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Homology
BLAST of mRNA_Ecto-sp9_F_contig8703.16891.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTM5_ECTSI) HSP 1 Score: 340 bits (871), Expect = 3.090e-111 Identity = 167/169 (98.82%), Postives = 168/169 (99.41%), Query Frame = 1
Query: 1 MVGVLRVVSAAGDALVDIRPDWKSLDDASGATVGEVFRSSEVLQMYHLQATAQLYEQGGLNHDMSFFLTGVAFYSVESPDVKVSIAYHPTNMTISLLPVISEDGRELRWDHQAASVSYVMGVDQAYWNAGSYMGETTGAFFSYAVEFSLEYHRLHPRYQPFSVYEDYPG 507
MVGVLRVVSAAGDALVDIRPDWKSLDDASGATVGEVFRSSEVLQMYHLQATAQLYEQGGLNHDMSFFLTGVAFYSVE PDVKVSIAYHPTNMTISLLPVISEDGRELRWDHQAASVSYVMGVDQAYWNAGSYMGETTGAFFSYAVEFSLE+HRLHPRYQPFSVYEDYPG
Sbjct: 1 MVGVLRVVSAAGDALVDIRPDWKSLDDASGATVGEVFRSSEVLQMYHLQATAQLYEQGGLNHDMSFFLTGVAFYSVERPDVKVSIAYHPTNMTISLLPVISEDGRELRWDHQAASVSYVMGVDQAYWNAGSYMGETTGAFFSYAVEFSLEHHRLHPRYQPFSVYEDYPG 169
BLAST of mRNA_Ecto-sp9_F_contig8703.16891.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI22_9PHAE) HSP 1 Score: 335 bits (860), Expect = 7.990e-111 Identity = 164/169 (97.04%), Postives = 167/169 (98.82%), Query Frame = 1
Query: 1 MVGVLRVVSAAGDALVDIRPDWKSLDDASGATVGEVFRSSEVLQMYHLQATAQLYEQGGLNHDMSFFLTGVAFYSVESPDVKVSIAYHPTNMTISLLPVISEDGRELRWDHQAASVSYVMGVDQAYWNAGSYMGETTGAFFSYAVEFSLEYHRLHPRYQPFSVYEDYPG 507
MVGVLRVVSAAGDALVDIRPDWKSLDDASGATVG VFRSSEVLQMYHLQATA+LYEQGGLNHDMSFFLTGVA+YSVE PDVKVSIAYHPTNMTISLLPVISEDGRELRWDHQAASVSYVMGV+QAYWNAGSYMGETTGAFFSYAVEFSLEYHRLHPRYQPFSVYEDYPG
Sbjct: 1 MVGVLRVVSAAGDALVDIRPDWKSLDDASGATVGAVFRSSEVLQMYHLQATAELYEQGGLNHDMSFFLTGVAYYSVERPDVKVSIAYHPTNMTISLLPVISEDGRELRWDHQAASVSYVMGVEQAYWNAGSYMGETTGAFFSYAVEFSLEYHRLHPRYQPFSVYEDYPG 169
BLAST of mRNA_Ecto-sp9_F_contig8703.16891.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZL91_9STRA) HSP 1 Score: 149 bits (376), Expect = 5.010e-39 Identity = 76/174 (43.68%), Postives = 104/174 (59.77%), Query Frame = 1
Query: 55 RPDWKSLDDASGATVGEVFRSSEVLQMYHLQATAQLYEQGGLNHDMSFFLTGVAFYSVESPDVKVSIAYHPTNMTISLLPVISEDGRELRWDHQAASVSYVMGVDQA-----------------------YWNAGSYMGETTGAFFSYAVEFSLEYHRLHPRYQPFSVYEDYPG 507
RP W+ LDD T+ + F +EV+QMYHL A LYEQGGLNH ++F LT +AF S+E+ +V + Y P+NMTISL+P+IS+DG + W H AS Y +D YW++ SY+ TTG+ FS AV+ + +YH+ +P YQPFSVY+ YPG
Sbjct: 27 RPTWQVLDD----TLSDFFGGAEVVQMYHLGAIDTLYEQGGLNHALNFRLTALAFKSMETESSQVVLCYQPSNMTISLVPIISDDGLSVTWSHLGASAVYTKDIDXXXXXXXXXXXXXXXXXXXXXXXXXYWSSASYLASTTGSMFSAAVQLAAKYHQENPHYQPFSVYQKYPG 196
BLAST of mRNA_Ecto-sp9_F_contig8703.16891.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1C8_9STRA) HSP 1 Score: 70.5 bits (171), Expect = 2.100e-11 Identity = 38/86 (44.19%), Postives = 54/86 (62.79%), Query Frame = 1
Query: 265 PTNMTISLLPVISE--DGRE---LRWDHQAASVSYVMGVDQAYWNAGSYMGETTGAFFSYAVEFSLEYHRLHPRYQPFSVYEDYPG 507
P ++TIS+LP I E DG + L W H AAS+ Y +D W++ +YMG G+ F Y ++++L+Y H YQPFSVY+ YPG
Sbjct: 2 PVDLTISMLPEIQEKEDGSQDATLVW-HNAASIYYESDIDSTVWDSITYMGTMGGSTFRYLLDYALDYGVKHTFYQPFSVYDAYPG 86
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8703.16891.1 vs.
