mRNA_Ecto-sp9_F_contig11869.1526.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig11869.1526.1 vs.
Match: Ankyrin (repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G744_ECTSI) HSP 1 Score: 256 bits (653), Expect = 7.750e-76 Identity = 227/367 (61.85%), Postives = 240/367 (65.40%), Query Frame = 1
Query: 1 VQGGKYDDARSTPLHMASKKGSPEAALSLVKHGADVHRFNR-EHDSALRLAARDDHIAIGKTLLAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-AADSRGCTALFKIGQENSVAVIDKLVAAGASVNGMVDHYGRTPLHPAFMDECPAEAIVSMLRHEARVNVKDNDGKTPLHAACVEGCSEGIRALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPARITDESQALXXXXXXXXXXXXXXXXXXXXXXXARDTNGYSALHHAALGNQVGAIDALMSAGAIIDAQENCMSTPLAIAFRSAFRRGKKKDNRGSEEFASMIALLKHGADPNIRNIEKGCPDTLLH 1095
VQGGKYDDARSTPLHMASKKGS EAALSLVKH ADVHR E SALRLAA HIAI KTLLAA XXXXXXXXXXXXXX A DSRG TALF + +EN+VAVIDKLVAA ASVNG+VDHYGRTPLH A +D+ P A+VSMLRH ARV VK N+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPARITDESQAL ARDT IIDAQEN MS PLAIAFRSAF GKKKDNRGSE FA+MIALLKHGADPN+RN+++GC T LH
Sbjct: 196 VQGGKYDDARSTPLHMASKKGSSEAALSLVKHRADVHRLKGYERYSALRLAACSGHIAIVKTLLAAGANVNLRPAALCESALDSARSXXXXXXXXXXXXXXAIVDATDSRGRTALFNVSRENTVAVIDKLVAAWASVNGIVDHYGRTPLHHACLDDYPG-AVVSMLRHGARVEVKANNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPARITDESQALSLAASRGCVDAIKVLIQHGADANARDTXXXXXXXXXXXXXXXXXXXXXXXXXXIIDAQENHMSAPLAIAFRSAFHGGKKKDNRGSEGFAAMIALLKHGADPNVRNVQEGC--TALH 559
BLAST of mRNA_Ecto-sp9_F_contig11869.1526.1 vs.
Match: Ankyrin (repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHH2_ECTSI) HSP 1 Score: 233 bits (593), Expect = 1.540e-65 Identity = 232/374 (62.03%), Postives = 266/374 (71.12%), Query Frame = 1
Query: 1 VQGGKYDDARSTPLHMASKKGSPEAALSLVKHGADVHR------FNREHDSALRLAARDDHIAIGKTLLAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-AADSRGCTALFKIGQENSVAVIDKLVAAGASVNGMVDHYGRTPLHPAFMDECPAEAIVSMLRHEARVNVKDNDGKTPLHAACVEGCSEGIRALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPARITDESQALXXXXXXXXXXXXXXXXXXXXXXX--ARDTNGYSALHHAALGNQVGAIDALMSAGAIIDAQENCMSTPLAIAFRSAFRRGKKKDNRGSEEFASMIALLKHGADPNIRNIEKGCPDTLLH 1095
QGG Y R TPLHMAS++GS +AALSLVKHGADVHR F R+ +AL LAAR+ H AI KTLLAA XXXXXXXXXXXXXXXXXXX A D GC+ L K+ E++VAVID+LVAAGASVNG+ D +GRTPLH A +CP EA+VSMLRH ARV+VKD+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX APA + S AL XXXXXXXXXXXXXXXXXX ARDT+G+SALHHAA N+VG ID L+SAGAI + +N TPLA+AFRSA R +++DN GSEEFA+M+ALLKHGADPN RNI+ G ++LL+
Sbjct: 238 AQGGTYGK-RYTPLHMASERGSSKAALSLVKHGADVHRSGKVCSFGRDCSNALNLAARNGHTAIVKTLLAAGANANLRPAYSHHSALXXXXXXXXXXXXXXXXXXXAIVDATDPWGCSPLHKVSGESNVAVIDQLVAAGASVNGIADRFGRTPLHCACTGDCP-EAVVSMLRHGARVDVKDDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVNAPADYANGSAALSLATLXXXXXXXXXXXXXXXXXXXXARDTDGFSALHHAAFHNEVGGIDVLISAGAIFEVLDNRKRTPLAVAFRSAHARWEEEDNCGSEEFAAMVALLKHGADPNTRNIQDGSTNSLLY 609
BLAST of mRNA_Ecto-sp9_F_contig11869.1526.1 vs.
