mRNA_Ecto-sp9_F_contig12054.1658.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig12054.1658.1
Unique NamemRNA_Ecto-sp9_F_contig12054.1658.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig12054.1658.1 vs.
Match: Myb-like (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FME7_ECTSI)

HSP 1 Score: 201 bits (512), Expect = 1.420e-57
Identity = 103/104 (99.04%), Postives = 103/104 (99.04%), Query Frame = 2 
Query:   65 GALLSAGQAEAQKEEFWRGHVKDLELSVPERLEKYSGKLAKLGRAVARLAAAGKKVLVLGALPDARLLVHQYLVETDVPHECWAGNGEMFPNVAEEESTRGSDA 376
            GALLSAGQAEAQKEEFWRGHVKDLELSVPERLEKYSGKLAKLGRAVARLAAAGKKVLVLGALPDARLLVHQYLVETDVPHECWAGNGEMFPNVAEEESTRG DA
Sbjct: 1311 GALLSAGQAEAQKEEFWRGHVKDLELSVPERLEKYSGKLAKLGRAVARLAAAGKKVLVLGALPDARLLVHQYLVETDVPHECWAGNGEMFPNVAEEESTRGVDA 1414
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig12054.1658.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Myb-like1.420e-5799.04domain-containing protein n=1 Tax=Ectocarpus silic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig12054contigEcto-sp9_F_contig12054:338..2927 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size380
Cds size378
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig12054.1658.1prot_Ecto-sp9_F_contig12054.1658.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig12054 339..2927 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928468.1828108-CDS-Ecto-sp9_F_contig12054:338..3991622928468.1828108-CDS-Ecto-sp9_F_contig12054:338..399Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig12054 339..399 -
1692277882.4575787-CDS-Ecto-sp9_F_contig12054:338..3991692277882.4575787-CDS-Ecto-sp9_F_contig12054:338..399Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig12054 339..399 -
1622928468.1985161-CDS-Ecto-sp9_F_contig12054:877..9651622928468.1985161-CDS-Ecto-sp9_F_contig12054:877..965Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig12054 878..965 -
1692277882.4677768-CDS-Ecto-sp9_F_contig12054:877..9651692277882.4677768-CDS-Ecto-sp9_F_contig12054:877..965Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig12054 878..965 -
1622928468.213852-CDS-Ecto-sp9_F_contig12054:1915..20141622928468.213852-CDS-Ecto-sp9_F_contig12054:1915..2014Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig12054 1916..2014 -
1692277882.4766881-CDS-Ecto-sp9_F_contig12054:1915..20141692277882.4766881-CDS-Ecto-sp9_F_contig12054:1915..2014Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig12054 1916..2014 -
