mRNA_Ecto-sp9_F_contig8700.16888.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig8700.16888.1
Unique NamemRNA_Ecto-sp9_F_contig8700.16888.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig8700.16888.1 vs.
Match: Predicted (unusual protein kinase (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT20_ECTSI)

HSP 1 Score: 293 bits (749), Expect = 1.230e-96
Identity = 174/182 (95.60%), Postives = 175/182 (96.15%), Query Frame = 2 
Query:    2 QTLQFLLAEEARPLRAALVGEASNAADLVLRRGTRQAVVRAKDLLRPPPPXXXXXXXXXXXPFPVPESVVDGLSPKLTVEEDIFLASLEELAYALAGIEQGTVSDDPLATIRQLLQAGSDGSGGAGELVEFVRTLPGDSEKTEAIFDVGSEVVQNLADRASERFNGLLSGATGGGSGSDAGR 547
            QTLQFLLAEEARPLRAALVGEASNAADLVLRRGTRQAVVRAKDLLRPPPPXXXXXXXXXXXPFPVPESVVD LSPKLTVEEDIFLASLEELAYALAGIEQGTVSDDPLATIRQLLQAGSDGSGGAGELVEFVRTLPGDSEKTEAIFDVGSEVVQNLADRASERFNGLLSG +G     DAGR
Sbjct:  175 QTLQFLLAEEARPLRAALVGEASNAADLVLRRGTRQAVVRAKDLLRPPPPXXXXXXXXXXXPFPVPESVVDALSPKLTVEEDIFLASLEELAYALAGIEQGTVSDDPLATIRQLLQAGSDGSGGAGELVEFVRTLPGDSEKTEAIFDVGSEVVQNLADRASERFNGLLSGGSGXXXXRDAGR 356
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BLAST of mRNA_Ecto-sp9_F_contig8700.16888.1 vs.
Match: Protein (kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBP7_9PHAE)

HSP 1 Score: 289 bits (739), Expect = 2.230e-89
Identity = 169/173 (97.69%), Postives = 172/173 (99.42%), Query Frame = 2 
Query:    2 QTLQFLLAEEARPLRAALVGEASNAADLVLRRGTRQAVVRAKDLLRPPPPXXXXXXXXXXXPFPVPESVVDGLSPKLTVEEDIFLASLEELAYALAGIEQGTVSDDPLATIRQLLQAGSDGSGGAGELVEFVRTLPGDSEKTEAIFDVGSEVVQNLADRASERFNGLLSGATG 520
            QTLQFLLAEEARPLRAALVGEASNAADLVLRRGTRQAVVRAKDLLRPPPPXXXXXXXXXXXPFPVPESVVD LSPKLTVEEDIFLASLEELAYALAGIEQGTVSD+PLATIRQLLQAGSDGSGGAGELVEFVRTLPGDSEKTEAIFDVGSEVVQNLADRAS+RFNGLLSGA+G
Sbjct:  725 QTLQFLLAEEARPLRAALVGEASNAADLVLRRGTRQAVVRAKDLLRPPPPXXXXXXXXXXXPFPVPESVVDALSPKLTVEEDIFLASLEELAYALAGIEQGTVSDNPLATIRQLLQAGSDGSGGAGELVEFVRTLPGDSEKTEAIFDVGSEVVQNLADRASKRFNGLLSGASG 897
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8700.16888.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Predicted1.230e-9695.60unusual protein kinase (ISS) n=1 Tax=Ectocarpus si... [more]
Protein2.230e-8997.69kinase domain-containing protein n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8700contigEcto-sp9_F_contig8700:2819..5897 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size549
Cds size297
