mRNA_Ecto-sp9_F_contig1201.1629.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1201.1629.1
Unique NamemRNA_Ecto-sp9_F_contig1201.1629.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig1201.1629.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKP8_ECTSI)

HSP 1 Score: 550 bits (1416), Expect = 1.450e-195
Identity = 308/334 (92.22%), Postives = 312/334 (93.41%), Query Frame = 3 
Query:   45 MSTTGKLSSYFTKRREVTSSRAGPEELHVGSSSSSGSVRARLEKKLQVKQKTGFAFNFAVDSDADEQRQGGGQEGGDAGERGSFCFNFNPADASDATTRVPESNGARRRSGDASSLRAAQDFLTVVEKSGTQPSGKKKRTGAXXXXXXXXXD-GKGEARQSRERKSHDPVGEGPEQEIVVDCPAISSHGTVGDGGGEATSSAVASLPAAAASDSRSKREHRQRPPGLRPPPGFTLESWKDPAITGEERRRRRFGSGVRNMVAIQRSCDARRGLIPDGEVGEEKLPERQGEGLGRPGCDRARGMVGAGAPGSTTGGGSSVFAFGFDIGISFDGGS 1043
            MSTTG LSSYFTKRREV SSRAGPEELHV SSSSSGSVRARLEKKLQVKQKTGFAFNFAVDSDADEQRQGGGQEGGDAGERGSFCFNFNPADAS A T VPESNGA+RRSGDASSLRAAQDFLTVVEKSG QPSGKKKRTG XXXXXXXXX  GKGEA+QSRE+KS DPVGEGPEQ+ VVDCP  S H TVGDGGGEATSSAVASLPAA   DS  KREHRQRPPGLRPPPGFTLESWKDPAITGEERRRRRFGSGVRNMVAIQRSCDARRGLIPDGEVGEEKLPERQG GLGRPGCDRARGMVGAGAPGSTTGGGSSVFAFGFDIGISFDGGS
Sbjct:    1 MSTTGTLSSYFTKRREVKSSRAGPEELHVDSSSSSGSVRARLEKKLQVKQKTGFAFNFAVDSDADEQRQGGGQEGGDAGERGSFCFNFNPADAS-APTCVPESNGAKRRSGDASSLRAAQDFLTVVEKSGAQPSGKKKRTGXXXXXXXXXXXXGKGEAQQSREQKSQDPVGEGPEQDNVVDCPTFSGHCTVGDGGGEATSSAVASLPAAXXXDSSPKREHRQRPPGLRPPPGFTLESWKDPAITGEERRRRRFGSGVRNMVAIQRSCDARRGLIPDGEVGEEKLPERQGGGLGRPGCDRARGMVGAGAPGSTTGGGSSVFAFGFDIGISFDGGS 333
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BLAST of mRNA_Ecto-sp9_F_contig1201.1629.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBN0_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 2.790e-6
Identity = 29/57 (50.88%), Postives = 38/57 (66.67%), Query Frame = 3 
Query:  732 PGFTLESWKDPAITGEERRRRRFGSGVRNMVAIQRSCDARRGLIPDGEVGEEKLPER 902
            PG +LESWKDP +T  ERR+ R+GSGVRN+ AIQR   A  G     E G+ + P++
Sbjct:  122 PGLSLESWKDPTLTEAERRKLRYGSGVRNIAAIQRRTKAV-GAATSQEPGDAEPPQQ 177
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1201.1629.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.450e-19592.22protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKP8... [more]
Uncharacterized2.790e-650.88protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1201contigEcto-sp9_F_contig1201:20343..23255 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-21_001670.2
Exons2
Model size1043
