mRNA_Ecto-sp9_F_contig1183.1511.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1183.1511.1
Unique NamemRNA_Ecto-sp9_F_contig1183.1511.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig1183.1511.1 vs.
Match: Uracil-DNA (glycosylase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFW4_ECTSI)

HSP 1 Score: 513 bits (1321), Expect = 4.460e-183
Identity = 270/280 (96.43%), Postives = 274/280 (97.86%), Query Frame = 1
Query:    1 MPGTNSRTGANNGSSXXXXXXXXXXXXXXXXXXGGGLGSGEQAVSKRPKISCSEGSPIKEEGWATALSGETSKPYFGRLQAFLDKQYASKVIYPPRDKLFNAFDSCPLSNVKVVILGQDPYHQPGQAHGLAFSVMKGVMQPPSLRNMVKEAVSCCGITPTKSGNLDSWCSQGVLLLNTVLSVERSKANSHKNQGWEQFTDAVVRELNKGDRRLVFLLWGKPSQKKGALIDSSKHRVITCAHPSPLSATRKPDPFIGSECFKKANDALEELGHGGVDWNVL 840
            MPGTNS TGANN   XXXXXXXXXXXXXXXXXX GGLGSGE+AVSKRPKIS SEGSPIKE+GWATALSGET+KPYFGRLQAFLDKQYASKVIYPPRDKLFNAFDSCPLSNVKVVILGQDPYHQPGQAHGLAFSVMKGVMQPPSLRNMVKEAVSCCGITPTKSGNLDSWCSQGVLLLNTVLSVERSKANSHKNQGWE+FTDAVVRELNKGDRRLVFLLWGKPSQKKGALIDSSKHRVITCAHPSPLSATRKPDPFIGSECFKKANDALEELGHGGVDWNVL
Sbjct:    1 MPGTNSSTGANNXXXXXXXXXXXXXXXXXXXXXXGGLGSGERAVSKRPKISSSEGSPIKEDGWATALSGETTKPYFGRLQAFLDKQYASKVIYPPRDKLFNAFDSCPLSNVKVVILGQDPYHQPGQAHGLAFSVMKGVMQPPSLRNMVKEAVSCCGITPTKSGNLDSWCSQGVLLLNTVLSVERSKANSHKNQGWEKFTDAVVRELNKGDRRLVFLLWGKPSQKKGALIDSSKHRVITCAHPSPLSATRKPDPFIGSECFKKANDALEELGHGGVDWNVL 280          
BLAST of mRNA_Ecto-sp9_F_contig1183.1511.1 vs.
Match: Uracil-DNA (glycosylase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBN7_9STRA)

HSP 1 Score: 298 bits (762), Expect = 7.980e-99
Identity = 140/224 (62.50%), Postives = 173/224 (77.23%), Query Frame = 1
Query:  169 PIKEEGWATALSGETSKPYFGRLQAFLDKQYAS-KVIYPPRDKLFNAFDSCPLSNVKVVILGQDPYHQPGQAHGLAFSVMKGVMQPPSLRNMVKEAVSCCGITPTKSGNLDSWCSQGVLLLNTVLSVERSKANSHKNQGWEQFTDAVVRELNKGDRRLVFLLWGKPSQKKGALIDSSKHRVITCAHPSPLSATRKPDPFIGSECFKKANDALEELGHGGVDWNV 837
            P+ +  W+ ALS E  KPYF +L AFL KQ A+ K IYPP+DK+F+A ++CPL  V+VVILGQDPYH PGQAHGL+FSV +GV QPPSLRN+VKEA +CCG  PTK+G L  W  QGVLLLNTVL+VE+    SH  +GWEQFTD VVR LN+ +R +VFLLWGKPSQ+KGA I+ ++HRVITC+HPSPL AT+  +PF GS CF +AND L + G   +DWN+
Sbjct:    2 PLTDPVWSQALSPEFGKPYFVKLLAFLAKQAAAGKAIYPPKDKVFHALNTCPLDRVRVVILGQDPYHGPGQAHGLSFSVAQGVAQPPSLRNIVKEATACCGTKPTKNGCLTPWAVQGVLLLNTVLTVEKGAPLSHHKKGWEQFTDEVVRLLNRQERTIVFLLWGKPSQQKGAHINRARHRVITCSHPSPLGATKTKEPFTGSRCFARANDMLVKSGQEPIDWNL 225          
BLAST of mRNA_Ecto-sp9_F_contig1183.1511.1 vs.
