mRNA_Ecto-sp9_F_contig87.16877.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig87.16877.1
Unique NamemRNA_Ecto-sp9_F_contig87.16877.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig87.16877.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHB3_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 5.620e-19
Identity = 47/49 (95.92%), Postives = 47/49 (95.92%), Query Frame = 1 
Query:   70 MWWGFKDGAKDGNTSEPRAAAGAAPSQQAAAPSPRGSLPGFSSATPETT 216
            MWWGFKDGAKDGNTSEPRAAAGAAPSQQAAAPSPRGSLPGFSSATP  T
Sbjct:    1 MWWGFKDGAKDGNTSEPRAAAGAAPSQQAAAPSPRGSLPGFSSATPAET 49
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig87.16877.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized5.620e-1995.92protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig87contigEcto-sp9_F_contig87:3452..3937 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size487
Cds size486
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930913.6311247-CDS-Ecto-sp9_F_contig87:3451..39371622930913.6311247-CDS-Ecto-sp9_F_contig87:3451..3937Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig87 3452..3937 +
1692278946.2550342-CDS-Ecto-sp9_F_contig87:3451..39371692278946.2550342-CDS-Ecto-sp9_F_contig87:3451..3937Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig87 3452..3937 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig87.16877.1prot_Ecto-sp9_F_contig87.16877.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig87 3452..3937 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig87.16877.1

>prot_Ecto-sp9_F_contig87.16877.1 ID=prot_Ecto-sp9_F_contig87.16877.1|Name=mRNA_Ecto-sp9_F_contig87.16877.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=162bp
FAANLPPRRRFQKHRGARAHSTFMWWGFKDGAKDGNTSEPRAAAGAAPSQ
QAAAPSPRGSLPGFSSATPETTSSAAAVPTPGGAVTPASPPPTAAPGPPP
AATPVAAAAVTAAAPTVTSVPLAPPAAVQVAPAAVALPAQQPLSVAAPSL
PQQTPTPAAASQ
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mRNA from alignment at Ecto-sp9_F_contig87:3452..3937+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig87.16877.1 ID=mRNA_Ecto-sp9_F_contig87.16877.1|Name=mRNA_Ecto-sp9_F_contig87.16877.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=486bp|location=Sequence derived from alignment at Ecto-sp9_F_contig87:3452..3937+ (Ectocarpus species9 EcSCA_722f female)
TTTGCCGCCAACCTTCCTCCGCGCCGCCGCTTTCAAAAGCACCGGGGGGC
AAGAGCACACAGCACTTTCATGTGGTGGGGTTTCAAAGACGGCGCGAAAG
ACGGCAACACCAGCGAGCCGCGAGCGGCAGCAGGAGCAGCCCCCTCGCAG
CAGGCTGCTGCCCCATCTCCCAGAGGGTCCCTCCCTGGATTCTCATCAGC
GACCCCAGAAACCACTTCCTCTGCGGCCGCCGTGCCGACTCCCGGTGGCG
CCGTGACGCCTGCTAGCCCCCCCCCCACCGCCGCACCGGGCCCGCCCCCG
GCGGCGACTCCAGTAGCAGCCGCGGCCGTCACGGCGGCGGCCCCGACGGT
GACGAGCGTGCCTCTCGCTCCTCCTGCCGCCGTGCAGGTAGCTCCCGCCG
CGGTGGCTCTCCCCGCACAGCAGCCGCTGAGCGTCGCTGCCCCATCCCTC
CCGCAGCAGACCCCAACGCCTGCCGCCGCTTCGCAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig87:3452..3937+

>mRNA_Ecto-sp9_F_contig87.16877.1 ID=mRNA_Ecto-sp9_F_contig87.16877.1|Name=mRNA_Ecto-sp9_F_contig87.16877.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=972bp|location=Sequence derived from alignment at Ecto-sp9_F_contig87:3452..3937+ (Ectocarpus species9 EcSCA_722f female)
TTTGCCGCCAACCTTCCTCCGCGCCGCCGCTTTCAAAAGCACCGGGGGGC
AAGAGCACACAGCACTTTCATGTGGTGGGGTTTCAAAGACGGCGCGAAAG
ACGGCAACACCAGCGAGCCGCGAGCGGCAGCAGGAGCAGCCCCCTCGCAG
CAGGCTGCTGCCCCATCTCCCAGAGGGTCCCTCCCTGGATTCTCATCAGC
GACCCCAGAAACCACTTCCTCTGCGGCCGCCGTGCCGACTCCCGGTGGCG
CCGTGACGCCTGCTAGCCCCCCCCCCACCGCCGCACCGGGCCCGCCCCCG
GCGGCGACTCCAGTAGCAGCCGCGGCCGTCACGGCGGCGGCCCCGACGGT
GACGAGCGTGCCTCTCGCTCCTCCTGCCGCCGTGCAGGTAGCTCCCGCCG
CGGTGGCTCTCCCCGCACAGCAGCCGCTGAGCGTCGCTGCCCCATCCCTC
CCGCAGCAGACCCCAACGCCTGCCGCCGCTTCGCAGTTTGCCGCCAACCT
TCCTCCGCGCCGCCGCTTTCAAAAGCACCGGGGGGCAAGAGCACACAGCA
CTTTCATGTGGTGGGGTTTCAAAGACGGCGCGAAAGACGGCAACACCAGC
GAGCCGCGAGCGGCAGCAGGAGCAGCCCCCTCGCAGCAGGCTGCTGCCCC
ATCTCCCAGAGGGTCCCTCCCTGGATTCTCATCAGCGACCCCAGAAACCA
CTTCCTCTGCGGCCGCCGTGCCGACTCCCGGTGGCGCCGTGACGCCTGCT
AGCCCCCCCCCCACCGCCGCACCGGGCCCGCCCCCGGCGGCGACTCCAGT
AGCAGCCGCGGCCGTCACGGCGGCGGCCCCGACGGTGACGAGCGTGCCTC
TCGCTCCTCCTGCCGCCGTGCAGGTAGCTCCCGCCGCGGTGGCTCTCCCC
GCACAGCAGCCGCTGAGCGTCGCTGCCCCATCCCTCCCGCAGCAGACCCC
AACGCCTGCCGCCGCTTCGCAG
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