mRNA_Ecto-sp9_F_contig11954.1578.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig11954.1578.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3P9_ECTSI) HSP 1 Score: 453 bits (1165), Expect = 5.630e-159 Identity = 236/266 (88.72%), Postives = 242/266 (90.98%), Query Frame = 3
Query: 87 VAGVSPQDRQVQFSRSEAEMLRMKEELLKLELPHIDDGAEEESGEATWRNACEMVKGVVGYDGYRLQRRNKLKLYSGTADRNRPLRKRWRTVLIVCDQGGKPDRRSRVVQNSPKDTTSKKASLCLHHYVDPGNIEHSPPQPGKNEMTDKEIEKRAGLIQLLHVQRLDTKAMHKALQDNGWRLGIEGKQKARDIRARLDKQRLEDAGGANDAQQLLERLQLEGCWMRFALDEARRVKRIAWALVEQQKNALRFHSVIIQDNTFNTNT 884
VA VSPQDR+VQFSRSEAEMLRMKEELL LELPHIDDGAEEESGEATWRNA YRLQRRNKLKLYSGTAD RPLR RWRTVLIVCDQ GKPDRRSRVVQNSPKDTTSKKASLCLHHYVDPGNIEHSPPQPGKNEMTD+ IEKRAGLI+LLHVQ LD KAMHKALQDNGWRLGIEGKQK R +RARLDKQRLEDAGGANDA+QLLERLQLEGCWMRFALDEA RVKRIAWALVEQQKNALR+HSVIIQDNTFNTNT
Sbjct: 29 VARVSPQDRKVQFSRSEAEMLRMKEELLNLELPHIDDGAEEESGEATWRNA------------YRLQRRNKLKLYSGTADGKRPLRNRWRTVLIVCDQDGKPDRRSRVVQNSPKDTTSKKASLCLHHYVDPGNIEHSPPQPGKNEMTDEGIEKRAGLIRLLHVQGLDAKAMHKALQDNGWRLGIEGKQKVRSVRARLDKQRLEDAGGANDAEQLLERLQLEGCWMRFALDEAGRVKRIAWALVEQQKNALRYHSVIIQDNTFNTNT 282
BLAST of mRNA_Ecto-sp9_F_contig11954.1578.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGN7_9PHAE) HSP 1 Score: 182 bits (461), Expect = 5.980e-54 Identity = 92/146 (63.01%), Postives = 111/146 (76.03%), Query Frame = 3
Query: 450 SLCLHHYVDP--GNIEHSPPQPGKNEMTDKEIEKRAGLIQLLHVQRLDTKAMHKALQDNGWRLGIEGKQKARDIRARLDKQRLEDAGGANDAQQLLERLQLEGCWMRFALDEARRVKRIAWALVEQQKNALRFHSVIIQDNTFNTN 881
SLCLHHYVD G +EH PP NEMTD+ IE++A I++LH Q++DTK +HKALQ RLG GK K R +R R +K++ ++ GGANDAQQLLERLQLEGCWMRF LD A R+ RIAWA EQ+KN LR+H +IIQDNTFNTN
Sbjct: 16 SLCLHHYVDSTDGGVEHEPPNVFDNEMTDEMIEEQASTIRMLHFQKVDTKTIHKALQSGKRRLGERGKPKVRTMRVRFNKEQADELGGANDAQQLLERLQLEGCWMRFELDNAGRITRIAWATDEQRKNVLRYHWIIIQDNTFNTN 161
BLAST of mRNA_Ecto-sp9_F_contig11954.1578.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0I3_9PHAE) HSP 1 Score: 164 bits (415), Expect = 2.330e-45 Identity = 84/147 (57.14%), Postives = 110/147 (74.83%), Query Frame = 3
Query: 450 SLCLHHYV--DPGNIE-HSPPQPGKNEMTDKEIEKRAGLIQLLHVQRLDTKAMHKALQDNGWRLGIEGKQKARDIRARLDKQRLEDAGGANDAQQLLERLQLEGCWMRFALDEARRVKRIAWALVEQQKNALRFHSVIIQDNTFNTN 881
SLCLH+YV + G +E H+PP+ +NEM + I++ LI++LH Q DTKA++K +Q +GWRLG GKQ+ R +R R +K+R GGANDAQQLL +LQ EGCWM F LD + R+ RIAWAL EQ+KNALR++ +IIQDNTFNTN
Sbjct: 147 SLCLHYYVSSEAGALEEHAPPRRLENEMPPEMIQEHEALIRMLHFQNNDTKAIYKTIQRDGWRLGARGKQQVRTMRTRFEKERAASVGGANDAQQLLRQLQSEGCWMSFTLDNSGRINRIAWALDEQKKNALRYYPLIIQDNTFNTN 293
BLAST of mRNA_Ecto-sp9_F_contig11954.1578.1 vs.