Match: Uracil-DNA (glycosylase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RYA9_9STRA)

HSP 1 Score: 275 bits (704), Expect = 1.500e-88
Identity = 128/225 (56.89%), Postives = 161/225 (71.56%), Query Frame = 1
Query:  169 PIKEEGWATALSGETSKPYFGRLQAFLDKQYAS-KVIYPPRDKLFNAFDSCPLSNVKVVILGQDPYHQPGQAHGLAFSVMKGVMQPPSLRNMVKEAVSCCGITPTKSGNLDSWCSQGVLLLNTVLSVERSKANSHKNQGWEQFTDAVVRELNKGDRRLVFLLWGKPSQKKGALIDSSKHRVITCAHPSPLSATRKPDPFIGSECFKKANDALEELGHGGVDWNVL 840
            P     WA  +  E S+PYF  L  FL  + +  K ++PPR ++F+AF  C   NV+VVI+GQDPYH PGQAHGL+FSV  GV  PPSLRNM+KEA SC GI     GNL  W  QGVL+LN VL+VE  KANSH+ +GWEQFTDAV+R +NK +  +VFLLWGKP+Q+KG  I+ SKH VITC+HPSPL+A +  +PF+GS CF +AN+AL E+G   VDW +L
Sbjct:  105 PELPPSWAAVVDKEFSRPYFVNLVKFLKSEASKGKRVFPPRPEIFSAFSHCDFDNVRVVIIGQDPYHGPGQAHGLSFSVKHGVAVPPSLRNMIKEAQSCEGIAKPNHGNLTHWAKQGVLMLNAVLTVEAHKANSHQKKGWEQFTDAVIRAVNKREAGVVFLLWGKPAQEKGRSINRSKHTVITCSHPSPLAAMKTSEPFLGSRCFSRANEALVEMGQSKVDWRIL 329          
BLAST of mRNA_Ecto-sp9_F_contig1183.1511.1 vs.
Match: Uracil-DNA (glycosylase n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XWG6_9STRA)

HSP 1 Score: 260 bits (665), Expect = 2.260e-83
Identity = 125/223 (56.05%), Postives = 158/223 (70.85%), Query Frame = 1
Query:  172 IKEEGWATALSGETSKPYFGRLQAFLDKQYASKV-IYPPRDKLFNAFDSCPLSNVKVVILGQDPYHQPGQAHGLAFSVMKGVMQPPSLRNMVKEAVSCCGITPTKSGNLDSWCSQGVLLLNTVLSVERSKANSHKNQGWEQFTDAVVRELNKGDRRLVFLLWGKPSQKKGALIDSSKHRVITCAHPSPLSATRKPDPFIGSECFKKANDALEELGHGGVDWNV 837
            + E  W   L+ E  K YF +L+AFL ++   K  IYPP+  +F A + CP   +KVVI+GQDPYH PGQAHGL FSV +GV  PPSL+N+ KEA S  GI     G+L SWC+QGVLLLNTVL+V  S+ANSHK QGWE FTDAV+R +N+    +VFLLWGKP+Q KGALI  +KH +IT +HPSPL AT+  +PFIGS+CF +AN+ L + G   +DW V
Sbjct:   55 LTEPKWKDLLAPEFKKSYFKQLEAFLVREQKKKATIYPPKADIFAALNLCPFDGIKVVIIGQDPYHGPGQAHGLCFSVQRGVPPPPSLKNIYKEACSDVGIPKPSHGSLLSWCNQGVLLLNTVLTVRASEANSHKKQGWETFTDAVIRLVNEHATGVVFLLWGKPAQDKGALISRAKHCIITSSHPSPLGATKTNEPFIGSKCFSRANEYLTKSGKTPIDWTV 277          
BLAST of mRNA_Ecto-sp9_F_contig1183.1511.1 vs.