Match: Ankyrin (repeat protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G751_ECTSI) HSP 1 Score: 226 bits (577), Expect = 2.500e-63 Identity = 205/370 (55.41%), Postives = 240/370 (64.86%), Query Frame = 1
Query: 1 VQGGKYDDARSTPLHMASKKGSPEAALSLVKHGADVHRFN----REHDSALRLAARDDHIAIGKTLLAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-AADSRGCTALFKIGQENSVAVIDKLVAAGASVNGMVDHYGRTPLHPAFMDECPAEAIVSMLRHEARVNVKDNDGKTPLHAACVEGCSEGIRALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPARITDESQALXXXXXXXXXXXXXXXXXXXXXXX-ARDTNGYSALHHAALGNQVGAIDALMSAGAIIDAQENCMSTPLAIAFRSAFRRGKKKDNRGSEEFASMIALLKHGADPNIRNIEKGCPDTLL 1092
QGG+ D AR TPLH+AS++GS EAALSLVKHGADVHR R +AL LAA H I +LLAA XXXXXXXXXX A DSRGCTALFK+ + A+IDKLVAAGASVNG+VD GRTPLH A M++CP EAI+SMLRH ARV+ KD+D XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX APA TD S AL AR+T+G++ALH AA+ N+V +D L+SAGAII+A +N STPLA+AFR A R KK N G+ +FA+M++LLKHGADPNI NI++GCP++LL
Sbjct: 237 AQGGE-DGARYTPLHVASEQGSSEAALSLVKHGADVHRSGKTCRRRRCNALNLAAGRGHTMIVTSLLAAGVNVNLRPAYSDKSALDAAFQGXXXXXXXXXXQHGAFVDATDSRGCTALFKVSHNTNAALIDKLVAAGASVNGIVDATGRTPLHHACMNDCP-EAIISMLRHGARVDAKDDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAPADHTDGSAALSLATLSEYVDDTMKILIQHGADVNARNTDGFTALHRAAMYNEVDGVDLLISAGAIIEALDNHKSTPLAVAFREAVYRWKKY-NGGAGDFAAMVSLLKHGADPNIGNIQEGCPNSLL 603
BLAST of mRNA_Ecto-sp9_F_contig11869.1526.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN84_9PHAE) HSP 1 Score: 225 bits (573), Expect = 5.800e-63 Identity = 195/372 (52.42%), Postives = 230/372 (61.83%), Query Frame = 1
Query: 1 VQGGKYDDARSTPLHMASKKGSPEAALSLVKHGADVHR------FNREHDSALRLAARDDHIAIGKTLLAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-AADSRGCTALFKIGQENSVAVIDKLVAAGASVNGMVDHYGRTPLHPAFMDECPAEAIVSMLRHEARVNVKDNDGKTPLHAACVEGCSEGIRALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPARITDESQALXXXXXXXXXXXXXXXXXXXXXXX-ARDTNGYSALHHAALGNQVGAIDALMSAGAIIDAQENCMSTPLAIAFRSAFRRGKKKDNRGSEEFASMIALLKHGADPNIRNIEKGCPDTLL 1092