Analysis Date: 2022-09-19 ( Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 4
| Match Name | E-value | Identity | Description | |
|---|
| Uncharacterized | 3.090e-111 | 98.82 | protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... | [more] |
| Uncharacterized | 7.990e-111 | 97.04 | protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... | [more] |
| Uncharacterized | 5.010e-39 | 43.68 | protein n=1 Tax=Tribonema minus TaxID=303371 RepID... | [more] |
| Hypothetical | 2.100e-11 | 44.19 | protein n=1 Tax=Fibrocapsa japonica TaxID=94617 Re... | [more] |
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-06_008850.1 |
| Exons | 4 |
| Model size | 507 |
| Cds size | 507 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622930916.5104227-CDS-Ecto-sp9_F_contig8703:392..527 | 1622930916.5104227-CDS-Ecto-sp9_F_contig8703:392..527 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig8703 393..527 - |
| 1692278947.6434195-CDS-Ecto-sp9_F_contig8703:392..527 | 1692278947.6434195-CDS-Ecto-sp9_F_contig8703:392..527 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig8703 393..527 - |
| 1622930916.5338275-CDS-Ecto-sp9_F_contig8703:1032..1158 | 1622930916.5338275-CDS-Ecto-sp9_F_contig8703:1032..1158 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig8703 1033..1158 - |
| 1692278947.653227-CDS-Ecto-sp9_F_contig8703:1032..1158 | 1692278947.653227-CDS-Ecto-sp9_F_contig8703:1032..1158 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig8703 1033..1158 - |
| 1622930916.5570982-CDS-Ecto-sp9_F_contig8703:1499..1598 | 1622930916.5570982-CDS-Ecto-sp9_F_contig8703:1499..1598 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig8703 1500..1598 - |
| 1692278947.6655421-CDS-Ecto-sp9_F_contig8703:1499..1598 | 1692278947.6655421-CDS-Ecto-sp9_F_contig8703:1499..1598 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig8703 1500..1598 - |
| 1622930916.5731604-CDS-Ecto-sp9_F_contig8703:2934..3081 | 1622930916.5731604-CDS-Ecto-sp9_F_contig8703:2934..3081 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig8703 2935..3081 - |
| 1692278947.6806283-CDS-Ecto-sp9_F_contig8703:2934..3081 | 1692278947.6806283-CDS-Ecto-sp9_F_contig8703:2934..3081 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig8703 2935..3081 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig8703.16891.1 >prot_Ecto-sp9_F_contig8703.16891.1 ID=prot_Ecto-sp9_F_contig8703.16891.1|Name=mRNA_Ecto-sp9_F_contig8703.16891.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=169bp