Match: Uracil-DNA (glycosylase n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024T8C9_9STRA)

HSP 1 Score: 258 bits (659), Expect = 2.010e-82
Identity = 122/223 (54.71%), Postives = 158/223 (70.85%), Query Frame = 1
Query:  172 IKEEGWATALSGETSKPYFGRLQAFLDKQYASKV-IYPPRDKLFNAFDSCPLSNVKVVILGQDPYHQPGQAHGLAFSVMKGVMQPPSLRNMVKEAVSCCGITPTKSGNLDSWCSQGVLLLNTVLSVERSKANSHKNQGWEQFTDAVVRELNKGDRRLVFLLWGKPSQKKGALIDSSKHRVITCAHPSPLSATRKPDPFIGSECFKKANDALEELGHGGVDWNV 837
            + E  W   L+ E    YF RL+ FL ++   K  I+PPR+++F A + CP   +KVVI+GQDPYH PGQAHGL FSV +GV  PPSL+N+ KEA S  GI   K G+L SWC+QGVL+LN VL+V  ++ANSHK QGWE FTDAV+R +N   + +VFLLWGKP+Q+KGALI  +KH V+T +HPSPL AT+  +PFIGS+CF KAN  L + G   +DW +
Sbjct:   58 LTEPKWTALLAPEFKMAYFRRLETFLAQEQKKKAAIFPPREEIFAALNLCPFDKIKVVIIGQDPYHGPGQAHGLCFSVARGVPPPPSLKNIYKEANSDIGIPIPKHGSLLSWCNQGVLMLNAVLTVRATEANSHKKQGWETFTDAVIRLINDQSQNVVFLLWGKPAQEKGALISRTKHCVLTSSHPSPLGATKTTEPFIGSKCFSKANAYLVQHGKDEIDWTL 280          
BLAST of mRNA_Ecto-sp9_F_contig1183.1511.1 vs.
Match: Uracil-DNA (glycosylase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GJU8_9STRA)

HSP 1 Score: 258 bits (659), Expect = 3.050e-82
Identity = 122/221 (55.20%), Postives = 158/221 (71.49%), Query Frame = 1
Query:  178 EEGWATALSGETSKPYFGRLQAFLDKQY-ASKVIYPPRDKLFNAFDSCPLSNVKVVILGQDPYHQPGQAHGLAFSVMKGVMQPPSLRNMVKEAVSCCGITPTKSGNLDSWCSQGVLLLNTVLSVERSKANSHKNQGWEQFTDAVVRELNKGDRRLVFLLWGKPSQKKGALIDSSKHRVITCAHPSPLSATRKPDPFIGSECFKKANDALEELGHGGVDWNV 837
            E GW   L  E  KPY+  L AFL ++  A K I+PP+  +F+A + CP   VKVVILGQDPYH PGQAHGLAFSV +G+  PPSLRNM KEA++   I+   +G+L  W  QGVLLLNTVL+V + +ANSHK++GWE+FTDA++R LNK    LVF+LWGK +QK  A +D SKH VIT +HPSPL A++  +PFIGS+CF +AN  LE+ G   ++W +
Sbjct:   73 EPGWQAQLGAEARKPYWRSLDAFLRQEAKAGKQIFPPKSMVFSALELCPFDKVKVVILGQDPYHGPGQAHGLAFSVQEGIAIPPSLRNMYKEAMTDVKISKPTTGSLVPWAKQGVLLLNTVLTVRKGEANSHKDRGWEKFTDAIIRSLNKNKNGLVFMLWGKHAQKVAAPVDRSKHLVITSSHPSPLGASKTKEPFIGSKCFSRANAYLEKKGKEPINWKI 293          
BLAST of mRNA_Ecto-sp9_F_contig1183.1511.1 vs.