Match: SWIM-type (domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXK5_9PHAE) HSP 1 Score: 155 bits (393), Expect = 5.220e-39 Identity = 104/274 (37.96%), Postives = 145/274 (52.92%), Query Frame = 3
Query: 132 SEAEMLRMKEELLKLELPHIDDGAEEESGEATWRNACEMVKGVVGYDGYRLQRRNKLKLYSGTADRNRPLRKRWRTVLIVCDQGGKPDRRSRVVQNSPKDTTSK-----------------------KASLCL-HHYVDPGNIEHSPPQPGKNEMTDKEIEKRAGLIQLLHVQRLDTKAMHKALQDNGWRLGIEGKQKARDIRARLDKQRLEDAGGANDAQQLLERLQLEGCWMRFALDEARRVKRIAWALVEQQKNALRFHSVIIQDNTFNTN 881
S ++ ++ E+ L P+++ G++++ GEAT NA M+K +G GY LQR NK KLY+ + R RW V IVC Q G P R RV S + TS K LCL HH G EH P+ +NEM+ EIE + ++ LH R+ T +HK L+ G RLG GKQK R + A+ D +R + G NDAQ L+ LQ ++RF ++ R + IAWA +Q+ A+R+H +IIQDNTFNTN
Sbjct: 83 SPEDLATLQGEVENLLFPNLEQGSQQQFGEATIENAVGMLKAKIGR-GYPLQRHNKTKLYTRKQEAEHGRRNRWNYVEIVCPQAGSPRARERVANASARRNTSSEKIGCAFEVGLWWAANSPAPIVAKGKLCLTHHTKTSGGKEHERPRAIENEMSVAEIEAKRDFLRELHASRVKTTEIHKTLERVGKRLGQAGKQKVRTMMAQFDAERQAENGAFNDAQLLVGHLQNTEAFLRFKHEDGR-MTCIAWASQDQKVLAMRYHKIIIQDNTFNTN 354
BLAST of mRNA_Ecto-sp9_F_contig11954.1578.1 vs.
Match: MULE (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJW1_9PHAE) HSP 1 Score: 140 bits (352), Expect = 1.230e-35 Identity = 77/143 (53.85%), Postives = 96/143 (67.13%), Query Frame = 3
Query: 453 LCLHHYVDPGNIEHSPPQPGKNEMTDKEIEKRAGLIQLLHVQRLDTKAMHKALQDNGWRLGIEGKQKARDIRARLDKQRLEDAGGANDAQQLLERLQLEGCWMRFALDEARRVKRIAWALVEQQKNALRFHSVIIQDNTFNTN 881
+CLHH V +EH P + +NEMT +E+EK GLI LH Q++D + KALQ RLG +GK+ R I +R ++ E A DA+Q L +LQ EG W+RF LDE RRV RIAWAL EQQ NALR+ S+IIQDNTFNTN
Sbjct: 6 MCLHHCVGTTGVEHEPRRTFENEMTQEEVEKETGLILRLHFQKVDKPQIFKALQTPTKRLGAKGKEMVRTIISRAER---ESAADVEDARQFLGKLQKEGVWVRFQLDEDRRVARIAWALDEQQGNALRYSSIIIQDNTFNTN 145
BLAST of mRNA_Ecto-sp9_F_contig11954.1578.1 vs.
