mRNA_Ecto-sp9_F_contig12060.1664.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig12060.1664.1
Unique NamemRNA_Ecto-sp9_F_contig12060.1664.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig12060.1664.1 vs.
Match: MEKK (and related serine/threonine protein kinases amardillo repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLC1_ECTSI)

HSP 1 Score: 147 bits (370), Expect = 2.520e-39
Identity = 74/76 (97.37%), Postives = 76/76 (100.00%), Query Frame = 1 
Query:    1 QALGSSATFIVEVMERLHYPKAVVGKTLLGMLRMIHHQHPDPAALVRDFDLYRIVLTLSRNESQVLVAELAGQLLQ 228
            +ALGSSATFIVEVMERLHYPKAVVGKTLLGMLRMIHHQHPDPAALVRDFDLYRIVLTL+RNESQVLVAELAGQLLQ
Sbjct: 1191 KALGSSATFIVEVMERLHYPKAVVGKTLLGMLRMIHHQHPDPAALVRDFDLYRIVLTLARNESQVLVAELAGQLLQ 1266
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BLAST of mRNA_Ecto-sp9_F_contig12060.1664.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZS1_9PHAE)

HSP 1 Score: 144 bits (363), Expect = 2.210e-38
Identity = 73/76 (96.05%), Postives = 74/76 (97.37%), Query Frame = 1 
Query:    1 QALGSSATFIVEVMERLHYPKAVVGKTLLGMLRMIHHQHPDPAALVRDFDLYRIVLTLSRNESQVLVAELAGQLLQ 228
            +ALGSSATFIVEVMERLHYPKAVVGKTLL MLRMIHHQHPDPA LVRDFDLYRIVLTLSRNESQVLVAELAGQLLQ
Sbjct:  915 KALGSSATFIVEVMERLHYPKAVVGKTLLSMLRMIHHQHPDPATLVRDFDLYRIVLTLSRNESQVLVAELAGQLLQ 990
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BLAST of mRNA_Ecto-sp9_F_contig12060.1664.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C999_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 2.800e-19
Identity = 45/76 (59.21%), Postives = 55/76 (72.37%), Query Frame = 1 
Query:    1 QALGSSATFIVEVMERLHYPKAVVGKTLLGMLRMIHHQHPDPAALVRDFDLYRIVLTLSRNESQVLVAELAGQLLQ 228
            +A G S  F+ EV  RLHYPKA+VGKTLL MLR+I+  HP P  L R F+LY  V+ L+RN +QVLVAE+A  LLQ
Sbjct:  213 KAFGVSEVFVQEVKARLHYPKAMVGKTLLAMLRLIYRNHPKPRELDRRFNLYPTVVKLARNNAQVLVAEMATLLLQ 288
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BLAST of mRNA_Ecto-sp9_F_contig12060.1664.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AJ11_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 9.130e-12
Identity = 32/76 (42.11%), Postives = 50/76 (65.79%), Query Frame = 1 
Query:    1 QALGSSATFIVEVMERLHYPKAVVGKTLLGMLRMIHHQHPDPAALVRDFDLYRIVLTLSRNESQVLVAELAGQLLQ 228
            QALG S+ F++E++ RL YPK  V K LL ML+ I   H  P   + +F+++  +L L++  +Q+L+ E+A QLLQ
Sbjct:  452 QALGRSSLFVMEILYRLSYPKPFVRKNLLKMLKCIFESHTAPVQFLVEFNIHPTILALAQETNQILIQEIASQLLQ 527
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BLAST of mRNA_Ecto-sp9_F_contig12060.1664.1 vs.
Match: Protein (kinase domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6V6G2_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 9.190e-12
Identity = 32/76 (42.11%), Postives = 50/76 (65.79%), Query Frame = 1 
Query:    1 QALGSSATFIVEVMERLHYPKAVVGKTLLGMLRMIHHQHPDPAALVRDFDLYRIVLTLSRNESQVLVAELAGQLLQ 228
            QALG S+ F++E++ RL YPK  V K LL ML+ I   H  P   + +F+++  +L L++  +Q+L+ E+A QLLQ
Sbjct:  529 QALGRSSLFVMEILYRLSYPKPFVRKNLLKMLKCIFESHTAPVQFLVEFNIHPTILALAQETNQILIQEIASQLLQ 604
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BLAST of mRNA_Ecto-sp9_F_contig12060.1664.1 vs.
