mRNA_Ecto-sp9_F_contig8699.16875.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig8699.16875.1
Unique NamemRNA_Ecto-sp9_F_contig8699.16875.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig8699.16875.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8A3_ECTSI)

HSP 1 Score: 341 bits (875), Expect = 1.210e-112
Identity = 174/203 (85.71%), Postives = 182/203 (89.66%), Query Frame = 2 
Query:    2 GVMASNLPKVIVVHQCLSVAFLALTWAVCYQIQPTQGPVFAPINNTIQHSNNAFVVRSRQSFEALISKYETRLTHDWLNKRGIDSGRVAISLAESTLFRKLAKPVTIPGKLWLKFKLSQTFLVGDDRDNGNESTNRGTRRLLVKEASSGTGGWVWLRNGRRSGKRRKAISPPGRRGCGRAPGGSVALPQAASGPLLRSSKDMC 610
            GV ASNLPKVIVVH+CLSVAFLALTWAVCYQIQPTQGPV APIN TIQ+SNNAF+VRSRQSFEALISK E RL+ DWLNKRGIDSGR+AISLAESTLFRKLAKPVTIPGKLWL  KLSQTFLVGDDRDNGNESTN GTRR LVKEA+SGT GW WLR GRRSGKR K I PPGRRG GRAPG  V LPQAASGP LRSSK++C
Sbjct:   13 GVTASNLPKVIVVHECLSVAFLALTWAVCYQIQPTQGPVLAPINKTIQNSNNAFIVRSRQSFEALISKSEKRLSQDWLNKRGIDSGRMAISLAESTLFRKLAKPVTIPGKLWLTLKLSQTFLVGDDRDNGNESTNSGTRRPLVKEAASGTRGWGWLRKGRRSGKRGKTICPPGRRGGGRAPGCFVVLPQAASGPFLRSSKEIC 215
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BLAST of mRNA_Ecto-sp9_F_contig8699.16875.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVT6_9PHAE)

HSP 1 Score: 195 bits (495), Expect = 3.910e-57
Identity = 102/118 (86.44%), Postives = 105/118 (88.98%), Query Frame = 2 
Query:  263 VAISLAESTLFRKLAKPVTIPGKLWLKFKLSQTFLVGDDRDNGNESTNRGTRRLLVKEASSGTGGWVWLRNGRRSGKRRKAISPPGRRGCGRAPGGSVALPQAASGPLL-RSSKDMCW 613
            +AISLAESTLFRKLAKPVTIPGKLWL  KLSQTFLVGDDRDNGNESTNR TRR LVKEASSGTGGW WLR GRRSGKRRKAI PPGRRG GR PG  VALPQAAS PLL RSSK++CW
Sbjct:    1 MAISLAESTLFRKLAKPVTIPGKLWLTLKLSQTFLVGDDRDNGNESTNRVTRRPLVKEASSGTGGWGWLRKGRRSGKRRKAICPPGRRGGGRTPGCFVALPQAASDPLLLRSSKEICW 118
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BLAST of mRNA_Ecto-sp9_F_contig8699.16875.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1Y4_9STRA)

HSP 1 Score: 108 bits (270), Expect = 1.640e-23
Identity = 50/120 (41.67%), Postives = 79/120 (65.83%), Query Frame = 2 
Query:    2 GVMASNLPKVIVVHQCLSVAFLALTWAVCYQIQPTQGPVFAPINNTIQHSNNAFVVRSRQSFEALISKYETRLTHD-WLNKRGIDSGRVAISLAESTLFRKLAKPVTIPGKLWLKFKLSQ 358
            G+  ++ P    +H+ L+VAFLA TWA+CYQ QP+Q  +FAP+   I+ S N +V+  R+ F  +++  E ++     L+ +G D+ R+  +LAEST+FRK  KP+TIPGKLW  +K+ +
Sbjct:   21 GITPADFPTAFAIHELLAVAFLASTWAICYQTQPSQSALFAPLARAIRTSENRWVMGVREGFAGVVASAEAKIAASPRLSSQGWDTARLTTALAESTIFRKSIKPITIPGKLWATWKIME 140
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BLAST of mRNA_Ecto-sp9_F_contig8699.16875.1 vs.
