mRNA_Ecto-sp9_F_contig869.16871.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig869.16871.1
Unique NamemRNA_Ecto-sp9_F_contig869.16871.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig869.16871.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0A9_ECTSI)

HSP 1 Score: 249 bits (637), Expect = 1.460e-78
Identity = 135/154 (87.66%), Postives = 140/154 (90.91%), Query Frame = 1 
Query:   46 VHASKNRPRLRGQITAPIPEPPTRTHTLRLSSLRLSARIRTGHSRCRTLATPGHTKWLLENSVVPSRVSRNERGGGCRPLGAEAEQAMRSRGQTNQRACQPEAKDVARRRRRRALPGGDEKRTALEARDQQRFRPDVAAGRSDTASATARRRPA 507
            +  +++RPRLRGQI APIPEPPTRTHTLRLSSLR SAR RTGHSRCRTLATPGHTKW LE SVVPS VSRNERG GCRP GAEAEQAMRSRGQTNQRACQ EAKDVARRRRRRALP G EKRTALEARDQ+RFRPDVAAGRSDTASATARRR A
Sbjct:    2 ITRARSRPRLRGQIAAPIPEPPTRTHTLRLSSLRPSARARTGHSRCRTLATPGHTKWSLEKSVVPSTVSRNERGEGCRPPGAEAEQAMRSRGQTNQRACQQEAKDVARRRRRRALPTGGEKRTALEARDQRRFRPDVAAGRSDTASATARRRSA 155
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig869.16871.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized1.460e-7887.66protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig869contigEcto-sp9_F_contig869:362..2671 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size508
Cds size201
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig869.16871.1prot_Ecto-sp9_F_contig869.16871.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig869 362..562 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930912.2907696-CDS-Ecto-sp9_F_contig869:361..5621622930912.2907696-CDS-Ecto-sp9_F_contig869:361..562Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig869 362..562 -
1692278945.6229124-CDS-Ecto-sp9_F_contig869:361..5621692278945.6229124-CDS-Ecto-sp9_F_contig869:361..562Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig869 362..562 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930912.3058052-UTR-Ecto-sp9_F_contig869:562..6531622930912.3058052-UTR-Ecto-sp9_F_contig869:562..653Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig869 563..653 -
1692278945.632464-UTR-Ecto-sp9_F_contig869:562..6531692278945.632464-UTR-Ecto-sp9_F_contig869:562..653Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig869 563..653 -
1622930912.3188214-UTR-Ecto-sp9_F_contig869:2456..26711622930912.3188214-UTR-Ecto-sp9_F_contig869:2456..2671Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig869 2457..2671 -
1692278945.6422765-UTR-Ecto-sp9_F_contig869:2456..26711692278945.6422765-UTR-Ecto-sp9_F_contig869:2456..2671Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig869 2457..2671 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig869.16871.1

