mRNA_Ecto-sp9_F_contig12131.1725.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig12131.1725.1
Unique NamemRNA_Ecto-sp9_F_contig12131.1725.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig12131.1725.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX74_ECTSI)

HSP 1 Score: 131 bits (329), Expect = 8.900e-33
Identity = 109/133 (81.95%), Postives = 111/133 (83.46%), Query Frame = 1 
Query:    4 RSAEATQTAAAAGMLPSLSPAIYAAAANALADVGEWGWCLVLLEELEQLDAEQDDDATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEQEAPENGRGDAAAPETVLRVELDESGALAAPAPATSEKEGSAP 402
            RSAEATQTAAAA MLPSLSPAIYAAAANALADVGEW WCLVLLEELEQLDAEQDD AT       XXXXXXXXXXXXXXXXXXXXXXX EQEAPE          TVLRVELDE+GALAAPA ATS+KEGSAP
Sbjct:  412 RSAEATQTAAAAEMLPSLSPAIYAAAANALADVGEWEWCLVLLEELEQLDAEQDDGATGATATSTXXXXXXXXXXXXXXXXXXXXXXXXEQEAPE----------TVLRVELDENGALAAPATATSQKEGSAP 534
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BLAST of mRNA_Ecto-sp9_F_contig12131.1725.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LGC4_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 1.470e-31
Identity = 101/114 (88.60%), Postives = 105/114 (92.11%), Query Frame = 1 
Query:   37 AGMLPSLSPAIYAAAANALADVGEWGWCLVLLEELEQLDAEQDDDATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEQEAPENGRGDAAAPETVLRVELDESGALAAPAPAT 378
            AGMLPSLSPAIYAAAANALADVGEW WCLVLLEELEQLDA+QDD+AT  XXXXXXXXXXXXXXXXXXXXXXXX    EE+E PE+GRGDAAAPETVLRVELDESGALAAPA AT
Sbjct:  671 AGMLPSLSPAIYAAAANALADVGEWEWCLVLLEELEQLDADQDDNATGAXXXXXXXXXXXXXXXXXXXXXXXXNIN-EEREVPEDGRGDAAAPETVLRVELDESGALAAPASAT 783
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig12131.1725.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized8.900e-3381.95protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.470e-3188.60protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig12131contigEcto-sp9_F_contig12131:982..1978 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score135.6
Seed ortholog evalue1.7e-29
Seed eggNOG ortholog2880.D7FX74
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size405
Cds size402
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928478.240988-CDS-Ecto-sp9_F_contig12131:982..13211622928478.240988-CDS-Ecto-sp9_F_contig12131:982..1321Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig12131 983..1321 -
1692277886.3307824-CDS-Ecto-sp9_F_contig12131:982..13211692277886.3307824-CDS-Ecto-sp9_F_contig12131:982..1321Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig12131 983..1321 -
1622928478.2523718-CDS-Ecto-sp9_F_contig12131:1915..19781622928478.2523718-CDS-Ecto-sp9_F_contig12131:1915..1978Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig12131 1916..1978 -
1692277886.3462756-CDS-Ecto-sp9_F_contig12131:1915..19781692277886.3462756-CDS-Ecto-sp9_F_contig12131:1915..1978Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig12131 1916..1978 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig12131.1725.1prot_Ecto-sp9_F_contig12131.1725.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig12131 983..1978 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig12131.1725.1