1622928468.228644-CDS-Ecto-sp9_F_contig12054:2797..29271622928468.228644-CDS-Ecto-sp9_F_contig12054:2797..2927Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig12054 2798..2927 -
1692277882.485853-CDS-Ecto-sp9_F_contig12054:2797..29271692277882.485853-CDS-Ecto-sp9_F_contig12054:2797..2927Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig12054 2798..2927 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig12054.1658.1

>prot_Ecto-sp9_F_contig12054.1658.1 ID=prot_Ecto-sp9_F_contig12054.1658.1|Name=mRNA_Ecto-sp9_F_contig12054.1658.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=126bp
GGAAGPAASGVDRRPREAAAPRRPAVRRAGGGSEGGVLEGARQGLGTQRS
GTIREVLWQAGQAWQGCGATRRSGKEGAGPGGTARRSFAGAPVPRGDGRA
SRVLGRQRRDVPERRRRGEHERFGRG
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mRNA from alignment at Ecto-sp9_F_contig12054:338..2927-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig12054.1658.1 ID=mRNA_Ecto-sp9_F_contig12054.1658.1|Name=mRNA_Ecto-sp9_F_contig12054.1658.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2590bp|location=Sequence derived from alignment at Ecto-sp9_F_contig12054:338..2927- (Ectocarpus species9 EcSCA_722f female)
GGAGGCGCTGCTGGCCCTGCGGCGAGCGGCGTTGACCGGCGCCCTCGAGA
AGCCGCCGCCCCCCGGCGCCCTGCTGTCCGCCGGGCAGGCGGAGGCTCAG
AAGGAGGAGTTTTGGAGGGGGCACGTCAAGGTGGGTTGGATTGAGATTGA
GGTCAAGGTTTGTATGCATAGATGCATAGAGGGTGTTTGTTTTTGTTTGT
TTTTTGGGGGGGGGTGTTCTGATCAGGGGAGGCTCAGAAGGAGTTGTGGA
GAGGGCATGTCAAGGTGGGTTGGGTTGATTTGGGATTGAGATTGAGGTCA
AGGTTTGTATGCATAGATGCATAGAGGGTGTTTTTTTTTGGGGGAGGGGG
GATTCTGGTCAGGGAGGGCTCAGAGGGAGGAGTTTTGGAGGGGGGCACGT
CAAGATGGGTTGGTGTTGGGATCGGGATACATGCGGGTTTATAGAGAATT
TTGGGGCGGGGTTGTTGCGGTCAGGAAAGGCCCAGCAGGAGGAGTTTTGG
AGGAGGTATACGTCTTGGATTGAGATTGAGCCCGGGATACATGCGGGTTT
ATAGATTTTTTGTGTGTGTGTGTGTTTTTTTGTTTTAGAGAGGACACACA
CAACGAGAACAGAAGGACTACACACCCGTTCGATATTTTTTGTCGGCAGG
GGTGGTGTGAAAGTTCGGAGGCCAAAATGGAATGACACCTTGCCGAAAAC
TGGAAACACGTGACCCTGCTGAAAGTCCTTGCGTTACTCCTGCAATGCCA
GAACATGTCTATTGCTATAGCTTTCATGTCTCACGTGTTTGGACCGTCCT
TCTGTGTTCCTTTTTTCTTTTGCTGGAGTTGGAACTCCGTCCTTCCTAGT
TTTTCACATGGTTCGTTTATCTTTTTTCCTATCTTGTTTGTTTGCTTGTT
TGTTTTTTTGCAGGACTTGGAACTCAGCGTTCCGGAACGATTAGAGAAGT
ACTCTGGCAAGCTGGCCAAGCTTGGCAGGGCTGTGGCGCGACTCGCCGCA
GCGGGAAAGAAGGTAGATACGAGGCGACACGACCCGTGGGAAAAGAAGTT
TGCCGAACGCTGAAGAACCTCTTTCTTTGCCCGAGGAGACTCGTTTCTTT
TGTTCTCTGGGGTAACAATTTATCCTACTTGTGTCTTTTTCCCCCCTGGG
GTAGTATTTTATCCTTTTATTTCTCACTTCTCTGGGGTATTTAATAGTTT
AACCTATTTTATGGTCCATGCACAACAATTTTTGTCCATTCGCGTCTCGT
GCGATATGTTACTTGAAAGAAAACGAATTGAAATTTGAAACATTATGGGG