Cds size534
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1201.1629.1prot_Ecto-sp9_F_contig1201.1629.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1201 20615..21148 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928460.9341934-UTR-Ecto-sp9_F_contig1201:20342..206141622928460.9341934-UTR-Ecto-sp9_F_contig1201:20342..20614Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1201 20343..20614 -
1692277880.7293642-UTR-Ecto-sp9_F_contig1201:20342..206141692277880.7293642-UTR-Ecto-sp9_F_contig1201:20342..20614Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1201 20343..20614 -
1622928460.9608169-UTR-Ecto-sp9_F_contig1201:21148..212301622928460.9608169-UTR-Ecto-sp9_F_contig1201:21148..21230Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1201 21149..21230 -
1692277880.7471166-UTR-Ecto-sp9_F_contig1201:21148..212301692277880.7471166-UTR-Ecto-sp9_F_contig1201:21148..21230Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1201 21149..21230 -
1622928461.8839593-UTR-Ecto-sp9_F_contig1201:23100..232551622928461.8839593-UTR-Ecto-sp9_F_contig1201:23100..23255Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1201 23101..23255 -
1692277880.7555246-UTR-Ecto-sp9_F_contig1201:23100..232551692277880.7555246-UTR-Ecto-sp9_F_contig1201:23100..23255Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1201 23101..23255 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928460.9472594-CDS-Ecto-sp9_F_contig1201:20614..211481622928460.9472594-CDS-Ecto-sp9_F_contig1201:20614..21148Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1201 20615..21148 -
1692277880.7369025-CDS-Ecto-sp9_F_contig1201:20614..211481692277880.7369025-CDS-Ecto-sp9_F_contig1201:20614..21148Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1201 20615..21148 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1201.1629.1

>prot_Ecto-sp9_F_contig1201.1629.1 ID=prot_Ecto-sp9_F_contig1201.1629.1|Name=mRNA_Ecto-sp9_F_contig1201.1629.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=178bp
MNSGKEVGRRGETLANEDHSALISTQQMPATLLHVYRRATEQEEEAAMPL
ACVQRRTFSPWSKRVERNLAGKRKGREQGKRRRRRKRMARGKRGSLENGN
LMIPSGKDLSKKLSLIARPSPVTARWATAEGKQRAAPSPLFPPPLRVTRG
PSASTGNAPPGCGHRPASRWKAGRILP*
