mRNA_Ecto-sp9_F_contig87.16879.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig87.16879.1
Unique NamemRNA_Ecto-sp9_F_contig87.16879.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig87.16879.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMV5_ECTSI)

HSP 1 Score: 462 bits (1188), Expect = 1.070e-161
Identity = 264/301 (87.71%), Postives = 268/301 (89.04%), Query Frame = 2 
Query:   77 MASTTRKLYLVAMVICATSLRCDAFSTTSSCSSGRVADQHVMSNSPTTPRTGRGRCGSSIEMKGRNEDGRKRRISSSSSGSVNRGGFVRAAAAAALTLTVAGHRTTSPARAVGVQPGEXXXXXXXXLLLVPALRAKLAVQSVLKLMKDPEKWDEAREALKSPPLAPADFKECFRTYSDADPEQHLAFDLYRIQAQDALKAVSELLAYLASEKNKGSKIDREDVEDLEEAGRSVLQGIDDFLALAPREDVLMVAKNTADQARTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFVAGAWVGK 979
            MAS TRKLYLVAM+ICATSLRCDAFSTTSSCSS RVADQH+MSNSPTT RTGRGRCGSS+EMKGRNEDG+KRRISSSSSGSVNRGGFVRAAAAAALTLTVAGHRTTSPARAVGVQPGEXXXXXXXXLLLVPALRAKLAVQSVLKLMKDPEKW EAREALKSPPLAPADFKECFRTYSDADPEQHLAFDLYRIQAQDALKAVSELLAYLASEKNKGSKIDREDVEDLEEAGRSVLQGIDDFLALAPREDVLMVAKNTADQART                             AFVAGAWVGK
Sbjct:    1 MASATRKLYLVAMMICATSLRCDAFSTTSSCSSSRVADQHIMSNSPTTRRTGRGRCGSSMEMKGRNEDGQKRRISSSSSGSVNRGGFVRAAAAAALTLTVAGHRTTSPARAVGVQPGEXXXXXXXXLLLVPALRAKLAVQSVLKLMKDPEKWGEAREALKSPPLAPADFKECFRTYSDADPEQHLAFDLYRIQAQDALKAVSELLAYLASEKNKGSKIDREDVEDLEEAGRSVLQGIDDFLALAPREDVLMVAKNTADQARTAQTARPKSTDAPAALGGGRELEGAVIGEGAFVAGAWVGK 301
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BLAST of mRNA_Ecto-sp9_F_contig87.16879.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNZ8_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 1.200e-26
Identity = 65/181 (35.91%), Postives = 107/181 (59.12%), Query Frame = 2 
Query:  317 SVNRGGFVRAAAAAALTLTVAGHRTTSPARAVGVQPGEXXXXXXXXLLLVPALRAKLAVQSVLKLMKDPEKWDEAREALKSPPLAPADFKECFRTYSDADPEQHLAFDLYRIQAQDALKAVSELLAYLASEKNKGSKIDREDVEDLEEAGRSVLQGIDDFLALAPREDVLMVAKNTADQAR 859
            S++R   VR  ++  L  + A     +PA A+  Q            LL+P ++ + A   VL L+++P  W+EAR  L+SPPL+  DF +    YSD++ E+H+  DLYR Q   ++KA+ E++++   ++  G K+ +EDV+D+ ++GR++   +DDFLALAP ED+ +V    AD AR
Sbjct:   55 SMSRASVVRLVSSTLLIGSAACGGLAAPASALDPQRDRRTAVPPPRPLLLPVVKLRAATAKVLDLLEEPSGWEEARSLLRSPPLSNPDFAKILDRYSDSNWEKHILGDLYRNQGLASIKALDEVMSFALQQQEDGVKVSQEDVDDVRDSGRALAASLDDFLALAPPEDLRLVKDLVADPAR 235
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig87.16879.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.070e-16187.71protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMV5... [more]
Uncharacterized1.200e-2635.91protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNZ8... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig87contigEcto-sp9_F_contig87:11228..14335 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-02_003770.1
Exons3
