mRNA_Ecto-sp9_F_contig8703.16892.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig8703.16892.1
Unique NamemRNA_Ecto-sp9_F_contig8703.16892.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8703.16892.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8703contigEcto-sp9_F_contig8703:3051..3366 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size318
Cds size315
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930916.454728-CDS-Ecto-sp9_F_contig8703:3050..33651622930916.454728-CDS-Ecto-sp9_F_contig8703:3050..3365Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8703 3051..3365 +
1692278947.6323354-CDS-Ecto-sp9_F_contig8703:3050..33651692278947.6323354-CDS-Ecto-sp9_F_contig8703:3050..3365Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8703 3051..3365 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8703.16892.1prot_Ecto-sp9_F_contig8703.16892.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig8703 3051..3365 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig8703.16892.1

>prot_Ecto-sp9_F_contig8703.16892.1 ID=prot_Ecto-sp9_F_contig8703.16892.1|Name=mRNA_Ecto-sp9_F_contig8703.16892.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=105bp
LLTPPVELPPSRTATTAQTSRPATVVLAAGRCSKIAADHAWHVLGNCCSC
GEMCRQKKKKKQLTTAVQFFDAVLCLTTQEPVRACSGSSYPYHAAFAAPH
AAVSG
back to top

mRNA from alignment at Ecto-sp9_F_contig8703:3051..3366+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig8703.16892.1 ID=mRNA_Ecto-sp9_F_contig8703.16892.1|Name=mRNA_Ecto-sp9_F_contig8703.16892.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=316bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8703:3051..3366+ (Ectocarpus species9 EcSCA_722f female)
CTGCTGACACCACCCGTAGAACTCCCACCATCACGCACAGCAACGACAGC
ACAGACTTCACGGCCAGCCACAGTGGTGCTCGCGGCGGGACGCTGCTCCA
AGATAGCAGCCGATCATGCTTGGCACGTGCTGGGCAACTGCTGTAGTTGC
GGCGAGATGTGCCGCCAGAAGAAGAAGAAGAAGCAACTGACGACCGCAGT
GCAATTCTTTGATGCTGTTCTCTGTCTGACCACACAGGAGCCCGTTCGCG
CCTGCTCCGGCTCTTCGTATCCATACCATGCGGCGTTCGCTGCCCCACAC
GCTGCTGTGTCTGGTT
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8703:3051..3366+

>mRNA_Ecto-sp9_F_contig8703.16892.1 ID=mRNA_Ecto-sp9_F_contig8703.16892.1|Name=mRNA_Ecto-sp9_F_contig8703.16892.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=630bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8703:3051..3366+ (Ectocarpus species9 EcSCA_722f female)
CTGCTGACACCACCCGTAGAACTCCCACCATCACGCACAGCAACGACAGC
ACAGACTTCACGGCCAGCCACAGTGGTGCTCGCGGCGGGACGCTGCTCCA
AGATAGCAGCCGATCATGCTTGGCACGTGCTGGGCAACTGCTGTAGTTGC
GGCGAGATGTGCCGCCAGAAGAAGAAGAAGAAGCAACTGACGACCGCAGT
GCAATTCTTTGATGCTGTTCTCTGTCTGACCACACAGGAGCCCGTTCGCG
CCTGCTCCGGCTCTTCGTATCCATACCATGCGGCGTTCGCTGCCCCACAC
GCTGCTGTGTCTGGTCTGCTGACACCACCCGTAGAACTCCCACCATCACG
CACAGCAACGACAGCACAGACTTCACGGCCAGCCACAGTGGTGCTCGCGG
CGGGACGCTGCTCCAAGATAGCAGCCGATCATGCTTGGCACGTGCTGGGC
AACTGCTGTAGTTGCGGCGAGATGTGCCGCCAGAAGAAGAAGAAGAAGCA
ACTGACGACCGCAGTGCAATTCTTTGATGCTGTTCTCTGTCTGACCACAC
AGGAGCCCGTTCGCGCCTGCTCCGGCTCTTCGTATCCATACCATGCGGCG
TTCGCTGCCCCACACGCTGCTGTGTCTGGT
back to top