mRNA_Ecto-sp9_F_contig8701.16889.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig8701.16889.1
Unique NamemRNA_Ecto-sp9_F_contig8701.16889.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig8701.16889.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK76_ECTSI)

HSP 1 Score: 139 bits (351), Expect = 4.470e-39
Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 2 
Query:   50 MPTAVIGSDCWTLRPGARTAMHDLLVTLVGNSVQCATMVAESILQETAKRVTRMTQIHIHRRNDYELHR 256
            MPTAV+GSDCWTLRPGARTAMHDLLVTLVGNSVQCATMVAESILQETAKRVTRMTQIHIHRRNDYELHR
Sbjct:    1 MPTAVVGSDCWTLRPGARTAMHDLLVTLVGNSVQCATMVAESILQETAKRVTRMTQIHIHRRNDYELHR 69
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BLAST of mRNA_Ecto-sp9_F_contig8701.16889.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCR7_9PHAE)

HSP 1 Score: 138 bits (348), Expect = 1.020e-36
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 2 
Query:   50 MPTAVIGSDCWTLRPGARTAMHDLLVTLVGNSVQCATMVAESILQETAKRVTRMTQIHIHRRNDYELH 253
            MPTAVIGSDCWTLRPGARTAMHDLLVTLVGNSVQCATMVAESILQETAKRVTRMTQIHIHRRNDYELH
Sbjct:    1 MPTAVIGSDCWTLRPGARTAMHDLLVTLVGNSVQCATMVAESILQETAKRVTRMTQIHIHRRNDYELH 68
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8701.16889.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized4.470e-3998.55protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.020e-36100.00protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8701contigEcto-sp9_F_contig8701:122..663 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size327
Cds size327
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930916.0420587-CDS-Ecto-sp9_F_contig8701:121..2931622930916.0420587-CDS-Ecto-sp9_F_contig8701:121..293Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8701 122..293 +
1692278947.5455422-CDS-Ecto-sp9_F_contig8701:121..2931692278947.5455422-CDS-Ecto-sp9_F_contig8701:121..293Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8701 122..293 +
1622930916.0697474-CDS-Ecto-sp9_F_contig8701:508..6631622930916.0697474-CDS-Ecto-sp9_F_contig8701:508..663Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8701 509..663 +
1692278947.5546668-CDS-Ecto-sp9_F_contig8701:508..6631692278947.5546668-CDS-Ecto-sp9_F_contig8701:508..663Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8701 509..663 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8701.16889.1prot_Ecto-sp9_F_contig8701.16889.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig8701 122..663 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig8701.16889.1

>prot_Ecto-sp9_F_contig8701.16889.1 ID=prot_Ecto-sp9_F_contig8701.16889.1|Name=mRNA_Ecto-sp9_F_contig8701.16889.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=109bp
QEQQRQESTLGGVGACDAYGSHRVGLLDATAGRPDGYARPPRDPRGQQRP
MRDDGSRVHLAGDGETSHPHDPDTHPPAERLRAAPARERGEPVADNSNSS
SWGRGGDR*
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mRNA from alignment at Ecto-sp9_F_contig8701:122..663+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig8701.16889.1 ID=mRNA_Ecto-sp9_F_contig8701.16889.1|Name=mRNA_Ecto-sp9_F_contig8701.16889.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=542bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8701:122..663+ (Ectocarpus species9 EcSCA_722f female)
CAGGAGCAACAACGGCAGGAATCGACCCTCGGTGGCGTCGGTGCTTGCGA
TGCCTACGGCAGTCATCGGGTCGGACTGCTGGACGCTACGGCCGGGCGCC
CGGACGGCTATGCACGACCTCCTCGTGACCCTCGTGGGCAACAGCGTCCA
ATGCGCGACGATGGTAGCAGAGGTAAACACATGTTGGCAACAAAAATACT
AAATATAAGGAAGCCATGGTTTGCTTGCTCTTGTAGAACATGTATGCAAT
GATGTGCGTGCTCTTTGTTGTAGGATATGCTGTAATTTGCTACTGCGGTG
AATGCGGTTTTCGGTTTTTCATCAAGATTTTTTGAATTGTTCTTGTCGTC
TGTTTTTTTTTGTGGATGTATGCGTGTTGTTGCCCAGTCCATCTTGCAGG
AGACGGCGAAACGAGTCACCCGCATGACCCAGATACACATCCACCGGCGG
AACGACTACGAGCTGCACCGGCACGAGAACGAGGAGAACCGGTCGCCGAC
AACAGCAACAGCAGCAGCTGGGGGAGGGGGGGGGACCGGTAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8701:122..663+

>mRNA_Ecto-sp9_F_contig8701.16889.1 ID=mRNA_Ecto-sp9_F_contig8701.16889.1|Name=mRNA_Ecto-sp9_F_contig8701.16889.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=654bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8701:122..663+ (Ectocarpus species9 EcSCA_722f female)
CAGGAGCAACAACGGCAGGAATCGACCCTCGGTGGCGTCGGTGCTTGCGA
TGCCTACGGCAGTCATCGGGTCGGACTGCTGGACGCTACGGCCGGGCGCC
CGGACGGCTATGCACGACCTCCTCGTGACCCTCGTGGGCAACAGCGTCCA
ATGCGCGACGATGGTAGCAGAGCAGGAGCAACAACGGCAGGAATCGACCC
TCGGTGGCGTCGGTGCTTGCGATGCCTACGGCAGTCATCGGGTCGGACTG
CTGGACGCTACGGCCGGGCGCCCGGACGGCTATGCACGACCTCCTCGTGA
CCCTCGTGGGCAACAGCGTCCAATGCGCGACGATGGTAGCAGAGTCCATC
TTGCAGGAGACGGCGAAACGAGTCACCCGCATGACCCAGATACACATCCA
CCGGCGGAACGACTACGAGCTGCACCGGCACGAGAACGAGGAGAACCGGT
CGCCGACAACAGCAACAGCAGCAGCTGGGGGAGGGGGGGGGACCGGTAGT
CCATCTTGCAGGAGACGGCGAAACGAGTCACCCGCATGACCCAGATACAC
ATCCACCGGCGGAACGACTACGAGCTGCACCGGCACGAGAACGAGGAGAA
CCGGTCGCCGACAACAGCAACAGCAGCAGCTGGGGGAGGGGGGGGGACCG
GTAG
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