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8700.16888.1prot_Ecto-sp9_F_contig8700.16888.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig8700 4294..5897 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930915.8513496-UTR-Ecto-sp9_F_contig8700:2818..29231622930915.8513496-UTR-Ecto-sp9_F_contig8700:2818..2923Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8700 2819..2923 -
1692278947.4677558-UTR-Ecto-sp9_F_contig8700:2818..29231692278947.4677558-UTR-Ecto-sp9_F_contig8700:2818..2923Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8700 2819..2923 -
1622930915.8674605-UTR-Ecto-sp9_F_contig8700:3696..37581622930915.8674605-UTR-Ecto-sp9_F_contig8700:3696..3758Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8700 3697..3758 -
1692278947.4780211-UTR-Ecto-sp9_F_contig8700:3696..37581692278947.4780211-UTR-Ecto-sp9_F_contig8700:3696..3758Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8700 3697..3758 -
1622930915.8805356-UTR-Ecto-sp9_F_contig8700:4210..42931622930915.8805356-UTR-Ecto-sp9_F_contig8700:4210..4293Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8700 4211..4293 -
1692278947.4880133-UTR-Ecto-sp9_F_contig8700:4210..42931692278947.4880133-UTR-Ecto-sp9_F_contig8700:4210..4293Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8700 4211..4293 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930915.89528-CDS-Ecto-sp9_F_contig8700:4293..43461622930915.89528-CDS-Ecto-sp9_F_contig8700:4293..4346Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8700 4294..4346 -
1692278947.4998326-CDS-Ecto-sp9_F_contig8700:4293..43461692278947.4998326-CDS-Ecto-sp9_F_contig8700:4293..4346Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8700 4294..4346 -
1622930915.9111648-CDS-Ecto-sp9_F_contig8700:5069..52491622930915.9111648-CDS-Ecto-sp9_F_contig8700:5069..5249Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8700 5070..5249 -
1692278947.5090961-CDS-Ecto-sp9_F_contig8700:5069..52491692278947.5090961-CDS-Ecto-sp9_F_contig8700:5069..5249Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8700 5070..5249 -
1622930915.9246376-CDS-Ecto-sp9_F_contig8700:5833..58971622930915.9246376-CDS-Ecto-sp9_F_contig8700:5833..5897Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8700 5834..5897 -
1692278947.5179622-CDS-Ecto-sp9_F_contig8700:5833..58971692278947.5179622-CDS-Ecto-sp9_F_contig8700:5833..5897Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8700 5834..5897 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig8700.16888.1

