALRKESLLDGRKAFLAMPYHGKMSDHDRTEAQAKFMSGEVDVITGSVAFGMGVDKSDVRFVVHWDLPKSMEGLYQELGRAGRDGSKAVSVVYHSRETVGLLAFLARKPRPLAGKEKGTEAGRKRQQRASLKAVKAVDSVVAYCEKQGCRRKALLAHFGE 605
            A++ +V F+++ +G+SGI+YC  R   EE+A+ALN        L+G     A+PYH  +    R + Q KF+  +V+VI  ++AFGMG+DK DVR+VVH D+PKSMEG YQE GRAGRDG + V V ++S + +  L     K +P+A +E GT+                +  V+ Y E   CRRK LL +FGE
Sbjct:  221 AIKEIVKFVKQNQGKSGIIYCLSRKKVEEVAEALN--------LNG---VRALPYHAGLDPKVRADTQDKFLMEDVEVIVATIAFGMGIDKPDVRYVVHHDMPKSMEGYYQETGRAGRDGGEGVCVAFYSAKDIDKLQKFM-KDKPVAEREIGTQI---------------LKEVIDYAESSVCRRKQLLHYFGE 388
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig871.16893.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
ATP-dependent3.820e-16895.47DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
ATP-dependent1.500e-16393.63DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
ATP-dependent2.000e-3833.33DNA helicase n=1 Tax=Corethron hystrix TaxID=21677... [more]
DNA5.300e-3842.78helicase n=67 Tax=Bacteria TaxID=2 RepID=A0A494VYP... [more]
Uncharacterized2.680e-3740.40protein n=1 Tax=Treponema sp. CETP13 TaxID=1908540... [more]
DNA2.900e-3739.90helicase n=1 Tax=Methanosarcinales archaeon TaxID=... [more]
DNA4.790e-3743.30helicase RecQ n=1 Tax=Pedobacter sp. SYSU D00535 T... [more]
ATP-dependent6.250e-3739.18DNA helicase RecQ (Fragment) n=1 Tax=Sphingobacter... [more]
DNA8.720e-3740.21helicase n=1 Tax=Methanimicrococcus blatticola Tax... [more]
DNA1.230e-3641.54helicase n=5 Tax=Mucilaginibacter TaxID=423349 Rep... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig871contigEcto-sp9_F_contig871:3844..10213 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score490.3
Seed ortholog evalue5.5e-136
Seed eggNOG ortholog2880.D7FXK3
KEGG koko:K10901
KEGG Pathwayko03440,ko03460,map03440,map03460
KEGG ModuleM00295,M00414
EggNOG free text desc.four-way junction helicase activity
EggNOG OGsCOG0514@1,KOG0351@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03400
Hectar predicted targeting categoryother localisation
Exons6
Model size799
Cds size789
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930916.7371664-UTR-Ecto-sp9_F_contig871:3843..38511622930916.7371664-UTR-Ecto-sp9_F_contig871:3843..3851Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig871 3844..3851 +
