mRNA_Ecto-sp9_F_contig12018.1632.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig12018.1632.1
Unique NamemRNA_Ecto-sp9_F_contig12018.1632.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig12018.1632.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD91_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 2.680e-14
Identity = 29/30 (96.67%), Postives = 30/30 (100.00%), Query Frame = 1 
Query:    1 RRYCLSCGCEPFFFERCVPTKGAHHLHIQA 90
            +RYCLSCGCEPFFFERCVPTKGAHHLHIQA
Sbjct:  323 KRYCLSCGCEPFFFERCVPTKGAHHLHIQA 352
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig12018.1632.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized2.680e-1496.67protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig12018contigEcto-sp9_F_contig12018:3456..3560 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.3
Seed ortholog evalue1.2e-11
Seed eggNOG ortholog2880.D8LD91
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.DNA binding
EggNOG OGsKOG2476@1,KOG2476@2759
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size105
Cds size105
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928464.9110763-CDS-Ecto-sp9_F_contig12018:3455..35601622928464.9110763-CDS-Ecto-sp9_F_contig12018:3455..3560Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig12018 3456..3560 -
1692277881.0387678-CDS-Ecto-sp9_F_contig12018:3455..35601692277881.0387678-CDS-Ecto-sp9_F_contig12018:3455..3560Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig12018 3456..3560 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig12018.1632.1prot_Ecto-sp9_F_contig12018.1632.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig12018 3456..3560 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig12018.1632.1

>prot_Ecto-sp9_F_contig12018.1632.1 ID=prot_Ecto-sp9_F_contig12018.1632.1|Name=mRNA_Ecto-sp9_F_contig12018.1632.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=35bp
RRYCLSCGCEPFFFERCVPTKGAHHLHIQASTRG*
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mRNA from alignment at Ecto-sp9_F_contig12018:3456..3560-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig12018.1632.1 ID=mRNA_Ecto-sp9_F_contig12018.1632.1|Name=mRNA_Ecto-sp9_F_contig12018.1632.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=105bp|location=Sequence derived from alignment at Ecto-sp9_F_contig12018:3456..3560- (Ectocarpus species9 EcSCA_722f female)
CGCAGGTATTGCCTCAGCTGCGGGTGCGAACCGTTCTTCTTCGAGCGCTG
CGTCCCCACCAAGGGGGCTCATCACCTGCACATTCAGGCAAGCACACGGG
GTTAA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig12018:3456..3560-

>mRNA_Ecto-sp9_F_contig12018.1632.1 ID=mRNA_Ecto-sp9_F_contig12018.1632.1|Name=mRNA_Ecto-sp9_F_contig12018.1632.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=210bp|location=Sequence derived from alignment at Ecto-sp9_F_contig12018:3456..3560- (Ectocarpus species9 EcSCA_722f female)
CGCAGGTATTGCCTCAGCTGCGGGTGCGAACCGTTCTTCTTCGAGCGCTG
CGTCCCCACCAAGGGGGCTCATCACCTGCACATTCAGGCAAGCACACGGG
GTTAACGCAGGTATTGCCTCAGCTGCGGGTGCGAACCGTTCTTCTTCGAG
CGCTGCGTCCCCACCAAGGGGGCTCATCACCTGCACATTCAGGCAAGCAC
ACGGGGTTAA
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