MVGVLRVVSAAGDALVDIRPDWKSLDDASGATVGEVFRSSEVLQMYHLQA
TAQLYEQGGLNHDMSFFLTGVAFYSVESPDVKVSIAYHPTNMTISLLPVI
SEDGRELRWDHQAASVSYVMGVDQAYWNAGSYMGETTGAFFSYAVEFSLE
YHRLHPRYQPFSVYEDYPG back to topmRNA from alignment at Ecto-sp9_F_contig8703:393..3081- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp9_F_contig8703.16891.1 ID=mRNA_Ecto-sp9_F_contig8703.16891.1|Name=mRNA_Ecto-sp9_F_contig8703.16891.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2689bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8703:393..3081- (Ectocarpus species9 EcSCA_722f female)
ATGGTGGGAGTTCTACGGGTGGTGTCAGCAGCTGGGGATGCGTTGGTTGA
TATCCGGCCGGACTGGAAAAGCCTGGACGATGCCTCCGGAGCTACCGTTG
GGGAAGTCTTTCGAAGCAGCGAGGTTCTTCAAATGTACCATCTGCAGGTA
ATAATGCATGTGTATTACATACGCTGGTTGGGGTGTGATGTGGGATACAT
CAGGGTTTTTTCCCTCTGACTGTTTGGTTGCGTGTGCTGTGCAGGGATCG
CCTCGAAAAGGTTATGCGGACTGCTGTTTTCGTAAGGTGGAAGCATGACC
GAGATGGAAAACGGCAAGTGTGTGCGGTTCGAGACACGTCTGGTCTCTAC
AGTCACATACGGTACGCCGGTAGTTCCCACGTGTTCCACTAGTACTGTAG
CTGCTGCATGCCTATGGCACAAGACAACGCCTGCCTGCGTGACCAGAGGG
TGTGTTTTCGGGACACGTGCGGACGCTACCCTCAGAACAGCCAGAAGCGC
TTGTCACGTCGCAATCTACTACGCTGCCCGTGGCACAGCTCTGCACGTAC
ATACTGATTGTGGCACTGCACGTGGTGCAGGTGCAGGTGGTATGCATGTC
ATGCCGTAGCGTACATGGTTGGACACGCAGGTCCATTCATGATTCCCCCC
GCATTCCGCGCCTGTATTGTCAATTGTCAATATTATTTGCGTGGACGACT
TGTATTTGACAGTTGCAGCCTTGAGCGTACCTGGGCGATTGATTTGTTTC
AACAGGGCTGTGCTGCAGACAGGGATGATGTGACTGTTCTGCGCACCCAT
CTCCACGGCAGCAAGATTGGTATCGTATTTTCTGCGGTCAGTTTGACCGA
GCAACGCTCTCTCCCGCGGGCGGAAAGAACCCGACGTTTGTCCCAGACGC
AAAACTATAGTGGCAACCGGGTCCCAGGAGAATTCCTTACCGTCTTCAGG
AAAGAGACGTACACATATGAAGAAGCGCATGTTTATTGCAAGGCCGGTAT
GCGTACGTGAAATCAATTGTGAGACCCCCGGAGTTTTTTTATTCAAGTCA
AGGTTGATAATCAGCAGTGCGGGATGGACTTAGCTCTCCAAAAGTTGTGT
GGTTACCAGGTTTTGACTTGCGACAGAATTAAACAACACATAGCAGTGGC
GTCGTCGTCCTTTGGCTTCCAACCCTGCTTTGAATGGACGCGGAGCGAGA
GCGGGTGGGGGGGCAGGGAGCGGGTGAATGCTGCCCGTGTCTCGGTGCTC
TAGTTATCCCCTCCCTTCTCCTCGCTCGCTGTTATGGGCGTCAGAATCCT
CGTATTTTGGTTTTGAGAGAACAGCTGCAAAGGGAGGCTAGTGGATGGGG
CTTGTGTGGTGCAGACGTTAGCCCGACATGTATCACACACAGGCCTGTGA
ACATACGAAAACCAGTGACAAATACAATCAATATTATCGACACACCCCGG
CCGGCCTTTGTCTTCTCTTCGCCTGCTGGACAGGCCACTGCTCAGCTTTA
CGAGCAAGGAGGCCTTAACCATGACATGTCGTTCTTCCTGACGGGTGTGG
CGTTTTACAGCGTGGAGAGCCCCGACGTTAAGGTACGCTCGCCCCGAAGA
GAGGGAGACAGAGAGACAGAGACAGGCAGCACGCTCCTGCGGCAGCAAGC
CGGCAGGATATCTCAGCATAGCTATTATAGCTCTACGCCAATACTTGCGT
GATTCTTTGAACAGCTGGGCGAACTGCACCAAGGTTGCCTGATTTAGAGG
