mRNA_Ecto-sp9_F_contig1248.1944.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig1248.1944.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTZ9_9PHAE) HSP 1 Score: 2414 bits (6256), Expect = 0.000e+0 Identity = 1545/1929 (80.09%), Postives = 1591/1929 (82.48%), Query Frame = 1
Query: 4 EESRVIVASPTTSDAVGAGSTSDAGYFTPPPSVGQGTTRKKSAATRGSPSYADYDGSSSDDGSSGSGIRKRRSRRGPTLAPALDSRTDRDRPQSAEAGETPEEAGTKRGGGRWKWASTAASRAPGKFSRANGGGGCDGEANPSPFSKHMQQPAAVAEPETLTQDSGKSNTRNPDGLNSTGSGEGRTTGVDATLGGSAATTTAVASSTNPAKMTPWSWKMLATRTSTVSTSAASITXXXXXXXXXXXXXXXXXXXXXXXXX-RTDRATAPKEQEARQSFVQPAAATTTTAGRGARPSSVKQTAAXXXXXXXXXAGRTGVHVGYQKMRISSGGXXXXXXXXXXXXXXXTLSRPPPAPGTTTPRYRGTVPNPAVGGTCESSKRGGYGPRSPMPPPSPGGSSDGVAAPPLSEEGGVTPRQPQATATTPSGNGANGNDGVVDVHLAEGELKAGGWKHLDSAGGGSFEIDSRHSSSTTTPNIATEKTVTRAGEEKPEEQSGRTRDGFDSGFEATAVAGKSDGGMTEREIIAAAEAAVASAKKAVAGTVDRATAPGTPPEFPVDTAELLSDAAATTPGTKGKADTRGVDRTGKVQLEGTAAVTGGTRRQCVEKENLAVTGKDGGSVSRTGRDDNWWRQNAAQALAISAEMKKTPGRSRSRNGXXXXXXXXXXXXXXXXXXXXXXXXXXXASTRRGGVAPRDGRGTPSSRSGSVVGRAKGRNGGGGGSRSREDAGGWPTEDGAEGGVAGVAGADGTASISAQGVMIPMDVIASTEVSPTFSTISSREQAERDRERLAAMDGGGDGGYRRSSWGVALPLSGTDDTPREHGGAHGARESGTGRRSRENSGWGLTSDDGGDWEQQRRWRSSLASSASGVWSDDGVHDXXXXXXXXXXXXXXMYSREEEDGDLSSSRSSISTGYESSAMWKGSEPRQPGTPAGEDQN---GDVGGNGRGSGKYAPPSPAWPLQHPPVEQTPDAELSGLEVSAVKKKAYYEIQAAAEAVESSTPSTGSDASSRQTKDLPSARMGRMPSETRALLSSRGGSLPEFFPFDAPPGSKGSRAGGGKGGHFCRAEASGPA--SGXXXXXXXVKSTPSMPPRIQTSVSEGTILQYKVGGYGSKPQHASVEEAVAMVFAWSLLSRDGGRTTTAQSQQARPAGATPDTRHGGRGWRRGDSQYFFSSRGSSALGMSPAGMIEHHYDRHRNPSPAEMRRHDSNASGSRRXXXXXXXXXXXXXXXXXXXXXXXGRGSASALDRRVRQALSTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQERQGSAPRNIAFVVAPRGEEDGHVGNGGRVSRGKSWSFAGTPTSTVFSPSSAVANPFISTRYTQHSAYSFYSNSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGVGKMTHPLPRTTSVADKTGGEGGRRLDADDGAQGRVTASAAQGTRKQGHAGTDRRTARATATARATEGLASDMGGSRRSAGSGRRPIYRTMSLRGRSIFSVGGGNAGTAERRAVSMSSFRRRGESLREDGENYRSYSWRAGGRGVANRVCSVLSARWLFSRNWNKRGREEKTGKDRSRGEDSSTNVSRPSTYTSGGVVGVVDGGEFSSXXXXXXXXXXXXXXXXXXVVDVKSSMDTPIGGAPGRAEKTRALGGSGGGPRDEGTSRPAAGEGGSATAGGGSVGPGTTAASGRKRISFPRSAFLGFSRSAQRSMSSYSFVQHDPASRAGGVGGGDGDGVGGVRASQSTTAAEADPGLAVDAGRGTLPATSVDFAGGGDEKANGSPKANRAAPRDNDGDGDVQYVNFNGHGGRAGGVVALRRGDGVAAVEIEGDRSVSTTGYSSSLKPLQAEQDEEEAKRKMDALLLRSRVHTHGNPVVPA 5772