Model size982
Cds size906
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig87.16879.1prot_Ecto-sp9_F_contig87.16879.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig87 11228..14259 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930913.8625872-CDS-Ecto-sp9_F_contig87:11227..115361622930913.8625872-CDS-Ecto-sp9_F_contig87:11227..11536Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig87 11228..11536 -
1692278946.3783863-CDS-Ecto-sp9_F_contig87:11227..115361692278946.3783863-CDS-Ecto-sp9_F_contig87:11227..11536Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig87 11228..11536 -
1622930913.8799047-CDS-Ecto-sp9_F_contig87:12716..129051622930913.8799047-CDS-Ecto-sp9_F_contig87:12716..12905Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig87 12717..12905 -
1692278946.393673-CDS-Ecto-sp9_F_contig87:12716..129051692278946.393673-CDS-Ecto-sp9_F_contig87:12716..12905Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig87 12717..12905 -
1622930913.9032311-CDS-Ecto-sp9_F_contig87:13851..142591622930913.9032311-CDS-Ecto-sp9_F_contig87:13851..14259Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig87 13852..14259 -
1692278946.406324-CDS-Ecto-sp9_F_contig87:13851..142591692278946.406324-CDS-Ecto-sp9_F_contig87:13851..14259Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig87 13852..14259 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930913.924949-UTR-Ecto-sp9_F_contig87:14259..143351622930913.924949-UTR-Ecto-sp9_F_contig87:14259..14335Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig87 14260..14335 -
1692278946.4215872-UTR-Ecto-sp9_F_contig87:14259..143351692278946.4215872-UTR-Ecto-sp9_F_contig87:14259..14335Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig87 14260..14335 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig87.16879.1

>prot_Ecto-sp9_F_contig87.16879.1 ID=prot_Ecto-sp9_F_contig87.16879.1|Name=mRNA_Ecto-sp9_F_contig87.16879.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=302bp
MASTTRKLYLVAMVICATSLRCDAFSTTSSCSSGRVADQHVMSNSPTTPR
TGRGRCGSSIEMKGRNEDGRKRRISSSSSGSVNRGGFVRAAAAAALTLTV
AGHRTTSPARAVGVQPGERTTAPPNALLLVPALRAKLAVQSVLKLMKDPE
KWDEAREALKSPPLAPADFKECFRTYSDADPEQHLAFDLYRIQAQDALKA
VSELLAYLASEKNKGSKIDREDVEDLEEAGRSVLQGIDDFLALAPREDVL
MVAKNTADQARTAQTARPKSTGAPAALGGGRELEGAVVGEGAFVAGAWVG
K*
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mRNA from alignment at Ecto-sp9_F_contig87:11228..14335-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig87.16879.1 ID=mRNA_Ecto-sp9_F_contig87.16879.1|Name=mRNA_Ecto-sp9_F_contig87.16879.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3108bp|location=Sequence derived from alignment at Ecto-sp9_F_contig87:11228..14335- (Ectocarpus species9 EcSCA_722f female)