1692278947.7347827-UTR-Ecto-sp9_F_contig871:3843..38511692278947.7347827-UTR-Ecto-sp9_F_contig871:3843..3851Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig871 3844..3851 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930916.7603498-CDS-Ecto-sp9_F_contig871:3851..39321622930916.7603498-CDS-Ecto-sp9_F_contig871:3851..3932Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig871 3852..3932 +
1692278947.7526023-CDS-Ecto-sp9_F_contig871:3851..39321692278947.7526023-CDS-Ecto-sp9_F_contig871:3851..3932Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig871 3852..3932 +
1622930916.7798855-CDS-Ecto-sp9_F_contig871:4757..48921622930916.7798855-CDS-Ecto-sp9_F_contig871:4757..4892Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig871 4758..4892 +
1692278947.763974-CDS-Ecto-sp9_F_contig871:4757..48921692278947.763974-CDS-Ecto-sp9_F_contig871:4757..4892Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig871 4758..4892 +
1622930916.8021107-CDS-Ecto-sp9_F_contig871:5639..57191622930916.8021107-CDS-Ecto-sp9_F_contig871:5639..5719Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig871 5640..5719 +
1692278947.7739043-CDS-Ecto-sp9_F_contig871:5639..57191692278947.7739043-CDS-Ecto-sp9_F_contig871:5639..5719Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig871 5640..5719 +
1622930916.8209546-CDS-Ecto-sp9_F_contig871:6323..64841622930916.8209546-CDS-Ecto-sp9_F_contig871:6323..6484Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig871 6324..6484 +
1692278947.784041-CDS-Ecto-sp9_F_contig871:6323..64841692278947.784041-CDS-Ecto-sp9_F_contig871:6323..6484Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig871 6324..6484 +
1622930916.83683-CDS-Ecto-sp9_F_contig871:8585..87531622930916.83683-CDS-Ecto-sp9_F_contig871:8585..8753Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig871 8586..8753 +
1692278947.795793-CDS-Ecto-sp9_F_contig871:8585..87531692278947.795793-CDS-Ecto-sp9_F_contig871:8585..8753Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig871 8586..8753 +
1622930916.8522415-CDS-Ecto-sp9_F_contig871:10049..102131622930916.8522415-CDS-Ecto-sp9_F_contig871:10049..10213Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig871 10050..10213 +
1692278947.8070962-CDS-Ecto-sp9_F_contig871:10049..102131692278947.8070962-CDS-Ecto-sp9_F_contig871:10049..10213Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig871 10050..10213 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig871.16893.1prot_Ecto-sp9_F_contig871.16893.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig871 3852..10213 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig871.16893.1

