mRNA_Ecto-sp9_F_contig12187.1753.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig12187.1753.1
Unique NamemRNA_Ecto-sp9_F_contig12187.1753.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig12187.1753.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ25_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 2.760e-16
Identity = 35/41 (85.37%), Postives = 38/41 (92.68%), Query Frame = 1 
Query:    1 MLPLLRRRAAKPRVLLAAVCRYNNKQDGAFLGYLPDKNAGV 123
            MLPLL+ RAAKPRVLLAA+ RYNNKQDG FLGYLP+KNAGV
Sbjct:    1 MLPLLKLRAAKPRVLLAAMSRYNNKQDGPFLGYLPEKNAGV 41
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BLAST of mRNA_Ecto-sp9_F_contig12187.1753.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1W5_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 1.070e-14
Identity = 36/41 (87.80%), Postives = 38/41 (92.68%), Query Frame = 1 
Query:    1 MLPLLRRRAAKPRVLLAAVCRYNNKQDGAFLGYLPDKNAGV 123
            MLPLL+RRAAKPRVLLAA+ RYN KQDG FLGYLPDKNAGV
Sbjct:  781 MLPLLKRRAAKPRVLLAAMSRYNEKQDGTFLGYLPDKNAGV 821
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BLAST of mRNA_Ecto-sp9_F_contig12187.1753.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L0_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 4.510e-13
Identity = 33/41 (80.49%), Postives = 38/41 (92.68%), Query Frame = 1 
Query:    1 MLPLLRRRAAKPRVLLAAVCRYNNKQDGAFLGYLPDKNAGV 123
            M+PLL+RRAAKPRVLLAA+ RYN KQDGAFLGYLP+K+ GV
Sbjct:  445 MVPLLKRRAAKPRVLLAALSRYNEKQDGAFLGYLPEKSTGV 485
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BLAST of mRNA_Ecto-sp9_F_contig12187.1753.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL58_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 2.610e-11
Identity = 32/41 (78.05%), Postives = 36/41 (87.80%), Query Frame = 1 
Query:    1 MLPLLRRRAAKPRVLLAAVCRYNNKQDGAFLGYLPDKNAGV 123
            M+PLL+RRAA  RVLLAA+ RYNNKQDGAFLGYLP+KN  V
Sbjct:  812 MVPLLKRRAATLRVLLAAMSRYNNKQDGAFLGYLPEKNVRV 852
[Close]
BLAST of mRNA_Ecto-sp9_F_contig12187.1753.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHQ8_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 8.160e-10
Identity = 34/52 (65.38%), Postives = 36/52 (69.23%), Query Frame = 1 
Query:    1 MLPLLRRRAAKPRVLLAAVCRYNNKQDGAFLGY-----------LPDKNAGV 123
            MLPLL+RRAAKPRVLLAA+ RYNNK DGAFLG            LP KNAG 
Sbjct:  391 MLPLLKRRAAKPRVLLAAMSRYNNKHDGAFLGXXXXXXXXXXXXLPGKNAGA 442
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BLAST of mRNA_Ecto-sp9_F_contig12187.1753.1 vs.
Match: EsV-1-1 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2C8_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 9.330e-10
Identity = 29/38 (76.32%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:    1 MLPLLRRRAAKPRVLLAAVCRYNNKQDGAFLGYLPDKN 114
            +LP L+RRA KP VLLAA+ RYNNKQDG FLGY PDKN
Sbjct:  149 VLPGLKRRATKPCVLLAALSRYNNKQDGPFLGYSPDKN 186
[Close]
BLAST of mRNA_Ecto-sp9_F_contig12187.1753.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNS0_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 1.110e-9
Identity = 29/40 (72.50%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:    1 MLPLLRRRAAKPRVLLAAVCRYNNKQDGAFLGYLPDKNAG 120
            MLP L+RRA KPRV LA + RYNNKQDG FLGY P KN G
Sbjct:  364 MLPGLKRRATKPRVALAPLSRYNNKQDGPFLGYTPSKNGG 403
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig12187.1753.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
Uncharacterized2.760e-1685.37protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.070e-1487.80protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized4.510e-1380.49protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.610e-1178.05protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized8.160e-1065.38protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
EsV-1-19.330e-1076.32n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7... [more]
Uncharacterized1.110e-972.50protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig12187contigEcto-sp9_F_contig12187:3020..3245 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size126
Cds size126
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928486.5922346-CDS-Ecto-sp9_F_contig12187:3019..30831622928486.5922346-CDS-Ecto-sp9_F_contig12187:3019..3083Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig12187 3020..3083 -
1692277887.859085-CDS-Ecto-sp9_F_contig12187:3019..30831692277887.859085-CDS-Ecto-sp9_F_contig12187:3019..3083Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig12187 3020..3083 -
1622928486.6033027-CDS-Ecto-sp9_F_contig12187:3183..32451622928486.6033027-CDS-Ecto-sp9_F_contig12187:3183..3245Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig12187 3184..3245 -
1692277887.8679178-CDS-Ecto-sp9_F_contig12187:3183..32451692277887.8679178-CDS-Ecto-sp9_F_contig12187:3183..3245Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig12187 3184..3245 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig12187.1753.1prot_Ecto-sp9_F_contig12187.1753.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig12187 3020..3245 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig12187.1753.1

>prot_Ecto-sp9_F_contig12187.1753.1 ID=prot_Ecto-sp9_F_contig12187.1753.1|Name=mRNA_Ecto-sp9_F_contig12187.1753.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=42bp
MLPLLRRRAAKPRVLLAAVCRYNNKQDGAFLGYLPDKNAGV*
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mRNA from alignment at Ecto-sp9_F_contig12187:3020..3245-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig12187.1753.1 ID=mRNA_Ecto-sp9_F_contig12187.1753.1|Name=mRNA_Ecto-sp9_F_contig12187.1753.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=226bp|location=Sequence derived from alignment at Ecto-sp9_F_contig12187:3020..3245- (Ectocarpus species9 EcSCA_722f female)
ATGCTCCCGCTTCTGCGGCGGAGGGCGGCAAAGCCTCGTGTGCTCTTGGC
AGCCGTGTGTAGGTGCGTGGTGGGTTTGATTCTTCGGTGTTTTCTGAAGA
CAACACACAAATTGAAAGAAGTTGGCTGATGCTTTTACCCGCCCCCCGTT
TGTTTTCGACAGGTACAACAACAAGCAGGACGGAGCTTTCCTCGGGTACC
TCCCGGACAAAAACGCGGGAGTGTAA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig12187:3020..3245-

>mRNA_Ecto-sp9_F_contig12187.1753.1 ID=mRNA_Ecto-sp9_F_contig12187.1753.1|Name=mRNA_Ecto-sp9_F_contig12187.1753.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=252bp|location=Sequence derived from alignment at Ecto-sp9_F_contig12187:3020..3245- (Ectocarpus species9 EcSCA_722f female)
ATGCTCCCGCTTCTGCGGCGGAGGGCGGCAAAGCCTCGTGTGCTCTTGGC
AGCCGTGTGTAGATGCTCCCGCTTCTGCGGCGGAGGGCGGCAAAGCCTCG
TGTGCTCTTGGCAGCCGTGTGTAGGTACAACAACAAGCAGGACGGAGCTT
TCCTCGGGTACCTCCCGGACAAAAACGCGGGAGTGTAAGTACAACAACAA
GCAGGACGGAGCTTTCCTCGGGTACCTCCCGGACAAAAACGCGGGAGTGT
AA
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