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mRNA from alignment at Ecto-sp9_F_contig1201:20343..23255-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1201.1629.1 ID=mRNA_Ecto-sp9_F_contig1201.1629.1|Name=mRNA_Ecto-sp9_F_contig1201.1629.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2913bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1201:20343..23255- (Ectocarpus species9 EcSCA_722f female)
ATGCGTTCGCGTTCGCGTCTCTTTCTGCCTCTCTCCTCCAAATAATGTCG
ACTACGGGCAAGCTCTCATCGTACTTCACAAAGCGGCGGGAGGTTACGAG
CAGTCGCGCGGGCCCTGAAGAACTACACGTAGGCAGCAGTTCATCATCCG
GCTCGGTGAGCAAGACGCACACCATTCGACGGTACTGCTGTATGTAGTCT
ATTGTAGTACAACAGCCGTAGGCTGCACCAACAGTTTTACATAGTACTGC
TGTGCGCAAACTATGGGATAAAGTATAGAATCGGCTAACTTGGGGGATTG
GGTTAGGGTAGGGTCTGCAGGAAGTCCAAATGCTAGTGGAAATGTCTGTT
TTGTACACCGCTGTTGATGTGCATACTGCTTGTGTAGCGCTCTTCTGTGT
TGGGGGTTGGGGGCCTATCTCGTCCAGACGCATCTCCTGTAGGGAGCCGA
GATGGCTGTGTGGCATTGCCTCCCAGCTGAGTCTTGGCCTATGACTATTT
TTTTGGTGTTTCGTACGGCAGCTGTAGGTTGTACCCTTCAAGCAGTAGTT
GTGCATGGTAATGGGGTCTGTTTCGGGTTGAGCACCTTTTGGCTGTCTCT
GGGGTAGACGTTTCATGTGATTCGTCTATTTCTTCAAAAGTACATTCCAT
GGTTGGTTATGATGATCTGACTGGTGAGATGAGAAACAGCGCCGTGTCAC
TCGCTCCCAAGCAGTATTTCATCAGTGTACTTGTATATACAGTAGTAGTG
CTGTAGTCGACGTGTGGCTCTCATAAGACCAGGAAACTACCGTAAGGATA
CGAGAGAACGCACGGTTCGGTGATATCGCACGCCGGTGATTACGTACCCG
CGTGCGATAAAAAAGCAACAACCAAGTTATTTAGTTCGATTGTCGCACGG
GGTTTGGTGATATGGCACGGGGGTGCGACATCAACGATACCGAGCCCCGA
GTGGCTACGGGTTACTCGCTGCGCAGGAGGTACTTCGCGGTATCGTGAAC
GGTGTTGTGCTGTACGTATGGCGGCATCGCGTCCACATATTGAAACACCT
GCAAATTTTGACAAAAGCATCCTTACGGTATGCGTCGAAAGCACCCACGG
GACTACGGTACTGCTGCTGTAGGATTTATTGTTTACTCAGTATCGCACGT
ACCGGTGATATCGCACCCCCCGTGCGATGAAAACCAAGAGCCAAATTATT
AAATTCGATTATCGCACGGGGACCGGTGATATCGCACGTACCGATGATAT
CGTACGGGGGTGCGATAAAAAGTCAACAAGCAAATCATTTAAGAATCGAT
CGCACCCCCTTGCGTTCTCTCGCATCCTTACGGTAGTGGCTGGAAGAGAG
AGAAGAGACAACGGCATGCATCGGACACTTCTGCAACAAGTGGTGCCCCA
CAAGGAAGTGACCCGACTGCGCGGCAGTGGGTGTGATGGGTGTGCCTGAA
TTTGATACCAACCGTCCTTGTGTCGCATGTTAGTTTTCCCGCAGTCAAGA
ATCGTGTTATTGAAAGACTGCTTGAAATTCACAGCCACACTTTGCCCAGG
GAAGCATTATTTCGTACTTGCCCGAGAACTTGAATCTCTTCGGCATCCCC
CCCGTTTTTTGTCGACAACGGGTGTAAGTTGTGCTGAAGAATCACCCGGA
TGGAGAGTACGAGCAAATAAGGACAATTTGAATCAAACGGTATTACCAGA
TAATGTGTTCGAGAAAGAGAGGCTACGAGACCCGCGGATACATCACCCAC
AGCACCAAGTTTGAATCCCCTCATTTTTTTGTCTGGAGCCCAGCATTTGA
ACCTCGGCTGCATACGCACCTCTCTGCATCTACCGCGCACAACAAGTGAA
AACCCCTTTGGTGTCATGCAGGCTGGGTTGTTGACTTTTTCTTGCCTCCC
CCCTCTTCAGTGGTGAGCCCCACAGCCATTCTCCTCTCTGCCCCCTCCTC
GCTGGTTGCTCAATGGGCATACCATATAGCTCATCTCTCGCTACTGCCGG
TGTTGTCTGTTTTTCTTATGACAAGGTACGAGCACGGTTGGAGAAGAAAC