>prot_Ecto-sp9_F_contig869.16871.1 ID=prot_Ecto-sp9_F_contig869.16871.1|Name=mRNA_Ecto-sp9_F_contig869.16871.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=67bp
MRSRGQTNQRACQPEAKDVARRRRRRALPGGDEKRTALEARDQQRFRPDV
AAGRSDTASATARRRPA
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mRNA from alignment at Ecto-sp9_F_contig869:362..2671-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig869.16871.1 ID=mRNA_Ecto-sp9_F_contig869.16871.1|Name=mRNA_Ecto-sp9_F_contig869.16871.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2310bp|location=Sequence derived from alignment at Ecto-sp9_F_contig869:362..2671- (Ectocarpus species9 EcSCA_722f female)
TCTCACAATGTACGCATATAACCTCTCCCTCCGTACCGATTGAATGTTCA
CGCGAGCAAGAATCGTCCGCGTCTTCGCGGACAAATTACTGCTCCAATAC
CCGAACCCCCGACGCGCACGCACACGCTTCGTCTCTCTTCCCTTCGGCTC
TCGGCACGGATACGGACAGGACACAGCCGTTGCAGGACTTTAGCCACACC
CGGTCACACGAAGTGGTGAGTACAGCGGTAATTGTGTGCTGTTCTGTAGA
CTGCGAAAAGCAAGACATATGTGCTTGCGGTTTTTTTGTTGCGGTCGCTG
CTCCTAACTTCGGTTTGGGATTCTCTTCTCCTGGCCCGCTGTCGCGCCCT
GGTCTGGTTTCGTCTCATGGCCTTACACATCTTGGCGAGTGATGGTGGAC
TACGATGTTCTCGGATCTATCTACCTTGAAGATACATACTCAGACCGAGG
GGTACCGAATAGAGAGATTCACAGGCTTGTTTTTCGCCAAATAGTCTAGA
CTCGAGCCGTGGTAATTTCAGACCCCGACGACTCAAACCTCCCATCAACA
GCTTCCAACAGCTTCCCTTTTACCCCGTCCCAGCATAACACATACAGTAC
AGCAGTAATGGTCCCGATATACTGTAGTTGGTGGCACCATAAAGTATGAA
ATTCCCGATTATAGTGGCATCAAACTCTCTTGTCACAATCGCAACCCGGT
TATTTAGTGGCATTTTACCACAATTAATTATTGAGGACGGGTCCTCAATA
CACGGGGTCTTCAATAATGTTAGTGGCATTTTGGGCATCTCATTCCCCCA
ATAGTGGCAATTCAAAAAGCGTCGAAGCCCCGGTATGACTGATTCCCACG
ACGCGTAAGAATTAATCACGAGAAGATTGGGAGTTAACTTTCGGTCATTT
GGACAAACCAAATCAAATGTGCGTTCGTCTTACGTTCTCGTCTCCGCAAA
TCATTGGATTCCGTTCTTCGAAATTCAACTTGAATACAATGTGAATACAA
TGTGTAAACTCGCGGGATCAAAACTCGCGGGACCATGACGGACGACGCGC
AAACAAATGGATTACCCCGAATATTTGTCTGTCTTCTTGTGCAACCTACA
CGTGCATTGCAATGTACGGACAAATGGAGCAACATGGGTGTCAGTGATGA
TGTGTTCGTGTGCATGGCCCGGCGCACCACCGCCGTGATGGCGGTGACTG
TACTGACCACATTCGTGTGCAGCGACCAACTTTATATCAGAAATCCAAGC
GTTCCCCTTTATGTGCGCATCGACCTGTTTCAGTGGTTTGGTTATACGCA
CGAATCTCCACCACCAGCGCCGATATCAGTATCGTTCGGCAGCATCTGTT
CCTGCCTGGCGCGTGGGTTCGCTGGAAGGTTTGGCGTCTCATGCCCTACC
GTGTGATGCCTGTCGTCGAGATTAATTTTTTATTTCCTGCTGCATTTCTT
GATAATCGGAGAGCAAGAAACGCGTTTGTTTGCGGAGCCGAGGGTGTGTG
AACCTGCGAAATACCGCCGTGGGTGACACAAGGCATCACACCCCCTGGAA
TGATTTTCAAAGACCGTTTTACTCCACGCCAAAAGAGTCACGAAGCGGAA
AATAACCGGGTTGGGGGCATCTCGTTGAGAGCTTCCGAAATGCATCGTTT
GATTTGTTCATCCTCTTCGTCGTGGAGTAATCGAGCTTGGAACGTTGGTG
CAGGGGGGGTGCTGTCTTACGTCACATTCGGTAACACCACCTGCAAGATA
TGCCCGCACATTGTAACTCTCTCTCTACTATCCCCCTCACGCTGCAGCTT
GTAGATGCCTTGATACCGGCTTTGGTTTCGTTTCAGCCACGTCGATATTC
CTTCTCTCTCACCTCTCCCTCCGTCTTGCTAACCCCCCCCCCACCTTCTC
CCTCCGCCTTGTAGAACTCGCCGCCCCGCCCGTCTCCCCCCACTTACTGC
CCCCCCCCCCCCCTATCTTCACGCCATCCCGGCTGCCTGCCTCTTGCGGT
GTTTTTGGAATTCCGCAGGCTACTTGAGAACAGTGTGGTCCCTTCGAGGG
TTTCCAGAAACGAACGCGGAGGAGGTTGCCGGCCTCTAGGGGCGGAAGCA
GAACAAGCGATGCGAAGCAGGGGCCAGACCAACCAGCGTGCCTGCCAGCC
GGAGGCGAAAGACGTTGCACGGAGGAGGAGGAGGAGAGCACTCCCGGGGG
GGGACGAGAAACGAACGGCTCTGGAAGCTAGAGATCAACAGCGATTCCGA
CCCGACGTCGCCGCCGGTAGAAGCGACACCGCCAGCGCCACGGCGAGGCG
GCGGCCTGCC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig869:362..2671-

>mRNA_Ecto-sp9_F_contig869.16871.1 ID=mRNA_Ecto-sp9_F_contig869.16871.1|Name=mRNA_Ecto-sp9_F_contig869.16871.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=402bp|location=Sequence derived from alignment at Ecto-sp9_F_contig869:362..2671- (Ectocarpus species9 EcSCA_722f female)
ATGCGAAGCAGGGGCCAGACCAACCAGCGTGCCTGCCAGCCGGAGGCGAA
AGACGTTGCACGGAGGAGGAGGAGGAGAGCACTCCCGGGGGGGGACGAGA
AACGAACGGCTCTGGAAGCTAGAGATCAACAGCGATTCCGACCCGACGTC
GCCGCCGGTAGAAGCGACACCGCCAGCGCCACGGCGAGGCGGCGGCCTGC
CATGCGAAGCAGGGGCCAGACCAACCAGCGTGCCTGCCAGCCGGAGGCGA
AAGACGTTGCACGGAGGAGGAGGAGGAGAGCACTCCCGGGGGGGGACGAG
AAACGAACGGCTCTGGAAGCTAGAGATCAACAGCGATTCCGACCCGACGT
CGCCGCCGGTAGAAGCGACACCGCCAGCGCCACGGCGAGGCGGCGGCCTG
CC
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