>prot_Ecto-sp9_F_contig871.16893.1 ID=prot_Ecto-sp9_F_contig871.16893.1|Name=mRNA_Ecto-sp9_F_contig871.16893.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=263bp
MDGGALEHLVGFLRERRGQSGIVYCHKRDTAEELAKALNRALRKESLLDG
RKAFLAMPYHGKMSDHDRTEAQAKFMSGEVDVITGSVAFGMGVDKSDVRF
VVHWDLPKSMEGLYQELGRAGRDGSKAVSVVYHSRETVGLLAFLARKPRP
LAGKEKGTEAGRKRQQRASLKAVKAVDSVVAYCEKQGCRRKALLAHFGEV
TGAPAAAAAAEQKKHGLATASAGSSKSNIVPTDICRGTCDWCGGERERIK
TDLLTLAGARAGG
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mRNA from alignment at Ecto-sp9_F_contig871:3844..10213+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig871.16893.1 ID=mRNA_Ecto-sp9_F_contig871.16893.1|Name=mRNA_Ecto-sp9_F_contig871.16893.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=6370bp|location=Sequence derived from alignment at Ecto-sp9_F_contig871:3844..10213+ (Ectocarpus species9 EcSCA_722f female)
AGGACGCCATGGATGGAGGCGCGCTCGAGCACCTGGTTGGCTTCCTGAGG
GAGAGGCGTGGCCAGTCGGGGATCGTGTACTGCCACAAGGTGCCGTGATT
TTTTTAGTTAACCACTCTCCTGTCTACATACACTGAAGGGTGTAGTACAC
GTCTCACGACGAAAAATGGGGGGACTGTCGCCATGATAAATAGGACGAAA
GCAACAACAACAATTCTCTCGTCTTGGTTTCCGTAACCCCTCTCCCCGTG
AGTTCGTTCTCTTTGCAGAGGGCCTCATCTACCGCCACGAAGTGAATTGA
CTGCCGCAGTGCCGGGTCTAAGTAGTATTCGCCGAGCAACTCGTTCCCAC
GTGTGTCTTTCTGGGTGGGTCCCTTGATCCTCGATTTTGCGAGACGAAAT
GCAGTACGTGTGGTGATCATCCTGCTGGTGACAACGCGATAAGCTGGCAG
TGCTAAACACTAAGGAAGACTGGGCTACAGCCACACCATCTAGTGAGGCA
TACATAGAGTGTGAAACACGAGAAGTCCATGCTCCGTATATTTTCCTTCT
TTCTTTTTTCTTCGTCTCAAACCGTTCTTGTGTTTTGGCTCACATGCATG
TGGGAGGAGTCATGTATTGGAGAACATGCACGGGAGGGGCGCAGGGACAA
TTGGTGGTGGTGATCTTGCCGTATGTCGTTTGTGGTGTCGCTACTGGTAT
TCGTGACGATTTCGTGCTCCGTGTCAATGTCACTGCTGCTAATCCTGCTG
CTGCCGCCGCTCCTGGTGCTGGTGCTGGTGCTGGTGCTGGTGCTGCTATT
TCTTCTCTTGCTGCTGCGGGCAAGTCGTCACAGCGGTTGACGTGGTGCTC
CCGCCGTATCGTCGCCGTTTCCGCCGTCGTTCTCGTTGTTGCCGTCATCC
CGACCCCTGGGCAGAGGGACACCGCAGAGGAACTGGCGAAGGCCCTCAAC
CGAGCGCTGCGAAAGGAGTCACTCCTGGACGGCAGGAAGGCGTTCTTGGC
GATGCCCTACCACGGGAAGATGTCCGACCACGACAGGACCGAAGCCCAGG
CACGTGTTCTTTTTTGTCGTTGCGTACACCCGCACGCCTGTTCATGTAGA
TCATGCATTCATTCTACCGTTTGACATGGGGCCATTCATTCTTTCTCGCA
TACACCTGGTTTGTTGTGGTGTCCACGTATCTCTCTCTCTCTTTTTTTTT
GTCTCATTGTTTTTTCCGTTGTCTCTTGGCCGTACGTTCGTGTTGGCTGG
ATGGAAAAAGCGTTATTTTTGTTTTCTTTCTCTCGTTCGGTATCGAGTTG
TACGTTTCATTCGTCACTCACCCACGAACGATCGATCGGTCGCCATCGGA