TCTTTTTTTGGGAGGCTCGCCGTCTCGGGGAAGGAAGGTTGTATGCATAC
TTGTTTAGTGCTATCCTGTTGGAACTTGCTGTCTACCAATGGCCTAACTA
CCGCACAGAAGGCGCCAGCACCAAGAAGCCGTTGTCATCCCGAGGATGCT
CTTTTATTTGGTTTGTGCGCGGGGTAGTATAACAACGCAACATCGACTAC
AAATAGTCTTTTCATCTAGTATATGTGCTGGTTATCTTGTGAAGTGTTAC
GTGGCTCTGATGGTTGGATACACATCACGTGATGTCACGATCGACTGTAC
CCCCCCTCCCCCCCAAGCGTTAAGTGTTTCGGCAAAGTGTGCTTCTTCTT
GTCTACACAGGAATGCAATCAACCAATCAAATCGACCGATTCCCTCCTTT
CACCGCTGGAACCCATCGCCTATTAGTCCTTTTCCGTGTCATGTTTGCCT
GCTGTGTCTCTGTTCCTTCGTAGCTGCTGGTTCTAGGGGCACGATAGTGC
CGGTTTATTTCCATCACCCCTTGGGAGCCATGGCCCAATCGTTTGGCCGC
GTTTGTATTGCTTACTTGTTCGCTGTGAAGGTGCTGGTTCCCTTCCTCCC
CTGGAACCGAATCGTCTTGGGCGTTTGTTTTTCTTGCTGTGATATGTTCG
TTTCGTGTGTAGGTGCTGGTCCTGGGGGCACTGCCAGACGCTCGTTTGCT
GGTGCACCAGTACCTCGTGGAGACGGACGTGCCTCACGAGTGCTGGGCAG
GTGTGGTGATCCCCAAAGAAGCGGATCCTTTCCGAAAACGTGCAGCAGTC
ACCGTTCGAGTCTGTGGCATCCTCTTCGTCCTGCCGCAGTTTTTTTTCTT
TTTTTATGCCTGGCGTTCGGTCTTGATGTGATCATGTGGAGTAGTAGTTG
GGCATTGGTATGTGGAAGGTTGGAAAGCTTTTGAGAGCGGAGCATTTTGC
TTGGCGTTGACGTGTGTTTTTTGCTTCTCAGCTGGCACTGACTCGTAGCC
AAGTTCAAGACAAGGCAGTGGTCTGCGTGAAGCTGCAGCTGTGTGTATTT
TCCCCGCCACAATTTTTTTTGCAGAACGAAAAAGTGGGAGTTGTTTCATG
TTCGTCGCCCTTACCTCCCCAAAAAGAAGATAAGGGTTACCCTTTGTCCA
CCGCCACGCACTTGCCTCCCTTCTCCCCTCGTCTCTCGTCGGTAAATACA
TTCTCGATCAACGTTTCGAAAACCAAAGGCAACGGAGAGATGTTCCCGAA
CGTCGCCGAAGAGGAGAGCACGAGAGGTTCGGACGCGGGC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig12054:338..2927-

>mRNA_Ecto-sp9_F_contig12054.1658.1 ID=mRNA_Ecto-sp9_F_contig12054.1658.1|Name=mRNA_Ecto-sp9_F_contig12054.1658.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=756bp|location=Sequence derived from alignment at Ecto-sp9_F_contig12054:338..2927- (Ectocarpus species9 EcSCA_722f female)
GGAGGCGCTGCTGGCCCTGCGGCGAGCGGCGTTGACCGGCGCCCTCGAGA
AGCCGCCGCCCCCCGGCGCCCTGCTGTCCGCCGGGCAGGCGGAGGCTCAG
AAGGAGGAGTTTTGGAGGGGGCACGTCAAGGGAGGCGCTGCTGGCCCTGC
GGCGAGCGGCGTTGACCGGCGCCCTCGAGAAGCCGCCGCCCCCCGGCGCC
CTGCTGTCCGCCGGGCAGGCGGAGGCTCAGAAGGAGGAGTTTTGGAGGGG
GCACGTCAAGGACTTGGAACTCAGCGTTCCGGAACGATTAGAGAAGTACT
CTGGCAAGCTGGCCAAGCTTGGCAGGGCTGTGGCGCGACTCGCCGCAGCG
GGAAAGAAGGACTTGGAACTCAGCGTTCCGGAACGATTAGAGAAGTACTC
TGGCAAGCTGGCCAAGCTTGGCAGGGCTGTGGCGCGACTCGCCGCAGCGG
GAAAGAAGGTGCTGGTCCTGGGGGCACTGCCAGACGCTCGTTTGCTGGTG
CACCAGTACCTCGTGGAGACGGACGTGCCTCACGAGTGCTGGGCAGGTGC
TGGTCCTGGGGGCACTGCCAGACGCTCGTTTGCTGGTGCACCAGTACCTC
GTGGAGACGGACGTGCCTCACGAGTGCTGGGCAGGCAACGGAGAGATGTT
CCCGAACGTCGCCGAAGAGGAGAGCACGAGAGGTTCGGACGCGGGGCAAC
GGAGAGATGTTCCCGAACGTCGCCGAAGAGGAGAGCACGAGAGGTTCGGA
CGCGGG
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