Match: Uracil-DNA (glycosylase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2UDE2_HETAK)

HSP 1 Score: 256 bits (653), Expect = 8.910e-81
Identity = 124/220 (56.36%), Postives = 157/220 (71.36%), Query Frame = 1
Query:  187 WATALSGETSKPYFGRLQAFLD-KQYASKVIYPPRDKLFNAFDSCPLSNVKVVILGQDPYHQPGQAHGLAFSVMKGVMQPPSLRNMVKEAVSCCGITPTKS--GNLDSWCSQGVLLLNTVLSVERSKANSHKNQGWEQFTDAVVRELNKGDRRLVFLLWGKPSQKKGALIDSSKHRVITCAHPSPLSATRKPDPFIGSECFKKANDALEELGHGGVDWNV 837
            W   LS E SKPYF  L  F+  ++ + K+IYPP++ +F+A + CPL ++KVVI+GQDPYH P QAHG++FSV+ GV  PPSLRNM+KEAV    I P     G L +W  QGVLLLN VL+VE++ ANSH+ +GWEQFTDAV+RE+++     VFLLWGKP+Q K   ID  KHRVI  AHPSPLSAT+   PFIGS C+ +AN  L ELG   VDW++
Sbjct:  114 WHGVLSTEFSKPYFETLVGFIHGRRTSGKIIYPPQNMVFSALNECPLDSIKVVIIGQDPYHGPNQAHGMSFSVLPGVPHPPSLRNMIKEAVEDVSIQPPAKNYGYLINWSRQGVLLLNAVLTVEKASANSHQKKGWEQFTDAVIREVSRQSPGCVFLLWGKPAQAKARGIDRGKHRVIESAHPSPLSATKTNAPFIGSRCYSRANALLAELGREPVDWSI 333          
BLAST of mRNA_Ecto-sp9_F_contig1183.1511.1 vs.
Match: Uracil-DNA (glycosylase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0AAY8_9STRA)

HSP 1 Score: 253 bits (645), Expect = 2.110e-80
Identity = 120/223 (53.81%), Postives = 151/223 (67.71%), Query Frame = 1
Query:  172 IKEEGWATALSGETSKPYFGRLQAFLDKQYASKV-IYPPRDKLFNAFDSCPLSNVKVVILGQDPYHQPGQAHGLAFSVMKGVMQPPSLRNMVKEAVSCCGITPTKSGNLDSWCSQGVLLLNTVLSVERSKANSHKNQGWEQFTDAVVRELNKGDRRLVFLLWGKPSQKKGALIDSSKHRVITCAHPSPLSATRKPDPFIGSECFKKANDALEELGHGGVDWNV 837
            + E  W   L+ E  K YF  L  FL ++   K  IYPP+D++F A + CP   VKVVILGQDPYH PGQAHGL FSV K V  PPSLRN+ KEA+S   I     G L SWC QGVL+LNTVL+V  ++ NSHK QGWE FTD ++R++++    +VFLLWGKP+Q+K  LID SKH++ T +HPSPL AT+  +PFIGS CF K N+ L + G   +DW V
Sbjct:   50 LTEPKWREVLAQEFKKSYFKNLDTFLVQEQKKKAKIYPPKDEIFTALNLCPFDKVKVVILGQDPYHGPGQAHGLCFSVQKPVPPPPSLRNIYKEAMSDVKIPKPSHGCLLSWCHQGVLMLNTVLTVRAAEPNSHKKQGWENFTDVIIRKISQDSEGVVFLLWGKPAQEKIPLIDRSKHKIFTSSHPSPLGATKTAEPFIGSRCFSKTNEYLVQQGKEPIDWTV 272          
BLAST of mRNA_Ecto-sp9_F_contig1183.1511.1 vs.