Match: Protein (kinase domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418ER06_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 9.260e-12
Identity = 32/76 (42.11%), Postives = 50/76 (65.79%), Query Frame = 1 
Query:    1 QALGSSATFIVEVMERLHYPKAVVGKTLLGMLRMIHHQHPDPAALVRDFDLYRIVLTLSRNESQVLVAELAGQLLQ 228
            QALG S+ F++E++ RL YPK  V K LL ML+ I   H  P   + +F+++  +L L++  +Q+L+ E+A QLLQ
Sbjct:  676 QALGRSSLFVMEILYRLSYPKPFVRKNLLKMLKCIFESHTAPVQFLVEFNIHPTILALAQETNQILIQEIASQLLQ 751
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BLAST of mRNA_Ecto-sp9_F_contig12060.1664.1 vs.
Match: Protein (kinase domain-containing protein n=7 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397E9R6_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 9.280e-12
Identity = 32/76 (42.11%), Postives = 50/76 (65.79%), Query Frame = 1 
Query:    1 QALGSSATFIVEVMERLHYPKAVVGKTLLGMLRMIHHQHPDPAALVRDFDLYRIVLTLSRNESQVLVAELAGQLLQ 228
            QALG S+ F++E++ RL YPK  V K LL ML+ I   H  P   + +F+++  +L L++  +Q+L+ E+A QLLQ
Sbjct:  718 QALGRSSLFVMEILYRLSYPKPFVRKNLLKMLKCIFESHTAPVQFLVEFNIHPTILALAQETNQILIQEIASQLLQ 793
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BLAST of mRNA_Ecto-sp9_F_contig12060.1664.1 vs.
Match: Uncharacterized (protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397FEI7_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 9.300e-12
Identity = 32/76 (42.11%), Postives = 50/76 (65.79%), Query Frame = 1 
Query:    1 QALGSSATFIVEVMERLHYPKAVVGKTLLGMLRMIHHQHPDPAALVRDFDLYRIVLTLSRNESQVLVAELAGQLLQ 228
            QALG S+ F++E++ RL YPK  V K LL ML+ I   H  P   + +F+++  +L L++  +Q+L+ E+A QLLQ
Sbjct:  777 QALGRSSLFVMEILYRLSYPKPFVRKNLLKMLKCIFESHTAPVQFLVEFNIHPTILALAQETNQILIQEIASQLLQ 852
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BLAST of mRNA_Ecto-sp9_F_contig12060.1664.1 vs.
Match: STE/STE11/CDC15 (protein kinase n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FCP3_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 9.340e-12
Identity = 32/76 (42.11%), Postives = 50/76 (65.79%), Query Frame = 1 
Query:    1 QALGSSATFIVEVMERLHYPKAVVGKTLLGMLRMIHHQHPDPAALVRDFDLYRIVLTLSRNESQVLVAELAGQLLQ 228
            QALG S+ F++E++ RL YPK  V K LL ML+ I   H  P   + +F+++  +L L++  +Q+L+ E+A QLLQ
Sbjct:  921 QALGRSSLFVMEILYRLSYPKPFVRKNLLKMLKCIFESHTAPVQFLVEFNIHPTILALAQETNQILIQEIASQLLQ 996
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BLAST of mRNA_Ecto-sp9_F_contig12060.1664.1 vs.