GGCTTTGCCATCGTCTACTTGACGGAAATTTGCCGGGGGTCGGACAAGGC
TTTTCGTTTTTTTTTATTGCATTGATTTAGCCGGGGGGTGGGAGCCCGGA
GGTGGAAAATCCGCCCCGCCGAGCTATTAGATACTCTTGCCGAAGCTACT
GTAGAAGCGCTTGCTTGAATGGGGTTTCACATCATGTATCATGCTGTACG
GCGGCTCACTGACAGCTGTGAATCGGGCCTCCATGGCCACGACAGCCCGC
ACCCTGTGAACGCGACCTACTTTTCCGTCTGATTTGCACAATTGGTCCTT
ACGCATGCCTATTTTTTTTCATTTCCACGTCTATCCCGACGGCAAGTGAT
TGCCGTCTCCTCCTGCTGTCTTCCTCTCGTCTACCGTAAGTCTCCTTCGT
TTCTTTCTCTCAACTCGCTCGTTTTTTTTTTTACCTTGAATTCCAGGCGA
AGTTTATGTCGGGAGAAGTGGACGTGATCACAGGCAGCGTGGCGTTCGGC
ATGGGCGTCGACAAGAGCGACGTAAGGTGATCGGAAAATCGAAGAACGGA
AGGATAGATCCCAATTTACGAAGACAATCATCATATCCACTCTTTGCCGA
AAACCTGTCTCATTCTTGGTTTTCTTCTTGTTCTGTGGAGCTTTTTTCGA
AATACATCCGAACGAATTGTATCAAAACTCGGTTTTCTTTCTTTTTGCGG
GGGATCTACATCCACGCCTGACCGTGTGGGGATTTTGTGTGTTTCTCCAC
GTACATGTCGCCTTTCCACGTCGAGAAAGACTTCCGCAAGATCTGCAACG
GTAGTGTGTCGTTTCAAACCAAGATGCGGAAAAGCCCTGCGAAGTTTTTG
AGCGCTTGCGTCACGGCCTTTTGGTGTCGTTGCTGGCTGCTGTTGGTTTC
GTGGTACAGTGGCGGCTACGGTTTAAGAGAGACTTTTCAAGAGAAAGAAG
CGATTTAAGAGAGTCGAACTGGCTTGTCGCGACCATGAGAAATACATACA
TTTCACTGTACGGTTTAAGAGACAACCGGATTTAAGAGAGAAATACTGGC
TTGTCACGACCCTCTACATGTAACACACCGTAGCCGCCACATTGTACCTT
GATCTCGGTGCCCTACAATACGCATGCTAGGTTCGTCGTGCACTGGGACC
TGCCGAAGAGCATGGAGGGCTTGTACCAGGAGCTAGGGAGGGCAGGGCGA
GACGGATCGAAGGCGGTCAGCGTGGTCTACCACAGCCGAGAGACGGTCGG
GCTCCTGGCCTTCTTGGCTAGGAAACCCCGCCCACTCGCTGGTTGGTTTT
TTTGCTGTTGTTGTTGTTGTTGCTGTTGAAGAAATTCTTCGGTGGGCGAT
GTCTTCCATTTCATTATTTCAATATAACCAAGCACCGTTTTTGCTGTTTT
CGTTCATAGCTTCACAATGATATTCATTCCTGTGTTTTATAGAGCAAACA
GCTGTTTTGTTTTGTTGTCCTAATTCTTTCATTAGACCAACGATTTGTTG
TCATTCTCTCAATGGAGCAAACCAACGTTGTTTTTGTTGTGTTCATTTTT
TTCACTAGAGCCAAACGACATTTTTCTTTGTGATGCGCATTCCTTCGATG
AAGCGAAGACAACATGCTATATTGTGTTTTATAGTCCACTAGAGCACAAC
AACGCTTTCTAATGTTGTGTTCGTTCTTTCACAAAATAGAGCGAAACGAT
TTTGTTCTGTTCATAATTTCCCTCTTTTGCTATGAAGAGCACTTCAGCAT
TCTCATTTTTGTGACCCTTCGTTCACTAGAGCAATCAACTCTTTATTTGT
GTTTTTTCTTGCAATAGAACGGCATATTTGATTGGCGTATCTCCTTTTAA
CTGGAGCAAAGCGGTAATTTCTATGGGTGTGTCCATTCTTTCACTATCAC
GGCAACGCGACTAAAGCGAACCAACATTTTTCATTTCCGTGTTTCTTCTT
CACGAGAGCGGCAAAACAATCTTCTTGTTGTGCTTAGTCTTTGGTATTGC
CAAACAACGTTTCTTGTGTTAATTCTTGCAGTAGAGCAACCCAATTCTGT
CACTGTCTCGTTCATTGTTCCACTCCACGCAGAGCCAAACAACTTCCATT
GCGGGTTTCATTCGTTCAATAGAACAACGCTGATTGTTTGGTCCACTTTT
TTTTTTAGCAACATACTTATATATTTTTTTGTGCATGTATTCATTAGACG
ACATTGACGTTTTCAGTGCCGCGTCCGTTCGTTCACTAGAGCAAAACGAC
AATATTATTATTTTTTTCTTTTATTGTTTTCTTTCGAATCGCCTTGATTA
TATTTCTGTGGCCTACGGAGGGAGACATTCCCCGTACCACACGTTTCGCA