Match: Uracil-DNA (glycosylase n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QHR0_SAPDV)

HSP 1 Score: 253 bits (646), Expect = 2.330e-80
Identity = 121/226 (53.54%), Postives = 154/226 (68.14%), Query Frame = 1
Query:  163 GSPIKEEGWATALSGETSKPYFGRLQAFLDKQYASK-VIYPPRDKLFNAFDSCPLSNVKVVILGQDPYHQPGQAHGLAFSVMKGVMQPPSLRNMVKEAVSCCGITPTKSGNLDSWCSQGVLLLNTVLSVERSKANSHKNQGWEQFTDAVVRELNKGDRRLVFLLWGKPSQKKGALIDSSKHRVITCAHPSPLSATRKPDPFIGSECFKKANDALEELGHGGVDWNV 837
            G  + E  W   L+ E  K YF  L AFL ++   K +I+PP+ ++F A + CP   +KVVILGQDPYH PGQAHGL FSV K V  PPSL+N+ KEA++   I     G L SWC QGVLLLNTVL+V  ++ANSHK QGWE FTD ++R+++K    +VFLLWGKP+Q+K ALID SKH ++T +HPSPL AT+  +PFIGS CF K N  L + G   +DW V
Sbjct:   61 GDLLTEPTWREMLAPEFKKSYFKSLDAFLVREQQKKAMIFPPKSEIFTALNLCPFDKIKVVILGQDPYHGPGQAHGLCFSVQKPVPPPPSLKNIYKEAIADVNIPKPSHGCLLSWCDQGVLLLNTVLTVRATEANSHKKQGWETFTDVIMRKISKETSGVVFLLWGKPAQEKSALIDRSKHCILTSSHPSPLGATKTAEPFIGSRCFSKTNAYLVQQGKDPIDWTV 286          
BLAST of mRNA_Ecto-sp9_F_contig1183.1511.1 vs.
Match: Uracil-DNA (glycosylase n=9 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H8I4_9STRA)

HSP 1 Score: 251 bits (640), Expect = 1.320e-79
Identity = 120/223 (53.81%), Postives = 154/223 (69.06%), Query Frame = 1
Query:  172 IKEEGWATALSGETSKPYFGRLQAFLDKQYASKV-IYPPRDKLFNAFDSCPLSNVKVVILGQDPYHQPGQAHGLAFSVMKGVMQPPSLRNMVKEAVSCCGITPTKSGNLDSWCSQGVLLLNTVLSVERSKANSHKNQGWEQFTDAVVRELNKGDRRLVFLLWGKPSQKKGALIDSSKHRVITCAHPSPLSATRKPDPFIGSECFKKANDALEELGHGGVDWNV 837
            + E  W   L+ E  K YF +L+AFLD++   K  I+PPR ++F A + CP  ++ VVI+GQDPYH PGQAHGL FSV +GV  PPSL+N+ KEA    GI     G+L SWC QGVL+LN VL+V  ++ANSHK QGWE FTDAV+R +N     +VFLLWGKP+Q+KGALI  +KH V+T +HPSPL AT+  +PFIGS+CF KAN  L       +DW +
Sbjct:   54 VTEPTWNDLLAPEFKKAYFKQLEAFLDREQKKKAAIFPPRHEIFAALNLCPFDSINVVIIGQDPYHGPGQAHGLCFSVARGVPPPPSLKNIYKEANKDVGIPVPTHGSLLSWCRQGVLMLNAVLTVRATEANSHKKQGWETFTDAVIRLVNDQADHVVFLLWGKPAQEKGALISRTKHCVLTSSHPSPLGATKTAEPFIGSKCFSKANAYLASHNKPEIDWTL 276          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1183.1511.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uracil-DNA4.460e-18396.43glycosylase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8... [more]
Uracil-DNA7.980e-9962.50glycosylase n=1 Tax=Tribonema minus TaxID=303371 R... [more]
Uracil-DNA1.500e-8856.89glycosylase n=1 Tax=Rhizochromulina marina TaxID=1... [more]
Uracil-DNA2.260e-8356.05glycosylase n=1 Tax=Aphanomyces euteiches TaxID=10... [more]
Uracil-DNA2.010e-8254.71glycosylase n=1 Tax=Aphanomyces invadans TaxID=157... [more]
Uracil-DNA3.050e-8255.20glycosylase n=1 Tax=Hondaea fermentalgiana TaxID=2... [more]
Uracil-DNA8.910e-8156.36glycosylase n=1 Tax=Heterosigma akashiwo TaxID=282... [more]
Uracil-DNA2.110e-8053.81glycosylase n=1 Tax=Thraustotheca clavata TaxID=74... [more]
Uracil-DNA2.330e-8053.54glycosylase n=1 Tax=Saprolegnia diclina (strain VS... [more]
Uracil-DNA1.320e-7953.81glycosylase n=9 Tax=Aphanomyces astaci TaxID=11209... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1183contigEcto-sp9_F_contig1183:21881..25701 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score515.0