QGG+ D AR TPLHMAS+KG E ALSLVKH ADVHR + R+ +AL LAA HIA+ K+LLAA A DS GCTALFK+ + + A+IDKLVAAGA++NG+V+ GRTPLH A MD+CP EA SMLRH ARV+ KD+DG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPA TD S AL AR+TNG++ALH AA+ N+V ID L+SAGAII+A +N STPLA+ FR A R KK+ + G ++FA+MI LLKHGADPNI NI++GCP +LL
Sbjct: 237 AQGGE-DGARYTPLHMASEKGLSETALSLVKHRADVHRSGKMSRWERKCCNALNLAAGRGHIAVVKSLLAAGVNVNLRPAYSDELALDAAFQGGHADIVTTLIQHGAFVDATDSCGCTALFKVSLDTNAALIDKLVAAGAAMNGIVNATGRTPLHHACMDDCP-EANASMLRHGARVDAKDDDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPADHTDGSAALSLATLSEHVDGTMKILIQHGADVNARNTNGFTALHRAAMYNKVDGIDLLISAGAIIEAPDNHKSTPLAVTFREAVYRWKKEHSCGLQDFAAMITLLKHGADPNIGNIQEGCPHSLL 606
BLAST of mRNA_Ecto-sp9_F_contig11869.1526.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN15_9PHAE) HSP 1 Score: 207 bits (527), Expect = 1.510e-56 Identity = 158/391 (40.41%), Postives = 190/391 (48.59%), Query Frame = 1
Query: 1 VQGGKYDDARSTPLHMASKKGSPEAALSLVKHGADVHRFN------REHDSALRLAARDDHIAIGKTLLAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-AADSRGCTALFKIGQENSVAVIDKLVAAGASVNGMVDHYGRTPLHPAFMDECPAEAIVSMLRHE------------ARVNVKDND-----GKTPLHAACVEGCSEGIRALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPARITDESQA--LXXXXXXXXXXXXXXXXXXXXXXXARDTNGYSALHHAALGNQVGAIDALMSAGAIIDAQENCMSTPLAIAFRSAFRRGKKKDNRGSEEFASMIALLKHGADPNIRNIEKGCPDTLLH 1095
QGG+ D AR TPLHMAS+KG EAALSLVKH ADVHR R+ +AL LAA HIA+ K+LLAA A DSRGCTALFK+ + + A+IDKLVAAGA++NG+V+ GRTPLH A MD+CP EAIVSMLRH ARV+ KD+D G+TPL GC + L APA D S A L ++ +SALH AA + + ID L+SAGAII+A +N S PLA+AFR A RGK DN G+ EFA+MIALLKHGA PNI N KG + LL+
Sbjct: 211 AQGGE-DGARYTPLHMASEKGLSEAALSLVKHRADVHRSGKMSRRERKCCNALSLAAGRGHIAVVKSLLAAGVNVNLRPAYSGELALDAAFQGGHADIVTTLIQHGAFVDATDSRGCTALFKVSLDTNAALIDKLVAAGAAMNGIVNATGRTPLHHACMDDCP-EAIVSMLRHXXXXXXXXXXXXGARVDAKDDDALTAKGRTPLGLTAEFGCEDATVVLLDAGADVK---------------------------------APANSADGSAAPSLATLNDFNADGIMNVLIQHGVDVNGKNNEEFSALHRAAYHDDIDCIDVLISAGAIIEATDNHKSMPLAVAFREAVDRGKG-DNSGAGEFAAMIALLKHGAYPNIGNKGKGYSNYLLY 565
BLAST of mRNA_Ecto-sp9_F_contig11869.1526.1 vs.