CGACACAAAGCCTCTGCGGTATCCTAACGTGTCTCTGCTACTAAAACACA
AAATCTCCCTCCGAATACTAAATACCAGACGGGACGAAACTGTTGCACAG
TAGCAGTCTCGGACGATTGAGCCTCCCAATGGTAGGCACTACCATTCAGA
AAACACCCGAATGCTACGCCATACTTGTACGTGGCGAACGGTTGCACCAA
CTCCGAGTCACAGAAATATTAAGAGGCCTCTCCTAGGTAAGTCCTCACTC
GTAACACCTCCTATCCCCCACCTTCGAAAGAAAAGGGGTGGGTGAGCGGG
AGAAAAGCTACGAATTTCTTCTAGCTAGGTCCAAACTTCGATGTAGCTAG
CTGCTGCCCTCCTTCCCGCGTGACCCTTCGACGCGGGCTGCGTGTTACAC
ACTGTCTATTCCTCAACACGTGGCCCTTGGTCCAGTAGACACGCGTCTAT
CAAACTCTTGCTGCAGGAGCAGCGAGGCAGCGGAATGAGAACTCCGTGAG
ACCTTTCTCTTTGTAAGATCCCAGAAAACCAAACCAGGACAACCCAACCA
ACACGCCTCCAGGGCGGCACAACAAGAACCCAAATACAAACGTAGATCTG
GGAGATGTTCCGAATTCTTCCGTGCACAACAAACTACAGTTTATTCGGTC
TTCGACAACAAACTTTCATTTCATTTTGGTGAGGAGATTGGAACGGAAGC
GGGCCGGAAAGCGAAATAACAGTTTTCATTGTTGTGTTCCTTCTTTCACG
AGAGCAAGAAACAAAATTCCTTTTGCCGTGCTTGGTTTTTGTTAAGGGCG
AAACAACGTTTGTTGGTTTGTTCATTCTTGGCAAAACATTTTTTTTCTGT
TTTTGTTCGTTGTTTCACTGCAAGCAGAGCCAACAACATTTTCCATTGGG
GTGTTCATTCGTTGAATAGAACAATGCTGTTTTTTTATTGTCCATTTTTT
TATTCGACCAAACTAGTGTATTCTATTCTTGTGTTCACATTTTTTTACTA
CATTAGAGCAAATCGACACTTCCATTGTTGGGTTCGTTGTAGGTAAGGAG
AAAGGGACGGAAGCGGGCCGGAAGCGCCAGCAGCGAGCGTCCCTGAAGGC
CGTCAAGGCTGTTGATTCAGTGGTGGCCTACTGCGAGAAGCAGGGCTGCC
GGCGGAAGGCCCTCCTTGCCCATTTCGGAGAGGTGACCGGAGCACCAGCG
GCAGCGGCAGGTCAGCAGTAGCTATCGTTACCGGTTTTACCGCCTTGTGT
TTGGAGCGACTGCTTGTTGCTGCACGAGAAGCTGAGGCAAGTTTGGTGGA
GGGGCGGATGTTTTGTAGCGACAAGGGGCGTCCCACGTTCATTCTGGATC
TGGATGTCTGTCTCTGTCTCCCGCTCTGTCCCTGTCTTTGTCTCGCCGCC
ATTTCTTCCTGTAGCTTCCAGACAGTCATTCTTGGGGACTTCGGGCCGAT
TGTGATTGTTCTTCCTGGTTGCGGGCGCTTGCTTTTTTGTGTTTGTGACG
ACCCTTCACCTCGGACGCCACACAAGTGCTCACAGCAATCGATCGTTGTA
GGGCCAGTTGTGTCGCCGTCCAAGAAGCGAGTAATAGTGTTGTATGGGAA
TGGACAATGAATGAAAGAACACAAGACCTTGCGAATTGCACCTCGTTCTC
TTTCTCTCTATTGTTTTTTTCCCCTTCCCGGCACACACAAACGACACCGG
CGTTCCTTCGTGGTGGCGCGTAGCGTTTGATTGTTTTTGCCAAGGCGGTG
GTTGCTAAGAGTACACGTAAGTGTAGACAGCACATGGTATCCCCGTCGCT
CCTCCATCGACTTTGTGTGTTCACAATACTGTAGCCCGAAGTCTGGTGGC
GAAGGCGAAGACGAAGGCATAACGCTGCATACTTTGTTTTTGTTTCTCCT
GTCCGTAAACGAGCTTAAAATATCTAGTGACAAAGCTTTGAGATGTTGGA
GTTTTTAGACTTTCCGTCGGTGGCGGGGAGATAGCTTCCGACGACGCACA
TCCGAGCGAATGGACTCTTTTTTTTTTTACTAGGACGAAGTTGGTCATTG
AGTAATGAACCAGTTCCTGCCTTTTTTTTTGTTTTCACGATGTACCTCCA
CCCATGCAAACACGTACCCGGGAGAATAGGAGTAGGCACAGACTCGGCCA
CACCTCGGCAGGGGCATGTCCGATATGTGTCCATGGTGTTGTGCAACGCT
GCTTAAACGAGCACGCAGTAGTTAGCTCGCCGGCATCAACTAGAACTTGA
TGCTTGACACGCATCCTGCTCGTCCTGCACATCGCGTACGGTCACACGAC
