mRNA_Ecto-sp9_F_contig870.16885.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig870.16885.1
Unique NamemRNA_Ecto-sp9_F_contig870.16885.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig870.16885.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRW2_ECTSI)

HSP 1 Score: 127 bits (319), Expect = 2.970e-35
Identity = 67/90 (74.44%), Postives = 72/90 (80.00%), Query Frame = 3 
Query:   45 LRIRAEGATTGNVRWLNRPFRPGSERHFADDPSCGHLRNAGVSRNSEARRRRDGGLAAHPRESNTNALVERVRRLPLESEIFAAESIVGI 314
            +RIRA+GAT+GNVRWL+RP RPGSE   ADDPSCG LR A VS+N EARRRRDGGLA HPRE      VE VRRL LESEIFAA SIVGI
Sbjct:   16 VRIRADGATSGNVRWLSRPLRPGSEPQLADDPSCGDLRTASVSQNPEARRRRDGGLAVHPRE------VEPVRRLALESEIFAAGSIVGI 99
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig870.16885.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized2.970e-3574.44protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig870contigEcto-sp9_F_contig870:11348..13710 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size399
Cds size399
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig870.16885.1prot_Ecto-sp9_F_contig870.16885.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig870 11348..13710 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930915.391878-CDS-Ecto-sp9_F_contig870:11347..115161622930915.391878-CDS-Ecto-sp9_F_contig870:11347..11516Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig870 11348..11516 -
1692278947.2419453-CDS-Ecto-sp9_F_contig870:11347..115161692278947.2419453-CDS-Ecto-sp9_F_contig870:11347..11516Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig870 11348..11516 -
1622930915.4139566-CDS-Ecto-sp9_F_contig870:11654..117021622930915.4139566-CDS-Ecto-sp9_F_contig870:11654..11702Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig870 11655..11702 -
1692278947.2526164-CDS-Ecto-sp9_F_contig870:11654..117021692278947.2526164-CDS-Ecto-sp9_F_contig870:11654..11702Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig870 11655..11702 -
1622930915.4323692-CDS-Ecto-sp9_F_contig870:13094..131661622930915.4323692-CDS-Ecto-sp9_F_contig870:13094..13166Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig870 13095..13166 -
1692278947.2692544-CDS-Ecto-sp9_F_contig870:13094..131661692278947.2692544-CDS-Ecto-sp9_F_contig870:13094..13166Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig870 13095..13166 -
1622930915.4526002-CDS-Ecto-sp9_F_contig870:13600..137101622930915.4526002-CDS-Ecto-sp9_F_contig870:13600..13710Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig870 13601..13710 -
1692278947.2777753-CDS-Ecto-sp9_F_contig870:13600..137101692278947.2777753-CDS-Ecto-sp9_F_contig870:13600..13710Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig870 13601..13710 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig870.16885.1

>prot_Ecto-sp9_F_contig870.16885.1 ID=prot_Ecto-sp9_F_contig870.16885.1|Name=mRNA_Ecto-sp9_F_contig870.16885.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=133bp
MVLNWCPRIFRQLQNYGSGLKALPLGTFDGLIDLSGLDLSGTSLTTLPAD
ISATLVSLEILRLAGDGMEGLQRIPESQIQTPWWNGCVDCHWKARFSPRK
ASWVLLFEASGYSVAKNLYYIFTGVSPFSFPV*
back to top