>prot_Ecto-sp9_F_contig8700.16888.1 ID=prot_Ecto-sp9_F_contig8700.16888.1|Name=mRNA_Ecto-sp9_F_contig8700.16888.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=99bp
PDAAVPARGGGPAAQGGSRGRSVERGRPGAEEGHEAGGGESQGPPPPAPA
SSPLPAAAPFAAFPGAGVCGRRPQPQAHGGGGYFPREPGRVGVRVGGD*
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mRNA from alignment at Ecto-sp9_F_contig8700:2819..5897-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig8700.16888.1 ID=mRNA_Ecto-sp9_F_contig8700.16888.1|Name=mRNA_Ecto-sp9_F_contig8700.16888.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3079bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8700:2819..5897- (Ectocarpus species9 EcSCA_722f female)
CCAGACGCTGCAGTTCCTGCTCGCGGAGGAGGCCCGGCCGCTCAGGGCGG
CTCTCGTGGGAGAAGTGCGTTTTTTTTTTCTATTAAAGATGTGTGTGTGT
AGTTTTTTCTTTTTTTTTGTACGAAGTGTTCTGTACGTGGGTCTGTTGGG
AGAAGAGGGAGATGTTCGGATTCGTTTTCGGTTTTGTGCGCGCGTGTTTG
TCTTGGTTTTGTTTTGTTTCCCGTGGCGAATCGCCGTTCCTTCCGCTGCT
CCCGATCATACAGAAACTGCCGCACGTGCCAGCCCAACCACCATCCAGCC
TAGCGTGGCACGCGATCATTTAGATTGGCAAGGCGTTCATGCGTGGGAGG
GTCATGACAAGCAAATACCACGCTCCAACTCTTTGTAGGGATACGAGGTC
AATAGCCCAACAACTACGGCATGCACCCCTATGAGAGTACCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCGCCCCCCACCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCNNNNNNNNNNCCCCACCACCCGGCGCCCCCCCCCCGTGGGG
CGCCCCCCCCCCCCCCCCCCTCTCTTTTCGGAAGTGACCCCCCCCCCCTA
CCGCCTCCTCCGTCCCGCCAAATATGCCTCCCGCCCCACCGACGACAGGC
GTCGAACGCGGCCGACCTGGTGCTGAGGAGGGGCACGAGGCAGGCGGTGG
TGAGAGCCAAGGACCTCCTCCGCCCGCCCCCGCCTCCTCTCCCCTTCCTG
CCGCGGCTCCCTTCGCTGCCTTTCCCGGTGCCGGAGTCTGTGGTCGACGG
CCTCAGCCCCAAGCTCACGGTGGAGGAGGTGCGTGACAAAGGGTGGCCTT
AGAAGTCTTAAAGGGTCGTAAAGGACCGTTTTACGCACAGCGATCTTTGC
TTCCAATTTTTCCAAATTCCAAATCCGTAGACCGTTGAACCCTGATTTGC
GGCCGAGGAAAAGTTTTGGTTGGAAGTTTGGAATATTTGGAAACTGTTGG
CACCGAAAAGGTTGGGAACGAGTTCGGAAGTCGAAATTTGGAAATCGGGA
AATTTGGAAGCAAAATCGCTTGGTACAGAACGGCCCAAATACTAGGCCAC
ACATGAAAATCGAATTTTTGGGTAGGTGTGTGCCTGTGTTTTGGGTGTGT
TTGTTTATGCAGGTTTGCGCGTGTCCACTAATATTTCACCAACTGATATG
AGAGGCGATTTTTATGTAACCGTGTTTTGTGTTTTTGATGTTTGTGTGAG
AGTTTTATGTAGGTATGATTTGAGTGGTCGCCCGGTGGTTTCAAGTTGGT
GACCTCGCAGCCTCCTGACGTTAAGCCACATCCATTCATGCATGAGTGCG
AGTATTGACGCAGTCCCGCGAACTATGGGAGTTGCCTTCCTCGCATCATA
CTTCACACAGAACTGCGCAAATGGAATAGATTATGTCGTGCGTGGCGGAT
GTAGAGGATCCGAGTTCTCCACGATCGACGAGGGAAAGAAACCGCTGAAT
CCTTGTGACGATGAAATTGACCGTTTCTCTTTTTTCTTTTCTTTTTTTCA
GGATATTTTCCTCGCGAGCCTGGAAGAGTTGGCGTACGCGTTGGCGGGGA
TTGAACAGGGGACGGTAAGCGACGATCCCCTGGCGACGATACGACAGCTC
CTGCAGGCGGGAAGCGACGGAAGCGGCGGCGCGGGGGGTGAGAAATGGAC