GCCCTCTGTCTCTGCTCTAGGGTTGCCAACGTGAGGCACCAGCAGGTGTG
AAGCGTTTCGACCAGGCTGCATCACGATGGCATCCACCACTAGAAAGCTT
TATCTGGTAGCGATGGTGATCTGCGCGACGTCGTTGCGGTGTGACGCGTT
CTCTACAACAAGCTCGTGCAGCAGTGGCAGAGTCGCCGACCAGCACGTCA
TGTCGAACAGCCCTACGACTCCGAGGACGGGCCGAGGGCGCTGCGGAAGC
TCAATCGAGATGAAGGGAAGGAACGAAGACGGACGGAAACGAAGAATAAG
CAGCAGCAGCAGTGGCAGCGTGAACCGGGGTGGCTTCGTGCGAGCTGCAG
CCGCGGCAGCGCTCACTCTAACCGTTGCCGGGCATCGAACGACGTCTCCC
GCACGGGCCGTTGGCGTTCAGCCCGGAGAGAGAACGACCGCTCCTCCCAA
CGCGTTGCTCCTTGTTCCTGCTCTTCGCGCGAAGGTGTGTGGACCCAAGA
GTTATCTAGCTGTTGCGAGGGAGCAGATCAACAGCAAGAACGCAAAGGTA
TCGCTGGAAGCTGCGAAACACATGTTTCTGACTAGGCACACACTGCGACG
TACTTGACGGCGGTTGCCCGAGACCGTATCCTGCATCAGTCCACTAGCTG
GTGTCCACTGTTCTCTGCCGGTTGTAGATACTGCGTTTCGCGCATCGAGA
GTGCATTTTACTAACACTTTACATAGCACCGTCGTGATTCCAGCAGTCCC
TTGTAATAACCATTAATTCATCGCCGAAACCTACTCTACCTTGCAGAAGT
ACACCACAATCCACCAATAAATACGACGAGGTGCCGAAGAGGGACATGCT
AGAGTCCTCACATTGACGAGATTGTTCCGGCCGGCGTCGTGTCCTTAACT
ACGTGGACGTTCCTACCCACCCTTTGAGTCCCGTTTTCGGTGGATCCTCG
ATCTGAAACCTCGACTTGGTCTGCGGGAGTGCTGGTGATATTTGTCGTGG
TGAAATGACCGAGACTGGAAACCCGCGACTCTAGGCGTTTTCCCTGATTT
CTGCATCCTCCGGGGTGCAACCTGGCTCTGCTTCATAGTTATTCAAGCTG
TTGGTTGATTCTACTGGGGTGTAGTGCACGAACTCAGGGGTTATGACAAA
ACTATCAACCCAAGATAGCTGCCCCCCGCGTGCTCTCCTCCCGCGTTCAA
CCTTCCCCCGGGTCTACAGGACTGCCTACAGTACGCAAAGCAAGTTTATT
ACGACACAGGGGGCACGCAGACCCTACAACCCTAACCCTAACTTAGCCGA
TTATATACTTTATCCAGCATGTTTGCTTGCTTAACCTGCGTAGACTACCG
CTTCTACCTGTGTACCAACCACCCCGTGCAACGCCTTTCGGATATGACGC
TCGCGCATATCTACGAATAACATTTTCCAGCTCGCTGTCCAGAGCGTGCT
GAAGTTGATGAAGGACCCAGAGAAGTGGGACGAGGCTCGCGAGGCCCTCA
AGTCGCCCCCGCTAGCCCCAGCCGACTTCAAGGAGTGCTTCCGGACGTAC
AGCGACGCGGATCCCGAGCAACACTTGGCGTTCGACCTCTACCGCATACA
GGCGCAAGACGCCCTCAAGGTGGATGATGACGTAGCTTCTATACGATGTA
CGGCAGCCTTTCCTGCCAGCGCAACCCGTTGGCAGTAAAGTAGGCGCGGG
GGCTAATTAACCAAGGCGCGGAAGGACTGCCCCCGTCCCGTGTGCGATCC
TCCTGAGAAAAATACGAATCTCAAGCAAGCGCTAGACTAGCAAATGTTTT
TGACGCGCTGACAGCTTGAACCGCACATTTGCAATCGCTTCGTGTCTGCA
AACGAATTGCAGCCGCGCGATAAGTAGGAAACACACGATCAGTCCTTCAC
GTACTGCAGCTGTCACGACGACCAAGCAACCTCTCGATCCACCTGTTGAA
TGCTGCCGTTCTTGTAGGCATAGGCGGTTCTGAAATCTGACGCAACGACG
CCAGCCGGTGGCGCGCGTTACGTACGTTCGTCATCCCTGCTCGGTCATGT
AGAGCACCTGTTTTCGGCGTACGCTTTACAGCACTCCCTCGCGCGAAGGA
TATGACTGTTTGGAGTATGGTGGCGGAATGCAGACCTCCTCAGCTGCTCA
TTAGTGTCAGAAAACAGTTTTTTATTTTAAACTGCGAGTGAGTGTCGAAA
AGCGCATGCCGTACATCAACGGCTAGCTGCTCTATTTGAGCGGGCAACGG
ATGTTCCCACGTAGCGTCCTACGCTGCTGGCACAGTGGCGTGTAGATGTG
GTTTGTGTCGACTTCGGAACCGAGCAATATCAAGACGAATCGGTGTTGTT
GTTGTAGAATTTCGGGCATTCAAAAAGCACCGTCAGACGTCCATCGCCGA
ACGCCTCGGCCCCGGCCAGCAAAAAGCGTTTCTGTTGATGTTGTGCACGA
TGAGCGTCGTTGTGTTACACTGCGCCACAACAACATGGAATGGTGTGTTG
CATGCAATTGCTGAAATACAGCCTAGCCACCGAGTCCGAGGCGGGTGCCG
CAACTCACAGGCGTTTTTGTTGACCTACTGAACGGGCGCATCACCCCCTC
TGTGGGCTCCGGCCTCTCTTACCGTACTTAACGGGCGCATCGCTCCCTCT