Match: STE/STE11/CDC15 (protein kinase n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TGX3_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 2.380e-11
Identity = 31/76 (40.79%), Postives = 50/76 (65.79%), Query Frame = 1 
Query:    1 QALGSSATFIVEVMERLHYPKAVVGKTLLGMLRMIHHQHPDPAALVRDFDLYRIVLTLSRNESQVLVAELAGQLLQ 228
            QALG S+ F++E++ RL YPK  V K LL ML+ I   H  P   + +++++ I+  L++  +Q+L+ E+A QLLQ
Sbjct:  923 QALGRSSLFVMEILFRLSYPKPFVRKNLLKMLKCIFESHTSPVQFLVEYNIHPIIHALAQENNQILIQEIASQLLQ 998
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig12060.1664.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
MEKK2.520e-3997.37and related serine/threonine protein kinases amard... [more]
Uncharacterized2.210e-3896.05protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.800e-1959.21protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Uncharacterized9.130e-1242.11protein (Fragment) n=1 Tax=Aphanomyces astaci TaxI... [more]
Protein9.190e-1242.11kinase domain-containing protein n=2 Tax=Aphanomyc... [more]
Protein9.260e-1242.11kinase domain-containing protein n=1 Tax=Aphanomyc... [more]
Protein9.280e-1242.11kinase domain-containing protein n=7 Tax=Aphanomyc... [more]
Uncharacterized9.300e-1242.11protein n=2 Tax=Aphanomyces astaci TaxID=112090 Re... [more]
STE/STE11/CDC159.340e-1242.11protein kinase n=4 Tax=Aphanomyces astaci TaxID=11... [more]
STE/STE11/CDC152.380e-1140.79protein kinase n=2 Tax=Aphanomyces invadans TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig12060contigEcto-sp9_F_contig12060:3380..3607 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score147.9
Seed ortholog evalue1.9e-33
Seed eggNOG ortholog2880.D8LLC1
Preferred nameCDC15
KEGG koko:K06683
KEGG Pathwayko04111,ko04113,ko04392,map04111,map04113,map04392
EggNOG free text desc.MAP kinase kinase kinase activity
EggNOG OGsKOG0198@1,KOG0198@2759
EC2.7.11.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size228
Cds size228
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928469.2500892-CDS-Ecto-sp9_F_contig12060:3379..36071622928469.2500892-CDS-Ecto-sp9_F_contig12060:3379..3607Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig12060 3380..3607 +
1692277882.8777897-CDS-Ecto-sp9_F_contig12060:3379..36071692277882.8777897-CDS-Ecto-sp9_F_contig12060:3379..3607Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig12060 3380..3607 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig12060.1664.1prot_Ecto-sp9_F_contig12060.1664.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig12060 3380..3607 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig12060.1664.1

>prot_Ecto-sp9_F_contig12060.1664.1 ID=prot_Ecto-sp9_F_contig12060.1664.1|Name=mRNA_Ecto-sp9_F_contig12060.1664.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=76bp
QALGSSATFIVEVMERLHYPKAVVGKTLLGMLRMIHHQHPDPAALVRDFD
LYRIVLTLSRNESQVLVAELAGQLLQ
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mRNA from alignment at Ecto-sp9_F_contig12060:3380..3607+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig12060.1664.1 ID=mRNA_Ecto-sp9_F_contig12060.1664.1|Name=mRNA_Ecto-sp9_F_contig12060.1664.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=228bp|location=Sequence derived from alignment at Ecto-sp9_F_contig12060:3380..3607+ (Ectocarpus species9 EcSCA_722f female)
CAGGCGCTCGGCTCGTCCGCGACGTTCATCGTGGAGGTCATGGAGCGTCT
CCACTACCCCAAGGCCGTCGTCGGGAAGACCCTGCTGGGCATGCTCCGCA
TGATCCACCACCAACACCCGGACCCGGCCGCCCTGGTGCGCGACTTCGAC
CTCTACCGCATCGTGCTAACCCTGTCCAGGAACGAGTCTCAGGTTCTTGT
GGCCGAGCTCGCCGGACAGCTCCTGCAA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig12060:3380..3607+

>mRNA_Ecto-sp9_F_contig12060.1664.1 ID=mRNA_Ecto-sp9_F_contig12060.1664.1|Name=mRNA_Ecto-sp9_F_contig12060.1664.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=456bp|location=Sequence derived from alignment at Ecto-sp9_F_contig12060:3380..3607+ (Ectocarpus species9 EcSCA_722f female)
CAGGCGCTCGGCTCGTCCGCGACGTTCATCGTGGAGGTCATGGAGCGTCT
CCACTACCCCAAGGCCGTCGTCGGGAAGACCCTGCTGGGCATGCTCCGCA
TGATCCACCACCAACACCCGGACCCGGCCGCCCTGGTGCGCGACTTCGAC
CTCTACCGCATCGTGCTAACCCTGTCCAGGAACGAGTCTCAGGTTCTTGT
GGCCGAGCTCGCCGGACAGCTCCTGCAACAGGCGCTCGGCTCGTCCGCGA
CGTTCATCGTGGAGGTCATGGAGCGTCTCCACTACCCCAAGGCCGTCGTC
GGGAAGACCCTGCTGGGCATGCTCCGCATGATCCACCACCAACACCCGGA
CCCGGCCGCCCTGGTGCGCGACTTCGACCTCTACCGCATCGTGCTAACCC
TGTCCAGGAACGAGTCTCAGGTTCTTGTGGCCGAGCTCGCCGGACAGCTC
CTGCAA
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