>prot_Ecto-sp9_F_contig12131.1725.1 ID=prot_Ecto-sp9_F_contig12131.1725.1|Name=mRNA_Ecto-sp9_F_contig12131.1725.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=134bp
ARSAEATQTAAAAGMLPSLSPAIYAAAANALADVGEWGWCLVLLEELEQL
DAEQDDDATGATATTTAAALNPQPPAGVALASAGDDNNGEEQEAPENGRG
DAAAPETVLRVELDESGALAAPAPATSEKEGSAP
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mRNA from alignment at Ecto-sp9_F_contig12131:982..1978-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig12131.1725.1 ID=mRNA_Ecto-sp9_F_contig12131.1725.1|Name=mRNA_Ecto-sp9_F_contig12131.1725.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=997bp|location=Sequence derived from alignment at Ecto-sp9_F_contig12131:982..1978- (Ectocarpus species9 EcSCA_722f female)
GCAAGGTCGGCGGAAGCCACGCAGACGGCCGCTGCAGCGGGGATGCTTCC
GTCTTTGTCGCCGGTGAGAGGGACCTAGCGCGGCGGCAGGAGGGCGGGGA
GGGGGGTCATGCGTCCCGTGCCTTTCGCACGCATGCGTTGTTGAGAGACT
GTTCGTTTACTCGGGGACATAGTTTCGTTCTTGTGTTGTCAGCTTCAGCC
TTCCCTAGTCGGTTTGTCTCTTGTTGTGTTGTACAGGGCCACGAGGGATG
ATCAATCCGCGGCGCTTTGCTGTCTCGCGAGTGGTGGCGCGCGCTCGCGC
TCGTGGGTGGGAGGGCTGGGGTTAGCCGGACTAGAGTCTACAGGGTGCGA
GCCTCGTTGCAAGCGGACAACGCACCATGATCGCAGCTCCGGGAACTTTC
GCTTCAATGGTACTTCTAGTGTATTCTACGACGGACTGACGTCGATTAAG
AGCCAAAACTAGAAGGCATGCGGTTGTGCTTCATTCAACCTCTTAGCTTG
TGCGTGTTACGCAGATGTCGCTGGACTCAAGATCCTGAGTTGTGAATCGC
CCACCGCCTTCCCCTCCGTCCCCCTGTTGTGTTTTGTTTTTCTTCTATCG
CCACCGTGCAAAAAAAACTGCCTGCCATCCATCAAAACCCGTGTCCCGGG
TGTGTAGGCGATCTACGCCGCCGCGGCGAACGCCCTGGCTGACGTGGGGG
AGTGGGGGTGGTGCCTGGTTCTGCTCGAAGAGCTGGAACAGCTGGACGCG
GAGCAAGACGACGATGCGACGGGCGCTACTGCTACTACTACGGCCGCAGC
ACTCAACCCACAACCACCCGCAGGAGTAGCACTAGCCAGCGCTGGCGACG
ACAACAACGGCGAAGAACAAGAAGCCCCAGAAAACGGGCGAGGAGACGCC
GCCGCCCCTGAAACGGTGCTCCGTGTGGAGTTGGACGAGAGCGGCGCCCT
GGCCGCCCCCGCCCCCGCTACCTCCGAGAAGGAGGGGTCGGCGCCGG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig12131:982..1978-

>mRNA_Ecto-sp9_F_contig12131.1725.1 ID=mRNA_Ecto-sp9_F_contig12131.1725.1|Name=mRNA_Ecto-sp9_F_contig12131.1725.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=804bp|location=Sequence derived from alignment at Ecto-sp9_F_contig12131:982..1978- (Ectocarpus species9 EcSCA_722f female)
GCAAGGTCGGCGGAAGCCACGCAGACGGCCGCTGCAGCGGGGATGCTTCC
GTCTTTGTCGCCGGCAAGGTCGGCGGAAGCCACGCAGACGGCCGCTGCAG
CGGGGATGCTTCCGTCTTTGTCGCCGGCGATCTACGCCGCCGCGGCGAAC
GCCCTGGCTGACGTGGGGGAGTGGGGGTGGTGCCTGGTTCTGCTCGAAGA
GCTGGAACAGCTGGACGCGGAGCAAGACGACGATGCGACGGGCGCTACTG
CTACTACTACGGCCGCAGCACTCAACCCACAACCACCCGCAGGAGTAGCA
CTAGCCAGCGCTGGCGACGACAACAACGGCGAAGAACAAGAAGCCCCAGA
AAACGGGCGAGGAGACGCCGCCGCCCCTGAAACGGTGCTCCGTGTGGAGT
TGGACGAGAGCGGCGCCCTGGCCGCCCCCGCCCCCGCTACCTCCGAGAAG
GAGGGGTCGGCGCCGGCGATCTACGCCGCCGCGGCGAACGCCCTGGCTGA
CGTGGGGGAGTGGGGGTGGTGCCTGGTTCTGCTCGAAGAGCTGGAACAGC
TGGACGCGGAGCAAGACGACGATGCGACGGGCGCTACTGCTACTACTACG
GCCGCAGCACTCAACCCACAACCACCCGCAGGAGTAGCACTAGCCAGCGC
TGGCGACGACAACAACGGCGAAGAACAAGAAGCCCCAGAAAACGGGCGAG
GAGACGCCGCCGCCCCTGAAACGGTGCTCCGTGTGGAGTTGGACGAGAGC
GGCGCCCTGGCCGCCCCCGCCCCCGCTACCTCCGAGAAGGAGGGGTCGGC
GCCG
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