mRNA from alignment at Ecto-sp9_F_contig870:11348..13710-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig870.16885.1 ID=mRNA_Ecto-sp9_F_contig870.16885.1|Name=mRNA_Ecto-sp9_F_contig870.16885.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2363bp|location=Sequence derived from alignment at Ecto-sp9_F_contig870:11348..13710- (Ectocarpus species9 EcSCA_722f female)
ATGGTGCTGAATTGGTGCCCCCGCATTTTCCGGCAGTTGCAGAACTACGG
ATCCGGGCTGAAGGCGCTACCACTGGGAACGTTCGATGGCTTAATCGACC
TTTCAGGCCTGTGAGTGTAATGGAGTTGGTTGTGCAAGGGTGGCATCGAA
AATTCCGGGCGTTTGGTTGGCGCGTAAGCGCTCAAAACGCCTCAATCAAA
ACGCTTGTGCACCAGATTCCACCGAAGCTTCACCACGTCCAGACCATGTT
GGTCGGTGGGCGTGAATGTTTTGTAAATTTTCGTTGCCTGAGGTGCCATG
CGAATCGGCGAATCATCAGCACCACTCGTCTTGAAAATGGACTCGCTGCC
GCATGAGTGCAACATGTGTTTGGATGTTGATGCTCACGGGGGACGACCTG
CCATGGTCATTTCGCGGTCCCTTTTGTAGGGAGGTCCGGTCAGTACCGTA
TTGTGATGCCTTGCGAGCCAACCCTACCGACCTAGACTCCCACAACATTT
GCATGATATGTCATCGTCCCCGTGTGTTTCATCAATTTTGGCAGGGATCT
GAGCGGCACTTCGCTGACGACCCTTCCTGCGGACATCTCCGCAACGCTGG
TGTCTCTCGAAATTCTGTGAGAAAGCGCATCGCCTTGATGTAGGTTGCTT
TTGGTCGAAGGAATGTGAACTCGCACCGGGGTCATACAGAGAGAAGAACG
CATGCATACACTCTGATTGGCGCAGGGACAGATTGACCACGAATGGGCCT
CACTCGATCGTGGTAAACAGCCGTCCTTGGGAGAATGCGCATACGAACAA
CTGCAAGAGATGCCCAACACCGTTTGACTATTCCCAAGAGTCATCGTCTT
AAGAAGCAGTTACCCATTTCAGAATTGGCTCCCACAAGATCGCTGAGAGC
TTTCGGGACATTCGTCCCATTCTGTCTGGACTTGAGGTTTGGACTCATGA
GATGAGGTCACGCAGCAGGAAGGCCAATCACGATGTTGTTATCTGCGTTC
CTCAACCTTCCTTCTGTGTTGCTTGCATTAAAAATTTGATCGCGAGAACG
AGTCAGCCGTCCCTTTCCGTTGTCGACCGTGATTTCAAACACGTTGCTCA
TTGTAGGGGGAATATTGTGAGATTGAATCTCAATTCGTTTGACCACGGTG
AGACTCGAATCCACGTCTCAGACAAAAGAGGATGCAGTGTTACGGTCTGC
CAGTTCCTTTTTGAGCTGTTGATGTTGTGCATTGCGCGACTACTTGCTGC
TTGTTTGCGGGCAACCGAAATACAGTTCTTCTATGACCACGTATTCTGTG
GTGCCTTGAAAAGAAAACGAGAGGGGCAAATAGTGACAGAACACGGTGCC
TCCCGTTTTGCAAGGGGCACACAAAGGCATCAATCGAGTCGGTGGTTGGA
CCCGAACGCTAGCGCTGGATGGCGGAAACCACCGTAGACTGTACAGTTTT
CTCGAGACTCATGCTGTGAGCACAGTCACCCAGTTTTAACGTTCATGGCC
AGAGGGAGGTCGATTCACCGAACGAGGAGTTGAAGATGCCAAGTGGAGTC
GGTGTGTAATAGAGTTGACTCTCACGTTTCTGGTCCACGGTTGGAGCTGG
GGTCAACAGTCTATGCACGTTTGGTTTATTGTGGATTTTGGATCCAGGAG
CACGGCTTATTTCCCTCAGCATGACAGGGCGTTTGAGACCCCGGTGAAGC
CAAAAGGGGTGTGCGGACTTACTTCCTTTGCTGCCACAGATGACGGTGAA
CGTTGCGGCATAGAAAACGGTGAAGGTTGACTCCTAACCCCCGGTCGCGT
TGTCCTCCGCGTGAGAAGAATAGACGCCAATATCTCGCGAGAGCCGCCGC
CGTAAACCATGCGAGATGATTTTAGCCGATCAGCCTGGCGGACCTTCGGA
ATCCACACGAGCTTTCGAATGTACCTTTTTCGGCCAGCCGTTCGTTGGCT
TCTTTTGCTCAATCTGCTCTCCTCTTATCGTCGTTTTCCCCTAACCTTCT
TTTTTCAGGAGGCTCGCAGGCGACGGGATGGAGGGCTTGCAGCGCATCCC
CGAGAGGTGAGACGGAAAAGGGACCGACGTCTCGCTTTGGACACTCGAGG
ATGGCGGTAACGAATATCACGACAAAGGGGTGTCAGAAATGACCCGCCCT
CTATGGAACTGATGTATCCTAGGGTGCCACCAATTGCGCGACAGTCAAAT
ACAAACGCCCTGGTGGAACGGGTGCGTCGACTGCCACTGGAAAGCGAGAT
TTTCGCCGCGGAAAGCATCGTGGGTATTGCTTTTTGAGGCTTCTGGATAT
TCTGTGGCGAAGAACCTTTACTATATCTTCACTGGCGTCTCTCCCTTTTC
CTTTCCCGTGTAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig870:11348..13710-

>mRNA_Ecto-sp9_F_contig870.16885.1 ID=mRNA_Ecto-sp9_F_contig870.16885.1|Name=mRNA_Ecto-sp9_F_contig870.16885.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=798bp|location=Sequence derived from alignment at Ecto-sp9_F_contig870:11348..13710- (Ectocarpus species9 EcSCA_722f female)
ATGGTGCTGAATTGGTGCCCCCGCATTTTCCGGCAGTTGCAGAACTACGG
ATCCGGGCTGAAGGCGCTACCACTGGGAACGTTCGATGGCTTAATCGACC
TTTCAGGCCTATGGTGCTGAATTGGTGCCCCCGCATTTTCCGGCAGTTGC
AGAACTACGGATCCGGGCTGAAGGCGCTACCACTGGGAACGTTCGATGGC
TTAATCGACCTTTCAGGCCTGGATCTGAGCGGCACTTCGCTGACGACCCT
TCCTGCGGACATCTCCGCAACGCTGGTGTCTCTCGAAATTCTGGATCTGA
GCGGCACTTCGCTGACGACCCTTCCTGCGGACATCTCCGCAACGCTGGTG
TCTCTCGAAATTCTGAGGCTCGCAGGCGACGGGATGGAGGGCTTGCAGCG
CATCCCCGAGAGGAGGCTCGCAGGCGACGGGATGGAGGGCTTGCAGCGCA
TCCCCGAGAGTCAAATACAAACGCCCTGGTGGAACGGGTGCGTCGACTGC
CACTGGAAAGCGAGATTTTCGCCGCGGAAAGCATCGTGGGTATTGCTTTT
TGAGGCTTCTGGATATTCTGTGGCGAAGAACCTTTACTATATCTTCACTG
GCGTCTCTCCCTTTTCCTTTCCCGTGTAATCAAATACAAACGCCCTGGTG
GAACGGGTGCGTCGACTGCCACTGGAAAGCGAGATTTTCGCCGCGGAAAG
CATCGTGGGTATTGCTTTTTGAGGCTTCTGGATATTCTGTGGCGAAGAAC
CTTTACTATATCTTCACTGGCGTCTCTCCCTTTTCCTTTCCCGTGTAA
back to top