ACCGCCTACCGAGTGTCGTAGGGCGCACATTCTGTGCTCTCACGCAGGAC
TCAAACACCAAACAGCTCGTCTTTCAACTCGATTGGCATGCTCTCCGCGG
CCTGCGATGTAGACCGTCGGCCGATTCCCGCCCGCCCACCCGCCCTTGCC
GCACGTTGACACCGCATCTTCAGGTGTCTATTGCCTACCACCCTACCAAC
ATGACGATATCCTTGCTGCCCGTTATATCGGAGGATGGCCGGGAGTTGCG
GTGGGACCATCAGGCGGCGTCCGTGAGCTATGTGATGGGCGTTGACCAGG
TATGATGGGGTTATGCCGACCTCTTCCTGACCATGTCCTTCGGGCGTGTG
GCCCAAACGTCCGCGGTACGCGAAAGAGATGCCGCTGCTTTTCCGGCGCG
TATCAACGAAGTACATCGTTGGTCGAGCCCGTGTAGGCCCATGGTGGTGA
TGGAACAACGCCCCATGTGTTTGTTGTTTTTTTCTACTGGCAGAGTTAGT
CTACTTCCAGCACACCATGTTCCGTGCGCTGCTGTGCGACACCGTTTATG
TCAGCGGAGGTTTTGCACTTAAACTCTGTCTCCACTATTTTATGTGTGTC
GTTCTCTATTCACACTCACATTCACGTGTACACGCAAACCGTAAGGTTCG
AAAGAGAACAATCGCTCTCCGACCCGCAGTGACATCAATGATTTCACCCC
TCTCTGCCGCGCCTTGTTTTAACTTTGGCGCTGTTGGTGCTGCTGCTGCT
GCTGCTGCTGCTGCTGCTGCTGCTGCTGCCGCTGCTGCATACGCTATCGC
ACAGGCGTACTGGAATGCCGGCTCGTATATGGGGGAGACAACAGGCGCGT
TTTTCAGCTACGCTGTTGAGTTCAGCCTTGAGTACCACCGGCTGCACCCC
CGGTACCAGCCGTTCAGCGTTTACGAGGACTACCCAGGT back to topCoding sequence (CDS) from alignment at Ecto-sp9_F_contig8703:393..3081- >mRNA_Ecto-sp9_F_contig8703.16891.1 ID=mRNA_Ecto-sp9_F_contig8703.16891.1|Name=mRNA_Ecto-sp9_F_contig8703.16891.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1014bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8703:393..3081- (Ectocarpus species9 EcSCA_722f female)
ATGGTGGGAGTTCTACGGGTGGTGTCAGCAGCTGGGGATGCGTTGGTTGA
TATCCGGCCGGACTGGAAAAGCCTGGACGATGCCTCCGGAGCTACCGTTG
GGGAAGTCTTTCGAAGCAGCGAGGTTCTTCAAATGTACCATCTGCAGATG
GTGGGAGTTCTACGGGTGGTGTCAGCAGCTGGGGATGCGTTGGTTGATAT
CCGGCCGGACTGGAAAAGCCTGGACGATGCCTCCGGAGCTACCGTTGGGG
AAGTCTTTCGAAGCAGCGAGGTTCTTCAAATGTACCATCTGCAGGCCACT
GCTCAGCTTTACGAGCAAGGAGGCCTTAACCATGACATGTCGTTCTTCCT
GACGGGTGTGGCGTTTTACAGCGTGGAGAGCCCCGACGTTAAGGCCACTG
CTCAGCTTTACGAGCAAGGAGGCCTTAACCATGACATGTCGTTCTTCCTG
ACGGGTGTGGCGTTTTACAGCGTGGAGAGCCCCGACGTTAAGGTGTCTAT
TGCCTACCACCCTACCAACATGACGATATCCTTGCTGCCCGTTATATCGG
AGGATGGCCGGGAGTTGCGGTGGGACCATCAGGCGGCGTCCGTGAGCTAT
GTGATGGGCGTTGACCAGGTGTCTATTGCCTACCACCCTACCAACATGAC
GATATCCTTGCTGCCCGTTATATCGGAGGATGGCCGGGAGTTGCGGTGGG
ACCATCAGGCGGCGTCCGTGAGCTATGTGATGGGCGTTGACCAGGCGTAC
TGGAATGCCGGCTCGTATATGGGGGAGACAACAGGCGCGTTTTTCAGCTA
CGCTGTTGAGTTCAGCCTTGAGTACCACCGGCTGCACCCCCGGTACCAGC
CGTTCAGCGTTTACGAGGACTACCCAGGTGCGTACTGGAATGCCGGCTCG
TATATGGGGGAGACAACAGGCGCGTTTTTCAGCTACGCTGTTGAGTTCAG
CCTTGAGTACCACCGGCTGCACCCCCGGTACCAGCCGTTCAGCGTTTACG
AGGACTACCCAGGT back to top
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