Match: MULE (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG50_9PHAE) HSP 1 Score: 124 bits (311), Expect = 1.240e-29 Identity = 69/146 (47.26%), Postives = 92/146 (63.01%), Query Frame = 3
Query: 453 LCLHHYVDPGNI---EHSPPQPGKNEMTDKEIEKRAGLIQLLHVQRLDTKAMHKALQDNGWRLGIEGKQKARDIRARLDKQRLEDAGGANDAQQLLERLQLEGCWMRFALDEARRVKRIAWALVEQQKNALRFHSVIIQDNTFNTN 881
+CLHHY+ EH PP+ +NEMTD+EIE+ I +++ LQ RLG++GK+K R I R +K++ + ANDAQQL RLQ E W+RF LD+ R+ RIAWAL EQ+KNALR++ +IIQDNTF TN
Sbjct: 6 MCLHHYLRGSGASGGEHDPPRTFENEMTDEEIEQNTAKILSYDSNGAKNPTIYQQLQTPTKRLGVKGKEKVRTIIKRYEKEQADKREHANDAQQLFTRLQQENVWVRFQLDKDGRIVRIAWALEEQKKNALRYYPIIIQDNTFGTN 151
BLAST of mRNA_Ecto-sp9_F_contig11954.1578.1 vs.
Match: SWIM-type (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYV9_9PHAE) HSP 1 Score: 125 bits (314), Expect = 1.520e-28 Identity = 72/143 (50.35%), Postives = 91/143 (63.64%), Query Frame = 3
Query: 453 LCLHHYVDPGNIEHSPPQPGKNEMTDKEIEKRAGLIQLLHVQRLDTKAMHKALQDNGWRLGIEGKQKARDIRARLDKQRLEDAGGANDAQQLLERLQLEGCWMRFALDEARRVKRIAWALVEQQKNALRFHSVIIQDNTFNTN 881
+ LHH V EH P + +NEMT +E+EK GLI LH Q++D + KALQ RLG +GK+ R + + ++ E A DA+Q L + Q E W+RF LDE RRV RIAWAL EQQ NALR+ S+IIQDNTFNTN
Sbjct: 6 MWLHHCVGIIGAEHEPRRTFENEMTQEEVEKETGLILRLHFQKVDKPQIFKALQTPTKRLGAKGKEMVRTVISGAER---ESAADVEDARQFLGKFQKEDVWVRFQLDEDRRVARIAWALDEQQGNALRYSSIIIQDNTFNTN 145
BLAST of mRNA_Ecto-sp9_F_contig11954.1578.1 vs.