Match: Uncharacterized (protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A4Q6D0M9_9PROT)

HSP 1 Score: 62.4 bits (150), Expect = 6.470e-8
Identity = 37/117 (31.62%), Postives = 59/117 (50.43%), Query Frame = 2 
Query:    2 GVMASNLPKVIVVHQCLSVAFLALTWAVCYQIQPTQGPVFAPINNTIQHSNNAFVVRSRQSFEALISKYETRLTHDWLNKRGIDSGRVAISLAESTLFRKLAKPVTIPGKLWLKFKL 352
            G   S++PK I +H+ L +  LALTW++CY    +Q P+F      I     A + +S ++ + L                   S  + +S  ES+  RKL +P+T+PGK++L FKL
Sbjct:   20 GFGPSDIPKAIFIHELLGMFMLALTWSLCYFYPLSQSPMFVKPLAVISSKMPAALAKSLEANKFL-------------------SSPIGVSYVESSCLRKLIRPLTLPGKVFLTFKL 117
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BLAST of mRNA_Ecto-sp9_F_contig8699.16875.1 vs.
Match: Uncharacterized (protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1JN94_GUITC)

HSP 1 Score: 59.3 bits (142), Expect = 6.010e-7
Identity = 34/115 (29.57%), Postives = 63/115 (54.78%), Query Frame = 2 
Query:    2 GVMASNLPKVIVVHQCLSVAFLALTWAVCYQIQPTQGPVFAPINNTIQHSNNAFVVRSRQSFEALISKYET--RLTHDWLNKRGIDSGRVAISLAESTLFRKLAKPVTIPGKLWL 340
            G+  ++L K +VVH+ + +++LA +W +CY +QP +           +  +  F     + F+   +K +   R +  +   R +D  R+ +SLAES++ R  A+PVT+P KLW+
Sbjct:   31 GLTPTDLAKALVVHETVGISWLAGSWGLCYAVQPIR-----------RLGSRYFQQNIDKFFDKAFTKLQPVFRWSARFALVRSMDKQRLIMSLAESSILRNAARPVTVPLKLWV 134
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BLAST of mRNA_Ecto-sp9_F_contig8699.16875.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XSQ9_HETAK)

HSP 1 Score: 58.9 bits (141), Expect = 8.290e-6
Identity = 42/156 (26.92%), Postives = 64/156 (41.03%), Query Frame = 2 
Query:    2 GVMASNLPKVIVVHQCLSVAFLALTWAVCYQIQPTQGPVFAPINNTIQHSNNAF----------VVRSRQSFE-----------------------------ALISKYETRLTHDWLNKRGIDSGRVAISLAESTLFRKLAKPVTIPGKLWLKFKL 352
            G  AS +PK I V++ L ++FL  TW++CYQ+QP Q  V       +Q +  A            V S  S                               ++  K    +   +LN       ++  S  +S++FRK  KPVTIP K+WL +K+
Sbjct:   38 GFEASEIPKAIAVYEILGLSFLVSTWSICYQLQPHQSAVLKSCRQFLQSNEQALPKFLSTGYQNAVHSADSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSIPGKISEIIGGGFLNTE-----KLVASYIQSSVFRKACKPVTIPAKIWLTWKI 188
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8699.16875.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
Uncharacterized1.210e-11285.71protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized3.910e-5786.44protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.640e-2341.67protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Uncharacterized6.470e-831.62protein n=1 Tax=Proteobacteria bacterium TaxID=197... [more]