Match: Ankyrin (repeat protein (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJC1_ECTSI) HSP 1 Score: 182 bits (461), Expect = 4.360e-49 Identity = 174/351 (49.57%), Postives = 208/351 (59.26%), Query Frame = 1
Query: 1 VQGGKYDDARSTPLHMASKKGSPEAALSLVKHGADVHR------FNREHDSALRLAARDDHIAIGKTLLAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-AADSRGCTALFKIGQENSVAVIDKLVAAGASVNGMVDHYGRTPLHPAFMDECPAEAIVSMLRHEARVNVKDNDGKTPLHAACVEGCSEGIRALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPARITDESQALXXXXXXXXXXXXXXXXXXXXXXX-ARDTNGYSALHHAALGNQVGAIDALMSAGAIIDAQENCMSTPLAIAFRSAFRRGKKKDNRGSEEFASMIAL 1029
QGG+ D TPLH+AS+KGS EAALSLVKHGADVHR + R +AL LAA H I +LLAA A DSRGCTALFK+ + + A+IDKLVAAGASVNGM DH+G+TPLH A M++CP A+VSMLR+ A ++VKD XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX APA TD S AL AR+T+G++ALH AA+ N+V +D L+SAGAII+A +N STPLA+AFR A R KK N G+ +FA+M++L
Sbjct: 168 AQGGE-DGEMYTPLHVASEKGSSEAALSLVKHGADVHRSGRMSRWGRSCGNALILAAGRGHTMIVTSLLAAGVNVNLRPAYSDKSALDAAFQGGHADIVTTLIQHGAFVDATDSRGCTALFKVSHDTNAALIDKLVAAGASVNGMADHHGKTPLHHACMNDCPG-AVVSMLRYGALIDVKDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAPADHTDGSAALSLATLSEYVDDTMKILIQHGADVNARNTDGFTALHRAAMYNEVDGVDLLISAGAIIEALDNHKSTPLAVAFREAVYRWKKY-NGGAGDFAAMVSL 515
BLAST of mRNA_Ecto-sp9_F_contig11869.1526.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT48_9PHAE) HSP 1 Score: 139 bits (350), Expect = 2.840e-33 Identity = 130/357 (36.41%), Postives = 145/357 (40.62%), Query Frame = 1
Query: 1 VQGGKYDDARSTP-LHMASKKGSPEAALSLVKHGADVHRFNREHDSALRLAARDDHIAIGKTLLAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-AADSRGCTALFKIGQENSVAVIDKLVAAGASVNGMVDHYGRTPLHPAFMDECPAEAIVSMLRHEARVNVKDNDGKTPLHAACVEGCSEGIRALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPARITDESQALXXXXXXXXXXXXXXXXXXXXXXXARDTNGYSALHHAALGNQVGAIDALMSAGAIIDAQENCMSTPLAIAFRSAFRRGKKKDNRGSEEFASMIALLKHGADPNIRNI 1065
VQ GKYDDARSTP LHMAS+KG E SALRLA HIA K+LLAA XXXXXXXX A DS G TALF + +EN+V VIDK+VAAGASVN +VDHYG+T LH A +D+CP G V AIDAL+SAGAIIDAQEN MSTPL IAFR A R KK+DN GSEEFA+MIALLKHGADPN+RN+
Sbjct: 204 VQRGKYDDARSTPPLHMASEKGY-------------------ERYSALRLATCSGHIATVKSLLAAGANVDLRPAALCKSAFDSACLGGHADVXXXXXXXXAKVDATDSCGRTALFDVSRENTVTVIDKVVAAGASVNVIVDHYGKTLLHHACLDDCP-----------------------------------------------------------------------------------------------------------------------------------GLVVDAIDALVSAGAIIDAQENHMSTPLVIAFRGAVFRCKKEDNCGSEEFAAMIALLKHGADPNVRNV 410 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11869.1526.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig11869.1526.1 >prot_Ecto-sp9_F_contig11869.1526.1 ID=prot_Ecto-sp9_F_contig11869.1526.1|Name=mRNA_Ecto-sp9_F_contig11869.1526.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=365bp VQGGKYDDARSTPLHMASKKGSPEAALSLVKHGADVHRFNREHDSALRLAback to top mRNA from alignment at Ecto-sp9_F_contig11869:2638..3732- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig11869.1526.1 ID=mRNA_Ecto-sp9_F_contig11869.1526.1|Name=mRNA_Ecto-sp9_F_contig11869.1526.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1095bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11869:2638..3732- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11869:2638..3732- >mRNA_Ecto-sp9_F_contig11869.1526.1 ID=mRNA_Ecto-sp9_F_contig11869.1526.1|Name=mRNA_Ecto-sp9_F_contig11869.1526.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2190bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11869:2638..3732- (Ectocarpus species9 EcSCA_722f female)back to top |