AAGAGGAAAGGGGGCGGCGTGGGTGACCGGGGGGGGTTAGGTTAGTCGGC
GTAGGGAGGTGGTCACAGTCTTTACGTTATATATGGCCCCACGCATGCCT
GAAGGCCGGGAATGGGGCACACAGTTGCGAATTCCGCCCGGGCGTATGCT
ACCACACCTTGAACAAGTCGCCCCCAGCCGTACCCCGTCTGCCTGGCATT
TTTTTTGCGTTCTGTGTACGTGTGCAGATTTCATGTGAGCGTCAAGAAAG
CGACGGCAAGACTCACAGTTAACACACTAAAATATGGCCGCCCTTTCTTT
CCGCTCGTTCCCTCCGACACGACTAAGCGAACGAACGCACGGGCCCCCCT
CCCCTTCACCCCCCTCGCTCCACGATGTTCTCCTCTGCGGATCCCCCCCC
CCTGCCCGATTCCGCGTGGACCCTGTGTGGAACTCACAGAACTGGTGGAA
TTCGTGCGAACGCTTCCGGGGGACTCCGAAAAGACGGAGGCAATTTTTGA
TGTGAGTTTTCACGTTTTTTTGGGGGAGGCAGGAGGGGGGAGTGCGTACT
GTAGTACAGGTGTGTGTGAGTCATCCTCACTGGTTGTGTGCGTGTCGATG
TTTTGTGATGTTTTGTGTTGCGGCTTTTTTCGGTGTTTTTTTTTCTGGAT
GAACCTGCCGCTGGGTCACACTCGAGGGGGGAGGGGACTTGGAGGTGGGG
CTGGTAGGGGGGGGGGTGGTTGGTTGTCCCCCACCCCATGGCGATGCGTC
GTCATTCTCACGCCGTGGTGTTTACCCGAGTGACAAACGTGTTGACACTT
ATTCCGCCAATGAAAGTGCGTCGATTGGTTCTAGAGCAGGGGGGTGTACT
CGTGCGCTCTTCCGTCGCGGGTGGTACCACACCGGAGACTGGAGAAAATA
TACCGCGCGTCCACGGTGGAATAACAATAAACACAATGTGGGAGCTCTCG
TTTTTACTCGTCTTGTCCCCCCCACTTTTTTTGCGCCTCCCTGCTGATGT
TCCCCCCTTTGGAATGGCAAACCAACACTCGTCGTCAACAAGAATCGTCC
CTTTTCGTGCACTGTTTGAAGACAAACTGCTTGTGTTCCCCCTGCTCCTC
CGTACCTCTACATGCGGCATTTCCGTCGCCCCCGGTGCCTTCACGCGCAA
GCTCAACGTTCTCAACCCCGTCGTGTTGCTTCGTGACAAAAATCAATCAC
GCTTAACCCTCGATCTCCTCCCCCGCGCCGACTTTGCCACACGATTTGTA
CGGTATTTTTTTGCGCCCAATCAGGTTGGGTCGGAGGTCGTGCAGAACCT
GGCTGACAGAGCCAGCGAGAGATTCAACGGTCTGCTGTCTGGTGCAACCG
GCGGCGGCAGCGGCAGCGACGCTGGGCGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8700:2819..5897-

>mRNA_Ecto-sp9_F_contig8700.16888.1 ID=mRNA_Ecto-sp9_F_contig8700.16888.1|Name=mRNA_Ecto-sp9_F_contig8700.16888.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=594bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8700:2819..5897- (Ectocarpus species9 EcSCA_722f female)
CCAGACGCTGCAGTTCCTGCTCGCGGAGGAGGCCCGGCCGCTCAGGGCGG
CTCTCGTGGGAGAACCAGACGCTGCAGTTCCTGCTCGCGGAGGAGGCCCG
GCCGCTCAGGGCGGCTCTCGTGGGAGAAGCGTCGAACGCGGCCGACCTGG
TGCTGAGGAGGGGCACGAGGCAGGCGGTGGTGAGAGCCAAGGACCTCCTC
CGCCCGCCCCCGCCTCCTCTCCCCTTCCTGCCGCGGCTCCCTTCGCTGCC
TTTCCCGGTGCCGGAGTCTGTGGTCGACGGCCTCAGCCCCAAGCTCACGG
TGGAGGAGGCGTCGAACGCGGCCGACCTGGTGCTGAGGAGGGGCACGAGG
CAGGCGGTGGTGAGAGCCAAGGACCTCCTCCGCCCGCCCCCGCCTCCTCT
CCCCTTCCTGCCGCGGCTCCCTTCGCTGCCTTTCCCGGTGCCGGAGTCTG
TGGTCGACGGCCTCAGCCCCAAGCTCACGGTGGAGGAGGATATTTTCCTC
GCGAGCCTGGAAGAGTTGGCGTACGCGTTGGCGGGGATTGAGATATTTTC
CTCGCGAGCCTGGAAGAGTTGGCGTACGCGTTGGCGGGGATTGA
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