Uncharacterized6.010e-729.57protein n=2 Tax=Guillardia theta TaxID=55529 RepID... [more]
Hypothetical8.290e-626.92protein n=1 Tax=Heterosigma akashiwo TaxID=2829 Re... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8699contigEcto-sp9_F_contig8699:758..2937 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score339.7
Seed ortholog evalue9.2e-91
Seed eggNOG ortholog2880.D7G8A3
EggNOG OGs2D0D4@1,2SDR5@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorychloroplast
Exons3
Model size1540
Cds size609
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8699.16875.1prot_Ecto-sp9_F_contig8699.16875.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig8699 765..2013 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930913.5130744-UTR-Ecto-sp9_F_contig8699:757..7641622930913.5130744-UTR-Ecto-sp9_F_contig8699:757..764Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8699 758..764 +
1692278946.2027435-UTR-Ecto-sp9_F_contig8699:757..7641692278946.2027435-UTR-Ecto-sp9_F_contig8699:757..764Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8699 758..764 +
1622930913.5771697-UTR-Ecto-sp9_F_contig8699:2013..29371622930913.5771697-UTR-Ecto-sp9_F_contig8699:2013..2937Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8699 2014..2937 +
1692278946.2457724-UTR-Ecto-sp9_F_contig8699:2013..29371692278946.2457724-UTR-Ecto-sp9_F_contig8699:2013..2937Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8699 2014..2937 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930913.5316017-CDS-Ecto-sp9_F_contig8699:764..8661622930913.5316017-CDS-Ecto-sp9_F_contig8699:764..866Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8699 765..866 +
1692278946.2141776-CDS-Ecto-sp9_F_contig8699:764..8661692278946.2141776-CDS-Ecto-sp9_F_contig8699:764..866Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8699 765..866 +
1622930913.5455515-CDS-Ecto-sp9_F_contig8699:1316..14381622930913.5455515-CDS-Ecto-sp9_F_contig8699:1316..1438Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8699 1317..1438 +
1692278946.224264-CDS-Ecto-sp9_F_contig8699:1316..14381692278946.224264-CDS-Ecto-sp9_F_contig8699:1316..1438Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8699 1317..1438 +
1622930913.5638964-CDS-Ecto-sp9_F_contig8699:1628..20131622930913.5638964-CDS-Ecto-sp9_F_contig8699:1628..2013Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8699 1629..2013 +