EE RV+VASPTTSDAVGAGSTSDAGYFTPPPSVGQGTTRKKSAAT GS SYAD+DGSS DDGS GSG RKRRSRR PTLA ALDSR D D QSAE GETP E G+KRGGGRWKW STAA APGKFSRA GGGGCDGEANPSP SKHMQQPAAVAEPETLTQDSGKSN R PDG NSTGSGEG TT +D+TLGG ATTTAVAS T AKMTP SWK+LATRTST ST XXXXXXXXXXXXXXXXXXXXXXXX RTDRA A KEQE+R+ FVQP AA TTTAGRGARPSSVKQTA XXXXXX GRTGVHVGYQKMRISSGG LSRPPPAPGTTTPRYRGT+PN AVGGTCE SKR G+GPRSPMPPPSPGGSSDG APPLSEEGGVTPRQ QATATTPSGNGANG++GVVDVHLAEGELKA G KHLDSAG GS EID+RHSSS++T +IATEK VTRAGEEKPEEQSGRT DGFDSGFEATAVA KSDGGM EREIIAAAEAAV SAKKA AGT DR TAPG PPEFPVDTAELLSDAAATTPGTK KADTRGVDRTGKVQLEGT VTGGTRRQCVEKENL V+G+DGGSVSRT RD+NWWRQNAA+ALAISAEMKKTPGRSRSRNGXXXXXXXXXXXXXXX A+TRRGGV PR SSRSGSV+GRAKG N GGGGSRSREDAG W TEDGAE GVAGV GADG ASISAQGV+IPMD IASTEVSPTFSTISSREQAERDRERLAAM+G GDGGYRRSSWGVALPLSGTDDTPREH GAHG RESGTGRRSRE+SGWGLTSDD GDWEQQRRWRSSLASSASGVWSDDGVHD MYS EEEDGDLSSSR SISTGYESSA KGS+PRQPGTP GEDQ+ GD GG R S YAPPSPAWPLQHPPV QTPDA LS LE+SAV KKAYYEIQAAAE VESSTPSTGSD SSRQ K+LP A MGRMPSETRALLS L + P S+G R +G G VKSTPSMPPRIQTSVSEGTILQ K GGYGSKPQHASVEEAVAMVFAWSLLSRDGGRTTTAQSQQARPAGATPD RHGGRGWRRGDSQYFFSSRGSSALGMSPAGMIEHHY+RHRNPSPAEM RH SNASGSRR GR S SALDRRVRQALSTP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX QERQGSA R+IAFVVAP G+EDGHVGNGGRVSRGKSWSFAGTPTSTVFSP+SAVANPFISTRYTQHSAYSFYSNS GVGK+T+PLPRTTSV DKT EGGRRLDADDGAQGRV ASA+QG RKQG A DRR AR TATARATEGLASDMGGSRRS GSGRRPIYRTMSLRGRSIFSV GGNAGTAERRAVSMSSFRRRGESLREDGE YRSYSWR GGRGVANRVCSVLSARWLFSRNWNK+ REEK KD+SRG DSS+NVSRPSTYTSGGV+GVVDGGE S XXXXXXXXXX VVDV S MD P+GGA GRA KTR LGGSGGGPR EGTSRPAAGEGGSATAGG SVGPGTTAASGRKRISFP S FLGFSRSAQRSMSSYSFVQHDPASRAGGVG GGVRASQSTTAAE DPGLAVDAGRGTL ATSVDFAGGGD KANGSPK NRAAPR N GDGDVQYVNFNGH GRAGGVVALRRGDGVAAVEIEGDRSV++TGYSSSLKPLQAEQD EEAKRKMDALLLRSRVHTH NPVVPA
Sbjct: 2 EEPRVMVASPTTSDAVGAGSTSDAGYFTPPPSVGQGTTRKKSAATSGSRSYADHDGSSGDDGSVGSGFRKRRSRRRPTLASALDSRADGDCSQSAEVGETPVEVGSKRGGGRWKWTSTAALPAPGKFSRAKGGGGCDGEANPSPLSKHMQQPAAVAEPETLTQDSGKSNRRKPDGPNSTGSGEGSTTVLDSTLGGPVATTTAVASLTTSAKMTPRSWKILATRTSTASTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGRTDRAIAQKEQESRRPFVQPVAAATTTAGRGARPSSVKQTAVEAAXXXXXXXGRTGVHVGYQKMRISSGGGNSATTCAAEADADEALSRPPPAPGTTTPRYRGTIPNSAVGGTCERSKRDGHGPRSPMPPPSPGGSSDGATAPPLSEEGGVTPRQSQATATTPSGNGANGDNGVVDVHLAEGELKARGCKHLDSAGWGSSEIDTRHSSSSSTLSIATEKIVTRAGEEKPEEQSGRTSDGFDSGFEATAVAVKSDGGMAEREIIAAAEAAVTSAKKAAAGTGDRVTAPGIPPEFPVDTAELLSDAAATTPGTKDKADTRGVDRTGKVQLEGTVVVTGGTRRQCVEKENLRVSGEDGGSVSRTVRDNNWWRQNAAKALAISAEMKKTPGRSRSRNGXXXXXXXXXXXXXXXRG----------ATTRRGGVTPRXXXXXXSSRSGSVIGRAKGWNSGGGGSRSREDAGAWYTEDGAESGVAGV-GADGPASISAQGVVIPMDDIASTEVSPTFSTISSREQAERDRERLAAMNGRGDGGYRRSSWGVALPLSGTDDTPREHRGAHGVRESGTGRRSRESSGWGLTSDDDGDWEQQRRWRSSLASSASGVWSDDGVHDDDHDGSGGSSACTSMYSDEEEDGDLSSSRFSISTGYESSARGKGSQPRQPGTPTGEDQSQHDGDAGGRDRASDTYAPPSPAWPLQHPPVGQTPDAVLSELEISAVTKKAYYEIQAAAEEVESSTPSTGSDVSSRQAKNLPRATMGRMPSETRALLSRFVLLLRLCCNYSLP--SRGGRK------SVAPTVLNGALLPRGPNTGSFQVKSTPSMPPRIQTSVSEGTILQSKAGGYGSKPQHASVEEAVAMVFAWSLLSRDGGRTTTAQSQQARPAGATPDMRHGGRGWRRGDSQYFFSSRGSSALGMSPAGMIEHHYERHRNPSPAEMHRHGSNASGSRRSGRSRTATRQEHKQRRDRSATSSGRRSGSALDRRVRQALSTPPTPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXP-QERQGSATRDIAFVVAPGGKEDGHVGNGGRVSRGKSWSFAGTPTSTVFSPTSAVANPFISTRYTQHSAYSFYSNSNSPTSTRSVDNREETKTAETKATLASTSGGGDGGGLSCSDG-----GVGKITYPLPRTTSVTDKTDDEGGRRLDADDGAQGRVIASASQGARKQGRADIDRRAARVTATARATEGLASDMGGSRRSIGSGRRPIYRTMSLRGRSIFSVSGGNAGTAERRAVSMSSFRRRGESLREDGEYYRSYSWRGGGRGVANRVCSVLSARWLFSRNWNKKDREEKR-KDQSRGGDSSSNVSRPSTYTSGGVIGVVDGGELPSSEDGXXXXXXXXXX----VVDVTSLMDIPMGGAEGRAGKTRTLGGSGGGPRGEGTSRPAAGEGGSATAGGVSVGPGTTAASGRKRISFPLSTFLGFSRSAQRSMSSYSFVQHDPASRAGGVGXXXXXXXGGVRASQSTTAAEEDPGLAVDAGRGTLMATSVDFAGGGDGKANGSPKTNRAAPRGNGGDGDVQYVNFNGHCGRAGGVVALRRGDGVAAVEIEGDRSVASTGYSSSLKPLQAEQDGEEAKRKMDALLLRSRVHTHVNPVVPA 1900
BLAST of mRNA_Ecto-sp9_F_contig1248.1944.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G390_ECTSI) HSP 1 Score: 1285 bits (3324), Expect = 0.000e+0 Identity = 788/974 (80.90%), Postives = 808/974 (82.96%), Query Frame = 1
Query: 4 EESRVIVASPTTSDAVGAGSTSDAGYFTPPPSVGQGTTRKKSAATRGSPSYADYDGSSSDDGSSGSGIRKRRSRRGPTLAPALDSRTDRDRPQSAEAGETPEEAGTKRGGGRWKWASTAASRAPGKFSRANGGGGCDGEANPSPFSKHMQQPAAVAEPETLTQDSGKSNTRNPDGLNSTGSGEGRTTGVDATLGGSAATTTAVASSTNPAKMTPWSWKMLATRTSTVSTSAASITXXXXXXXXXXXXXXXXXXXXXXXXXRTDRATAPKEQEARQSFVQPAAATTTTAGRGARPSSVKQTAAXXXXXXXXXAGRTGVHVGYQKMRISSGGXXXXXXXXXXXXXXXTLSRPPPAPGTTTPRYRGTVPNPAVGGTCESSKRGGYGPRSPMPPPSPGGSSDGVAAPPLSEEGGVTPRQPQATATTPSGNGANGNDGVVDVHLAEGELKAGGWKHLDSAGGGSFEIDSRHSSSTTT----PNIATEKTVTRAGEEKPEEQSGRTRDGFDSGFEATAVAGKSDGGMTEREIIAAAEAAVASAKKAVAGTVDRATAPGTPPEFPVDTAELLSDAAATTPGTKGKADTRGVDRTGKVQLEGTAAVTGG-TRRQCVEKENLAVTGKDGGSVSRTGRDDNWWRQNAAQALAISAEMKKTPGRSRSRNGXXXXXXXXXXXXXXXXXXXXXXXXXXXASTRRGGVAPRDGRGTPSSRSGSVVGRAKGRNGGGGGSRSREDAGGWPTEDGAEGGVAGVAGADGTASISAQGVMIPMDVIASTEVSPTFSTISSREQAERDRERLAAMDGGGDGGYRRSSWGVALPLSGTDDTPREHGGAHGARESGTGRRSRENSGWGLTSDDGGDWEQQRRWRSSLASSASGVWSDDGVHDXXXXXXXXXXXXXXMYSREEEDGDLSSSRSSISTGYESSAMWKGSEPRQPGTPAGEDQNGDVGGNGRGSGKYAPPSPAWPLQHPPVEQTPDAEL 2910
EE RVIVAS TTSDAVGAGSTSDAGYFTPPPSVGQGTTRKKS A+RGSPSYAD+DGSSSDDGS GS IR RRSRRGPTLAPALDSR DRDR QSAEAGETPEEAGTKRGGGRWKW STAASRAPGKFSRANGGGGCDGEA PSP SKHMQQPAAVAEPETLTQDSGKSN R PDG NSTGSGEG T +D+ LGG AA TTAVASST+P K+TPWSWKMLATRTST XXXXXXXXXXXXXXXXXXXXXX RT RATAPKEQE+RQSFVQP AA TTTAGRGARPSSVKQTAAXXXXXXXXXAGRTGVHVGYQKMRISSGG XXX LSRPPPAPGT+TPRYRGTVPNPAVGGTCE SKRG YGPRSPMPPPSPGGSSDGVAAPPLSEEGGVTPRQPQATATTPSGNGANG +GVVDVHLAEGEL+AGGWKHLDSAGGGSFEIDSRHS PNIATEK VTRAGEEKPEEQSGRTRDGFDSGFEATAVA KSDGGMTEREIIA AE AVASAKK AGTVDRATAPGTPP+FPVDTAELLSDAAAT PGTKGKA TRGVDRTGKVQLEGT AVTGG TR QCVEKE+L V+G+DGGSVSRT RDDNWW+QNAA+ALAISAE K TPGRSRS XXXXXXXXXXXXXXXX ASTRRGGVAPRDGRGTPSSRSGSVVGRAKG+NGGGGGSRSREDAGGWPTEDGAEGGVAGV GGGDGGYRRSSWGVALPLSGTDDTPREHGGAHGARESGTGRRSRE+SGWGL SDDGGDWEQQRRWRSS ASSASGVWSDDGVHD MYS EEED DL SSRSSISTGYESSAM KGSEPRQPGTPAGEDQ+ DVGG+ RGSGKYAPPSPAWPLQHPPV QTP L
Sbjct: 2 EEPRVIVASLTTSDAVGAGSTSDAGYFTPPPSVGQGTTRKKSPASRGSPSYADHDGSSSDDGSGGSSIRTRRSRRGPTLAPALDSRADRDRSQSAEAGETPEEAGTKRGGGRWKWTSTAASRAPGKFSRANGGGGCDGEAIPSPLSKHMQQPAAVAEPETLTQDSGKSNRRTPDGPNSTGSGEGSTAALDSILGGPAARTTAVASSTSPTKVTPWSWKMLATRTSTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSGRTGRATAPKEQESRQSFVQPPAAATTTAGRGARPSSVKQTAAXXXXXXXXXAGRTGVHVGYQKMRISSGGGNRAIACAAEXXXDEALSRPPPAPGTSTPRYRGTVPNPAVGGTCERSKRGEYGPRSPMPPPSPGGSSDGVAAPPLSEEGGVTPRQPQATATTPSGNGANGANGVVDVHLAEGELEAGGWKHLDSAGGGSFEIDSRHSXXXXXXXXXPNIATEKNVTRAGEEKPEEQSGRTRDGFDSGFEATAVARKSDGGMTEREIIAGAEVAVASAKKEAAGTVDRATAPGTPPKFPVDTAELLSDAAATAPGTKGKAGTRGVDRTGKVQLEGTVAVTGGGTRCQCVEKESLRVSGEDGGSVSRTVRDDNWWKQNAAKALAISAERKNTPGRSRSXXXXXXXXXXXXXXXXXXXS----------ASTRRGGVAPRDGRGTPSSRSGSVVGRAKGQNGGGGGSRSREDAGGWPTEDGAEGGVAGV--------------------------------------------------GGGDGGYRRSSWGVALPLSGTDDTPREHGGAHGARESGTGRRSRESSGWGLNSDDGGDWEQQRRWRSSRASSASGVWSDDGVHDYDHDDTGRSNASTSMYSDEEEDDDLPSSRSSISTGYESSAMGKGSEPRQPGTPAGEDQDDDVGGHDRGSGKYAPPSPAWPLQHPPVGQTPVGHL 915