ACCACCCCACGCAAGCTTGTGCTAACGATAGTTGCCGTGCTGGATATCCG
TGGCGTGAAAGTCCCGCGGCAAGGCCACCGTACCCACGAACAATTCAACC
GAGTTCGTCCACACTTACTCGTTAACCTTGCGCACTCTACCGCTGTGTTG
TTTGCTTTTTTCGGCTCGGCCGTGTGCTCCCGCAACACGCGTATGTACGC
GCACAGCTGCGGAGCAGAAGAAGCACGGGCTTGCGACAGCTTCCGCCGGC
AGCAGCAAAAGCAACATCGTACCCACCGACATCTGCCGAGGAACCTGCGA
CTGGTGTGGTGGCGAGCGCGAGAGGATCAAGACGGACCTCTTGACACTGG
CGGGAGCTAGGGCAGGGGGG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig871:3844..10213+

>mRNA_Ecto-sp9_F_contig871.16893.1 ID=mRNA_Ecto-sp9_F_contig871.16893.1|Name=mRNA_Ecto-sp9_F_contig871.16893.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1578bp|location=Sequence derived from alignment at Ecto-sp9_F_contig871:3844..10213+ (Ectocarpus species9 EcSCA_722f female)
ATGGATGGAGGCGCGCTCGAGCACCTGGTTGGCTTCCTGAGGGAGAGGCG
TGGCCAGTCGGGGATCGTGTACTGCCACAAGATGGATGGAGGCGCGCTCG
AGCACCTGGTTGGCTTCCTGAGGGAGAGGCGTGGCCAGTCGGGGATCGTG
TACTGCCACAAGAGGGACACCGCAGAGGAACTGGCGAAGGCCCTCAACCG
AGCGCTGCGAAAGGAGTCACTCCTGGACGGCAGGAAGGCGTTCTTGGCGA
TGCCCTACCACGGGAAGATGTCCGACCACGACAGGACCGAAGCCCAGAGG
GACACCGCAGAGGAACTGGCGAAGGCCCTCAACCGAGCGCTGCGAAAGGA
GTCACTCCTGGACGGCAGGAAGGCGTTCTTGGCGATGCCCTACCACGGGA
AGATGTCCGACCACGACAGGACCGAAGCCCAGGCGAAGTTTATGTCGGGA
GAAGTGGACGTGATCACAGGCAGCGTGGCGTTCGGCATGGGCGTCGACAA
GAGCGACGTAAGGCGAAGTTTATGTCGGGAGAAGTGGACGTGATCACAGG
CAGCGTGGCGTTCGGCATGGGCGTCGACAAGAGCGACGTAAGGTTCGTCG
TGCACTGGGACCTGCCGAAGAGCATGGAGGGCTTGTACCAGGAGCTAGGG
AGGGCAGGGCGAGACGGATCGAAGGCGGTCAGCGTGGTCTACCACAGCCG
AGAGACGGTCGGGCTCCTGGCCTTCTTGGCTAGGAAACCCCGCCCACTCG
CTGGTTCGTCGTGCACTGGGACCTGCCGAAGAGCATGGAGGGCTTGTACC
AGGAGCTAGGGAGGGCAGGGCGAGACGGATCGAAGGCGGTCAGCGTGGTC
TACCACAGCCGAGAGACGGTCGGGCTCCTGGCCTTCTTGGCTAGGAAACC
CCGCCCACTCGCTGGTAAGGAGAAAGGGACGGAAGCGGGCCGGAAGCGCC
AGCAGCGAGCGTCCCTGAAGGCCGTCAAGGCTGTTGATTCAGTGGTGGCC
TACTGCGAGAAGCAGGGCTGCCGGCGGAAGGCCCTCCTTGCCCATTTCGG
AGAGGTGACCGGAGCACCAGCGGCAGCGGCAGGTAAGGAGAAAGGGACGG
AAGCGGGCCGGAAGCGCCAGCAGCGAGCGTCCCTGAAGGCCGTCAAGGCT
GTTGATTCAGTGGTGGCCTACTGCGAGAAGCAGGGCTGCCGGCGGAAGGC
CCTCCTTGCCCATTTCGGAGAGGTGACCGGAGCACCAGCGGCAGCGGCAG
CTGCGGAGCAGAAGAAGCACGGGCTTGCGACAGCTTCCGCCGGCAGCAGC
AAAAGCAACATCGTACCCACCGACATCTGCCGAGGAACCTGCGACTGGTG
TGGTGGCGAGCGCGAGAGGATCAAGACGGACCTCTTGACACTGGCGGGAG
CTAGGGCAGGGGGGCTGCGGAGCAGAAGAAGCACGGGCTTGCGACAGCTT
CCGCCGGCAGCAGCAAAAGCAACATCGTACCCACCGACATCTGCCGAGGA
ACCTGCGACTGGTGTGGTGGCGAGCGCGAGAGGATCAAGACGGACCTCTT
GACACTGGCGGGAGCTAGGGCAGGGGGG
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