1692278946.235051-CDS-Ecto-sp9_F_contig8699:1628..20131692278946.235051-CDS-Ecto-sp9_F_contig8699:1628..2013Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8699 1629..2013 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig8699.16875.1

>prot_Ecto-sp9_F_contig8699.16875.1 ID=prot_Ecto-sp9_F_contig8699.16875.1|Name=mRNA_Ecto-sp9_F_contig8699.16875.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=203bp
MASNLPKVIVVHQCLSVAFLALTWAVCYQIQPTQGPVFAPINNTIQHSNN
AFVVRSRQSFEALISKYETRLTHDWLNKRGIDSGRVAISLAESTLFRKLA
KPVTIPGKLWLKFKLSQTFLVGDDRDNGNESTNRGTRRLLVKEASSGTGG
WVWLRNGRRSGKRRKAISPPGRRGCGRAPGGSVALPQAASGPLLRSSKDM
CW*
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mRNA from alignment at Ecto-sp9_F_contig8699:758..2937+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig8699.16875.1 ID=mRNA_Ecto-sp9_F_contig8699.16875.1|Name=mRNA_Ecto-sp9_F_contig8699.16875.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2180bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8699:758..2937+ (Ectocarpus species9 EcSCA_722f female)
AGGCGTGATGGCGAGCAACCTTCCCAAGGTGATCGTCGTGCATCAGTGCT
TGAGCGTGGCCTTCCTGGCGCTTACCTGGGCTGTCTGCTATCAAATACAA
CCTACGCAGGCAAGGCACCCAAGAGGACGAGATAAATGGACGGAGATAGA
CAGACAGAACAGACGAGAGAAAATTGTGCTGCCCCGGTAGCGTCTTCGAT
CTCAAAACCATGCATGGCGTCCCCAGTCATTGTTTCTCCTAGCTATATAG
AATTGCCAGGTAAAGTGCCACACTCGTAGTGTGGGGGAACCTTCATGAAG
GGAACATTTTTTCTCCGTGTCGTTGTTTCTTCTCTCGCGTGACTCACCCG
TGCCCCCTCTCCCGCCGCTCGTGTGGAGCCTGTAAGGTGGTACAAAAGTG
GTCGGCGTCATCCTACGTCTATGGCACGATACGTCATTTAGCTGATTATA
CATTCGTGTGCCCAATTATGAGAAGACAGTTCACAGCCCAGGCAACGGGA
ATTACCAGACACGTGCCCTTACTCCCTTGCCTACTTCTGTGCACACTTGA
TCAACGCAGGGCCCAGTGTTCGCGCCTATCAACAATACGATCCAACATAG
CAATAACGCCTTCGTCGTCCGCAGTCGCCAGTCCTTCGAGGCCCTCATCT
CCAAGTATGAGACGCGACTTACCCATGATTGGTGAGAGACACAAGCTTGA
TTATTGGTACTGCTGTTTCGTGTACTACTTGTGGGAATAAACGTGTCTCA
ACGTTTGTATTTTCACTTCCGTTGTTTCTTCACGTCCGCTTGTTTGCTGT
CCATATGCGTCGCTTTGTGCGCCTTGTCTCTTTTTTGTCGATCTTTAATT
TAATCTCTACCTTACAATCAGGCTCAACAAGAGAGGAATCGACTCCGGCA
GAGTGGCGATCTCCCTAGCGGAATCGACCCTGTTCCGAAAGCTCGCCAAG
CCGGTCACCATCCCGGGAAAGCTCTGGCTCAAGTTCAAGCTCTCGCAAAC
ATTCCTGGTCGGCGACGACCGCGACAACGGCAATGAAAGCACCAACAGGG
GTACCAGAAGGTTGTTGGTAAAAGAAGCATCTTCGGGGACCGGAGGATGG
GTGTGGCTGAGGAACGGAAGACGATCTGGAAAGAGAAGGAAAGCGATTAG
CCCCCCCGGGAGGAGGGGGTGTGGGAGGGCGCCCGGCGGCTCTGTTGCCT
TACCGCAGGCCGCTTCTGGCCCGTTGTTGCGATCCTCGAAGGACATGTGT
TGGTAGAAAACTAACGCTGGGGCACACGCTGAGAGGCTCCAAAGCTTGGC
GGGGCCCAGGCTAGAGATGACTCGACCTTTTTCGGTCCTTTGTGATACCC
