mRNA_Ecto-sp9_F_contig11968.1586.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11968.1586.1
Unique NamemRNA_Ecto-sp9_F_contig11968.1586.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11968.1586.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11968contigEcto-sp9_F_contig11968:1538..2059 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-23_001070.1
Exons3
Model size358
Cds size357
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11968.1586.1prot_Ecto-sp9_F_contig11968.1586.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11968 1538..2059 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928453.6378224-CDS-Ecto-sp9_F_contig11968:1537..16441622928453.6378224-CDS-Ecto-sp9_F_contig11968:1537..1644Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11968 1538..1644 -
1692277877.351921-CDS-Ecto-sp9_F_contig11968:1537..16441692277877.351921-CDS-Ecto-sp9_F_contig11968:1537..1644Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11968 1538..1644 -
1622928453.6743462-CDS-Ecto-sp9_F_contig11968:1795..18651622928453.6743462-CDS-Ecto-sp9_F_contig11968:1795..1865Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11968 1796..1865 -
1692277877.360749-CDS-Ecto-sp9_F_contig11968:1795..18651692277877.360749-CDS-Ecto-sp9_F_contig11968:1795..1865Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11968 1796..1865 -
1622928453.6861968-CDS-Ecto-sp9_F_contig11968:1879..20591622928453.6861968-CDS-Ecto-sp9_F_contig11968:1879..2059Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11968 1880..2059 -
1692277877.3733287-CDS-Ecto-sp9_F_contig11968:1879..20591692277877.3733287-CDS-Ecto-sp9_F_contig11968:1879..2059Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11968 1880..2059 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11968.1586.1

>prot_Ecto-sp9_F_contig11968.1586.1 ID=prot_Ecto-sp9_F_contig11968.1586.1|Name=mRNA_Ecto-sp9_F_contig11968.1586.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=119bp
CSACVWSGRARDSTWQLGSDGGGDGDRVYGPVRCAEPPSPEIVVDYGDRA
NTTAPRCRDARPPFHISRRVRSEERGDTSAGLRGTMRTNYITGVYRCMGE
YGGGSQGCMSNVLRAACT*
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mRNA from alignment at Ecto-sp9_F_contig11968:1538..2059-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11968.1586.1 ID=mRNA_Ecto-sp9_F_contig11968.1586.1|Name=mRNA_Ecto-sp9_F_contig11968.1586.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=522bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11968:1538..2059- (Ectocarpus species9 EcSCA_722f female)
TGCAGCGCCTGTGTATGGAGCGGCCGAGCCAGGGACAGCACTTGGCAGCT
TGGCAGCGACGGGGGGGGCGACGGGGACAGAGTGTACGGTCCGGTACGGT
GTGCGGAGCCCCCTTCTCCGGAGATTGTCGTAGATTACGGAGATCGTGCC
AACACCACCGCGCCGAGATGCCGAGATGCAGTTGCAGAGTCCAGAGACCA
CCCTTCCACATATCAAGACGTGTGAGGAGCGAAGAGCGAGGAGATACCTC
TGCTGGGTTGAGGGGTGAGTTTTGTCCTTGTTCTTTCGTTTGCCTGTTTA
TGTGTTATTGTACCTCGTGTGAAATGGTTGCAAGATGATACAGCGTGTGT
AAGCAGTAGTGTTTAGGCTGCATAGGTGCTCGTGTGGCTCTATTTCCCCC
TCATTTAGCACACAGGCACCATGCGAACGAATTACATCACAGGTGTCTAC
AGATGCATGGGAGAGTACGGCGGTGGCAGCCAGGGGTGTATGAGCAATGT
CCTTAGAGCTGCGTGCACATAA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11968:1538..2059-

>mRNA_Ecto-sp9_F_contig11968.1586.1 ID=mRNA_Ecto-sp9_F_contig11968.1586.1|Name=mRNA_Ecto-sp9_F_contig11968.1586.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=714bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11968:1538..2059- (Ectocarpus species9 EcSCA_722f female)
TGCAGCGCCTGTGTATGGAGCGGCCGAGCCAGGGACAGCACTTGGCAGCT
TGGCAGCGACGGGGGGGGCGACGGGGACAGAGTGTACGGTCCGGTACGGT
GTGCGGAGCCCCCTTCTCCGGAGATTGTCGTAGATTACGGAGATCGTGCC
AACACCACCGCGCCGAGATGCCGAGATGCATGCAGCGCCTGTGTATGGAG
CGGCCGAGCCAGGGACAGCACTTGGCAGCTTGGCAGCGACGGGGGGGGCG
ACGGGGACAGAGTGTACGGTCCGGTACGGTGTGCGGAGCCCCCTTCTCCG
GAGATTGTCGTAGATTACGGAGATCGTGCCAACACCACCGCGCCGAGATG
CCGAGATGCAAGACCACCCTTCCACATATCAAGACGTGTGAGGAGCGAAG
AGCGAGGAGATACCTCTGCTGGGTTGAGGGAGACCACCCTTCCACATATC
AAGACGTGTGAGGAGCGAAGAGCGAGGAGATACCTCTGCTGGGTTGAGGG
GCACCATGCGAACGAATTACATCACAGGTGTCTACAGATGCATGGGAGAG
TACGGCGGTGGCAGCCAGGGGTGTATGAGCAATGTCCTTAGAGCTGCGTG
CACATAAGCACCATGCGAACGAATTACATCACAGGTGTCTACAGATGCAT
GGGAGAGTACGGCGGTGGCAGCCAGGGGTGTATGAGCAATGTCCTTAGAG
CTGCGTGCACATAA
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