Match: MULE (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2E4_9PHAE) HSP 1 Score: 116 bits (290), Expect = 4.090e-27 Identity = 63/132 (47.73%), Postives = 87/132 (65.91%), Query Frame = 3
Query: 486 IEHSPPQPGKNEMTDKEIEKRAGLIQLLHVQRLDTKAMHKALQDNGWRLGIEGKQKARDIRARLDKQRLEDAGGANDAQQLLERLQLEGCWMRFALDEARRVKRIAWALVEQQKNALRFHSVIIQDNTFNTN 881
+EH P+ +N++++++IEK + LI+LLH + L T +HKA +D G RLG GKQK R +R D +R D G NDAQ + LQ +MRF DE R+ IAWA +Q+ NA+R+H VI+QDNTFNTN
Sbjct: 1 MEHERPRRYENDVSEEDIEKESELIRLLHFRNLSTIEIHKAFEDIGKRLGRVGKQKVRSVRDAFDAERKADNGVFNDAQLFVSHLQHSEAFMRFKADEQSRITSIAWAYQQQKYNAVRYHFVIVQDNTFNTN 132
BLAST of mRNA_Ecto-sp9_F_contig11954.1578.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI64_9PHAE) HSP 1 Score: 115 bits (289), Expect = 3.130e-25 Identity = 68/146 (46.58%), Postives = 89/146 (60.96%), Query Frame = 3
Query: 453 LCLHHYVD---PGNIEHSPPQPGKNEMTDKEIEKRAGLIQLLHVQRLDTKAMHKALQDNGWRLGIEGKQKARDIRARLDKQRLEDAGGANDAQQLLERLQLEGCWMRFALDEARRVKRIAWALVEQQKNALRFHSVIIQDNTFNTN 881
LCLHHY +EH+PP+ +NEMTD+EIE++ I ++ + K LQ RLG +GK+K E G ANDAQ+LL+ LQ EG W+RF LD+ RV RIAWAL EQ++NALR+ ++IQDNTF TN
Sbjct: 6 LCLHHYFGGSGANKVEHNPPRTFENEMTDEEIEEQTAKILSMYSHGAKNPEIFKQLQTPTKRLGGKGKEKGE----------AEKRGHANDAQKLLKLLQAEGVWVRFQLDKDGRVGRIAWALDEQKRNALRYFPIVIQDNTFGTN 141
BLAST of mRNA_Ecto-sp9_F_contig11954.1578.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCQ6_9PHAE) HSP 1 Score: 87.0 bits (214), Expect = 2.430e-16 Identity = 67/201 (33.33%), Postives = 96/201 (47.76%), Query Frame = 3
Query: 348 RWRTVLIVCDQGGKPDRRSRVV-QNSPKDTTSKK----------------------ASLCL-HHYVDPGNIEHSPPQPGKNEMTDKEIEKRAGLIQLLHVQRLDTKAMHKALQD-NGWRLGIEGKQKARDIRARLDKQRLEDAGGANDAQQLLERLQLEGCWMRFALDEARRVKRIAWALVEQQKNALRFHSVIIQDNTFN 875
RW V I C G+P RR RV + K+T+S K +CL HH EH+ P+ NEM+ +++E+ + I L + T +HK +Q +G RLG+EGK R + +++ R NDAQ+ L +Q + F D+ R+ IAWA Q+ A+RFHSVII D TFN
Sbjct: 71 RWICVWITCVHHGEPRRRERVANEEDRKNTSSSKLGCNFKTVLWWSANSDAPVVAQGGMCLTHHTPSSDEKEHARPRTFDNEMSREDMEQMSDFIIDLADAGVKTVDLHKTVQQKSGKRLGVEGKAVVRSV---VERHRKASREAFNDAQEFLMHVQRTKAHLWFRADDEARITSIAWASDVQKATAVRFHSVIITDTTFN 268 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11954.1578.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig11954.1578.1 >prot_Ecto-sp9_F_contig11954.1578.1 ID=prot_Ecto-sp9_F_contig11954.1578.1|Name=mRNA_Ecto-sp9_F_contig11954.1578.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=248bp MLRMKEELLKLELPHIDDGAEEESGEATWRNACEMVKGVVGYDGYRLQRRback to top mRNA from alignment at Ecto-sp9_F_contig11954:1028..3558- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig11954.1578.1 ID=mRNA_Ecto-sp9_F_contig11954.1578.1|Name=mRNA_Ecto-sp9_F_contig11954.1578.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2531bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11954:1028..3558- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11954:1028..3558- >mRNA_Ecto-sp9_F_contig11954.1578.1 ID=mRNA_Ecto-sp9_F_contig11954.1578.1|Name=mRNA_Ecto-sp9_F_contig11954.1578.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1488bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11954:1028..3558- (Ectocarpus species9 EcSCA_722f female)back to top |