CACAGTTCCCATAGAGCAGTGGAGGTGGCGGTATATCGTATCGCGGTGTA
GTGAAGTGACAAGAAATCACCACGTTATATCAGGACCCGCGCTATTGGGA
AACGGTTCCTGAATAGAATCTAGAAGCAGTAGGCTAGGTTGTTGTGCCAA
GGATTTTTTCCGCGATACTCCAGTATGTCACATGGGGAACCGCGTTATTC
CGGACCGCGGTGTGTCGGCATCACTACTGTAGTCGGTCTTGTTTGTTTCC
CTCCCTACCTCGCTTTGCGCACTTGGCGGGGTCGTCCGGCTTCTATTGTG
TGCATTTGCACCAGCTACAGCTTGTATGGTTGCCAACGGAAACAGAGTCA
GCTTCTCCAACATGACGAAGAAGATCACACGAGCCACGGTGTGCGATTGT
GCTCTCTTTGTTTACGCACAAGGACTGCGGGTGCGCGAAGGTCTGTGTTT
GTGTTGCAGCATTGAGGACTGACGTAATGCTGCCCAATTTTTTTTTGGTA
GGTTCCATCCCGCTGTTGCCTAGAAGCCGAAATCACACCATTAGATTTGT
GTCCACGCTTATTTTGAGTATTGTTTTGGAGGCCCCAGTCGGGATCACAG
AGAAAGGTAGAATGACACACCAGAAAGAGTTTTTACCACCTTTGTTATTG
CGTGCTTGCCGTTGTTTAGACTTCACGTCTCGACAGGAGTCAGCCTTTCC
GTTCCCGCTTTACGCGGCTAAGATGATCTGAAAAGGGGGGGGTTCCTCCT
CCTCTTAAATTGGCTCTTGGAAGACAATAATAGCTCCAAATCACGGTGGG
TGGTGGCAAGGATGATACCGTAAAGAGGAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8699:758..2937+

>mRNA_Ecto-sp9_F_contig8699.16875.1 ID=mRNA_Ecto-sp9_F_contig8699.16875.1|Name=mRNA_Ecto-sp9_F_contig8699.16875.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1218bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8699:758..2937+ (Ectocarpus species9 EcSCA_722f female)
ATGGCGAGCAACCTTCCCAAGGTGATCGTCGTGCATCAGTGCTTGAGCGT
GGCCTTCCTGGCGCTTACCTGGGCTGTCTGCTATCAAATACAACCTACGC
AGATGGCGAGCAACCTTCCCAAGGTGATCGTCGTGCATCAGTGCTTGAGC
GTGGCCTTCCTGGCGCTTACCTGGGCTGTCTGCTATCAAATACAACCTAC
GCAGGGCCCAGTGTTCGCGCCTATCAACAATACGATCCAACATAGCAATA
ACGCCTTCGTCGTCCGCAGTCGCCAGTCCTTCGAGGCCCTCATCTCCAAG
TATGAGACGCGACTTACCCATGATTGGGCCCAGTGTTCGCGCCTATCAAC
AATACGATCCAACATAGCAATAACGCCTTCGTCGTCCGCAGTCGCCAGTC
CTTCGAGGCCCTCATCTCCAAGTATGAGACGCGACTTACCCATGATTGGC
TCAACAAGAGAGGAATCGACTCCGGCAGAGTGGCGATCTCCCTAGCGGAA
TCGACCCTGTTCCGAAAGCTCGCCAAGCCGGTCACCATCCCGGGAAAGCT
CTGGCTCAAGTTCAAGCTCTCGCAAACATTCCTGGTCGGCGACGACCGCG
ACAACGGCAATGAAAGCACCAACAGGGGTACCAGAAGGTTGTTGGTAAAA
GAAGCATCTTCGGGGACCGGAGGATGGGTGTGGCTGAGGAACGGAAGACG
ATCTGGAAAGAGAAGGAAAGCGATTAGCCCCCCCGGGAGGAGGGGGTGTG
GGAGGGCGCCCGGCGGCTCTGTTGCCTTACCGCAGGCCGCTTCTGGCCCG
TTGTTGCGATCCTCGAAGGACATGTGTTGGTAGGCTCAACAAGAGAGGAA
TCGACTCCGGCAGAGTGGCGATCTCCCTAGCGGAATCGACCCTGTTCCGA
AAGCTCGCCAAGCCGGTCACCATCCCGGGAAAGCTCTGGCTCAAGTTCAA
GCTCTCGCAAACATTCCTGGTCGGCGACGACCGCGACAACGGCAATGAAA
GCACCAACAGGGGTACCAGAAGGTTGTTGGTAAAAGAAGCATCTTCGGGG
ACCGGAGGATGGGTGTGGCTGAGGAACGGAAGACGATCTGGAAAGAGAAG
GAAAGCGATTAGCCCCCCCGGGAGGAGGGGGTGTGGGAGGGCGCCCGGCG
GCTCTGTTGCCTTACCGCAGGCCGCTTCTGGCCCGTTGTTGCGATCCTCG
AAGGACATGTGTTGGTAG
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