TTGGACTCCAAGGCGTTGGAGGGGGAGAGAAGACAAATTGGCAGCTCCTG
GCTCACCTTTTTTTTTTTGCCTTTGTTGCGTTGTTCTTTTGTTTCTGGCA
ACAACGAAACACGCGTTGGTTTCTTGCAACATATCACGCCAACCCCCAGG
CGGTCTCCGAGCTGCTGGCGTACCTAGCGTCCGAGAAGAACAAGGGCTCC
AAGATAGACCGTGAAGACGTCGAAGACCTCGAGGAGGCGGGCCGCTCGGT
GCTGCAGGGCATAGACGATTTCCTGGCCCTCGCCCCTCGCGAAGACGTCT
TGATGGTGGCGAAAAACACCGCTGACCAGGCGCGCACCGCCCAGACGGCC
AGGCCAAAGAGCACGGGGGCACCGGCGGCGTTGGGGGGGGGTCGGGAGCT
GGAAGGCGCCGTTGTCGGGGAGGGGGCGTTTGTCGCGGGCGCCTGGGTGG
GGAAGTAA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig87:11228..14335-

>mRNA_Ecto-sp9_F_contig87.16879.1 ID=mRNA_Ecto-sp9_F_contig87.16879.1|Name=mRNA_Ecto-sp9_F_contig87.16879.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1812bp|location=Sequence derived from alignment at Ecto-sp9_F_contig87:11228..14335- (Ectocarpus species9 EcSCA_722f female)
ATGGCATCCACCACTAGAAAGCTTTATCTGGTAGCGATGGTGATCTGCGC
GACGTCGTTGCGGTGTGACGCGTTCTCTACAACAAGCTCGTGCAGCAGTG
GCAGAGTCGCCGACCAGCACGTCATGTCGAACAGCCCTACGACTCCGAGG
ACGGGCCGAGGGCGCTGCGGAAGCTCAATCGAGATGAAGGGAAGGAACGA
AGACGGACGGAAACGAAGAATAAGCAGCAGCAGCAGTGGCAGCGTGAACC
GGGGTGGCTTCGTGCGAGCTGCAGCCGCGGCAGCGCTCACTCTAACCGTT
GCCGGGCATCGAACGACGTCTCCCGCACGGGCCGTTGGCGTTCAGCCCGG
AGAGAGAACGACCGCTCCTCCCAACGCGTTGCTCCTTGTTCCTGCTCTTC
GCGCGAAGATGGCATCCACCACTAGAAAGCTTTATCTGGTAGCGATGGTG
ATCTGCGCGACGTCGTTGCGGTGTGACGCGTTCTCTACAACAAGCTCGTG
CAGCAGTGGCAGAGTCGCCGACCAGCACGTCATGTCGAACAGCCCTACGA
CTCCGAGGACGGGCCGAGGGCGCTGCGGAAGCTCAATCGAGATGAAGGGA
AGGAACGAAGACGGACGGAAACGAAGAATAAGCAGCAGCAGCAGTGGCAG
CGTGAACCGGGGTGGCTTCGTGCGAGCTGCAGCCGCGGCAGCGCTCACTC
TAACCGTTGCCGGGCATCGAACGACGTCTCCCGCACGGGCCGTTGGCGTT
CAGCCCGGAGAGAGAACGACCGCTCCTCCCAACGCGTTGCTCCTTGTTCC
TGCTCTTCGCGCGAAGCTCGCTGTCCAGAGCGTGCTGAAGTTGATGAAGG
ACCCAGAGAAGTGGGACGAGGCTCGCGAGGCCCTCAAGTCGCCCCCGCTA
GCCCCAGCCGACTTCAAGGAGTGCTTCCGGACGTACAGCGACGCGGATCC
CGAGCAACACTTGGCGTTCGACCTCTACCGCATACAGGCGCAAGACGCCC
TCAAGCTCGCTGTCCAGAGCGTGCTGAAGTTGATGAAGGACCCAGAGAAG
TGGGACGAGGCTCGCGAGGCCCTCAAGTCGCCCCCGCTAGCCCCAGCCGA
CTTCAAGGAGTGCTTCCGGACGTACAGCGACGCGGATCCCGAGCAACACT
TGGCGTTCGACCTCTACCGCATACAGGCGCAAGACGCCCTCAAGGCGGTC
TCCGAGCTGCTGGCGTACCTAGCGTCCGAGAAGAACAAGGGCTCCAAGAT
AGACCGTGAAGACGTCGAAGACCTCGAGGAGGCGGGCCGCTCGGTGCTGC
AGGGCATAGACGATTTCCTGGCCCTCGCCCCTCGCGAAGACGTCTTGATG
GTGGCGAAAAACACCGCTGACCAGGCGCGCACCGCCCAGACGGCCAGGCC
AAAGAGCACGGGGGCACCGGCGGCGTTGGGGGGGGGTCGGGAGCTGGAAG
GCGCCGTTGTCGGGGAGGGGGCGTTTGTCGCGGGCGCCTGGGTGGGGAAG
TAAGCGGTCTCCGAGCTGCTGGCGTACCTAGCGTCCGAGAAGAACAAGGG
CTCCAAGATAGACCGTGAAGACGTCGAAGACCTCGAGGAGGCGGGCCGCT
CGGTGCTGCAGGGCATAGACGATTTCCTGGCCCTCGCCCCTCGCGAAGAC
GTCTTGATGGTGGCGAAAAACACCGCTGACCAGGCGCGCACCGCCCAGAC
GGCCAGGCCAAAGAGCACGGGGGCACCGGCGGCGTTGGGGGGGGGTCGGG
AGCTGGAAGGCGCCGTTGTCGGGGAGGGGGCGTTTGTCGCGGGCGCCTGG
GTGGGGAAGTAA
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