BLAST of mRNA_Ecto-sp9_F_contig1248.1944.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G391_ECTSI) HSP 1 Score: 394 bits (1012), Expect = 6.940e-122 Identity = 221/234 (94.44%), Postives = 223/234 (95.30%), Query Frame = 1
Query: 5038 MDTPIGGAPGRAEKTRALGGSGGGPRDEGTSRPAAGEGGSATAGGGSVGPGTTAASGRKRISFPRSAFLGFSRSAQRSMSSYSFVQHDPASRAGGVGGGDGDGVGGVRASQSTTAAEADPGLAVDAGRGTLPATSVDFAGGGDEKANGSPKANRAAPRDNDGDGDVQYVNFNGHGGRAGGVVALRRGDGVAAVEIEGDRSVSTTGYSSSLKPLQAEQDEEEAKRKMDALLLRSR 5739
MD +GGAPGRAEKTRALGGSGGGPRDEGTSRPAAGEGGSATAG GSVGPGTTAASGRKRISFPRSAFLGFSRSAQRSMSSYSFVQHDPASRAGGVGGGDGDG GGVRASQST AAEA PGLAVDAGRGTLPATSVDFAGGG+EKANGSPK NRAAPRDN GDGDVQYVNFNGHGGRAGGVVALRRGDGVAAVEIEGDRSVSTTGYSS LKPLQAEQDEEEAKRKMDALLL R
Sbjct: 1 MDILVGGAPGRAEKTRALGGSGGGPRDEGTSRPAAGEGGSATAGSGSVGPGTTAASGRKRISFPRSAFLGFSRSAQRSMSSYSFVQHDPASRAGGVGGGDGDGAGGVRASQSTPAAEAGPGLAVDAGRGTLPATSVDFAGGGEEKANGSPKDNRAAPRDNGGDGDVQYVNFNGHGGRAGGVVALRRGDGVAAVEIEGDRSVSTTGYSSFLKPLQAEQDEEEAKRKMDALLLSGR 234 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1248.1944.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig1248.1944.1 >prot_Ecto-sp9_F_contig1248.1944.1 ID=prot_Ecto-sp9_F_contig1248.1944.1|Name=mRNA_Ecto-sp9_F_contig1248.1944.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=1798bp MQQPAAVAEPETLTQDSGKSNTRNPDGLNSTGSGEGRTTGVDATLGGSAAback to top mRNA from alignment at Ecto-sp9_F_contig1248:5873..21532+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig1248.1944.1 ID=mRNA_Ecto-sp9_F_contig1248.1944.1|Name=mRNA_Ecto-sp9_F_contig1248.1944.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=15660bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1248:5873..21532+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1248:5873..21532+ >mRNA_Ecto-sp9_F_contig1248.1944.1 ID=mRNA_Ecto-sp9_F_contig1248.1944.1|Name=mRNA_Ecto-sp9_F_contig1248.1944.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=10788bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1248:5873..21532+ (Ectocarpus species9 EcSCA_722f female)back to top |