TGCAGGTGAAGCAGAAAACCGGATTCGCCTTCAACTTTGCGGTAGACAGC
GACGCAGATGAACAGCGGCAAGGAGGTGGGCAGGAGGGGGGAGACGCTGG
CGAACGAGGATCATTCTGCTTTAATTTCAACCCAGCAGATGCCAGCGACG
CTACTACACGTGTACCGGAGAGCAACGGAGCAAGAAGAAGAAGCGGCGAT
GCCTCTAGCCTGCGTGCAGCGCAGGACTTTCTCACCGTGGTCGAAAAGAG
TGGAACGCAACCTAGCGGGAAAAAGAAAAGGACGGGAGCAGGGAAAAAGA
AGAAGAAGAAGAAAAAGGATGGCAAGGGGGAAGCGCGGCAGTCTCGAGAA
CGGAAATCTCATGATCCCGTCGGGGAAGGACCTGAGCAAGAAATTGTCGT
TGATTGCCCGGCCATCTCCAGTCACGGCACGGTGGGCGACGGCGGAGGGG
AAGCAACGAGCAGCGCCGTCGCCTCTCTTCCCGCCGCCGCTGCGAGTGAC
TCGAGGTCCAAGCGCGAGCACAGGCAACGCCCCCCCGGGCTGCGGCCACC
GCCCGGCTTCACGCTGGAAAGCTGGAAGGATCCTGCCATAACCGGCGAGG
AGCGGCGAAGAAGGAGGTTCGGCAGCGGGGTACGGAACATGGTCGCTATT
CAGCGCAGTTGTGACGCAAGGCGAGGCTTGATTCCGGATGGGGAAGTGGG
GGAAGAGAAGTTGCCCGAGAGACAGGGGGAAGGGCTGGGCAGGCCTGGTT
GCGACAGAGCACGAGGGATGGTTGGCGCTGGGGCTCCAGGCAGTACCACC
GGCGGAGGATCATCGGTTTTTGCTTTCGGCTTCGACATTGGTATATCGTT
CGATGGTGGCAGC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1201:20343..23255-

>mRNA_Ecto-sp9_F_contig1201.1629.1 ID=mRNA_Ecto-sp9_F_contig1201.1629.1|Name=mRNA_Ecto-sp9_F_contig1201.1629.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1068bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1201:20343..23255- (Ectocarpus species9 EcSCA_722f female)
ATGAACAGCGGCAAGGAGGTGGGCAGGAGGGGGGAGACGCTGGCGAACGA
GGATCATTCTGCTTTAATTTCAACCCAGCAGATGCCAGCGACGCTACTAC
ACGTGTACCGGAGAGCAACGGAGCAAGAAGAAGAAGCGGCGATGCCTCTA
GCCTGCGTGCAGCGCAGGACTTTCTCACCGTGGTCGAAAAGAGTGGAACG
CAACCTAGCGGGAAAAAGAAAAGGACGGGAGCAGGGAAAAAGAAGAAGAA
GAAGAAAAAGGATGGCAAGGGGGAAGCGCGGCAGTCTCGAGAACGGAAAT
CTCATGATCCCGTCGGGGAAGGACCTGAGCAAGAAATTGTCGTTGATTGC
CCGGCCATCTCCAGTCACGGCACGGTGGGCGACGGCGGAGGGGAAGCAAC
GAGCAGCGCCGTCGCCTCTCTTCCCGCCGCCGCTGCGAGTGACTCGAGGT
CCAAGCGCGAGCACAGGCAACGCCCCCCCGGGCTGCGGCCACCGCCCGGC
TTCACGCTGGAAAGCTGGAAGGATCCTGCCATAAATGAACAGCGGCAAGG
AGGTGGGCAGGAGGGGGGAGACGCTGGCGAACGAGGATCATTCTGCTTTA
ATTTCAACCCAGCAGATGCCAGCGACGCTACTACACGTGTACCGGAGAGC
AACGGAGCAAGAAGAAGAAGCGGCGATGCCTCTAGCCTGCGTGCAGCGCA
GGACTTTCTCACCGTGGTCGAAAAGAGTGGAACGCAACCTAGCGGGAAAA
AGAAAAGGACGGGAGCAGGGAAAAAGAAGAAGAAGAAGAAAAAGGATGGC
AAGGGGGAAGCGCGGCAGTCTCGAGAACGGAAATCTCATGATCCCGTCGG
GGAAGGACCTGAGCAAGAAATTGTCGTTGATTGCCCGGCCATCTCCAGTC
ACGGCACGGTGGGCGACGGCGGAGGGGAAGCAACGAGCAGCGCCGTCGCC
TCTCTTCCCGCCGCCGCTGCGAGTGACTCGAGGTCCAAGCGCGAGCACAG
GCAACGCCCCCCCGGGCTGCGGCCACCGCCCGGCTTCACGCTGGAAAGCT
GGAAGGATCCTGCCATAA
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