Seed ortholog evalue2.2e-143
Seed eggNOG ortholog2880.D8LFW4
Preferred nameUNG1
KEGG rclassRC00040,RC00367
KEGG koko:K01946,ko:K03648,ko:K11400
KEGG ReactionR00742
KEGG Pathwayko00061,ko00254,ko00620,ko00640,ko01100,ko01110,ko03410,ko04152,ko04910,ko04920,ko04922,ko04931,ko05340,map00061,map00254,map00620,map00640,map01100,map01110,map03410,map04152,map04910,map04920,map04922,map04931,map05340
GOsGO:0000018,GO:0002200,GO:0002376,GO:0002377,GO:0002440,GO:0002520,GO:0002562,GO:0002566,GO:0002637,GO:0002639,GO:0002682,GO:0002684,GO:0002694,GO:0002696,GO:0002697,GO:0002699,GO:0002700,GO:0002702,GO:0002703,GO:0002705,GO:0002706,GO:0002708,GO:0002712,GO:0002714,GO:0002819,GO:0002821,GO:0002822,GO:0002824,GO:0002889,GO:0002891,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003824,GO:0004844,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0006139,GO:0006220,GO:0006244,GO:0006259,GO:0006281,GO:0006284,GO:0006285,GO:0006304,GO:0006310,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0007275,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009117,GO:0009166,GO:0009219,GO:0009223,GO:0009262,GO:0009264,GO:0009394,GO:0009893,GO:0009987,GO:0010604,GO:0010941,GO:0016444,GO:0016445,GO:0016446,GO:0016447,GO:0016787,GO:0016798,GO:0016799,GO:0018130,GO:0019104,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0031323,GO:0031325,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0033554,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042981,GO:0043021,GO:0043024,GO:0043066,GO:0043067,GO:0043069,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045008,GO:0045191,GO:0045830,GO:0045911,GO:0045935,GO:0046386,GO:0046434,GO:0046483,GO:0046700,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048731,GO:0048856,GO:0050776,GO:0050778,GO:0050789,GO:0050793,GO:0050794,GO:0050864,GO:0050865,GO:0050867,GO:0050871,GO:0050896,GO:0051052,GO:0051054,GO:0051094,GO:0051171,GO:0051173,GO:0051239,GO:0051240,GO:0051249,GO:0051251,GO:0051716,GO:0055086,GO:0060255,GO:0060548,GO:0065007,GO:0070013,GO:0071704,GO:0072527,GO:0072529,GO:0080090,GO:0090304,GO:0097159,GO:0097506,GO:0097510,GO:0140097,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:2000026
EggNOG free text desc.base-excision repair, AP site formation via deaminated base removal
EggNOG OGsCOG0692@1,KOG2994@2759
EC2.1.3.15,3.2.2.27,6.3.4.14,6.4.1.2
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionUracil-DNA glycosylase-like
Ec32 orthologEc-05_005280.1
Exons6
Model size843
Cds size843
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1183.1511.1prot_Ecto-sp9_F_contig1183.1511.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1183 21881..25701 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928442.1180758-CDS-Ecto-sp9_F_contig1183:21880..220431622928442.1180758-CDS-Ecto-sp9_F_contig1183:21880..22043Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1183 21881..22043 +
1692277872.8395877-CDS-Ecto-sp9_F_contig1183:21880..220431692277872.8395877-CDS-Ecto-sp9_F_contig1183:21880..22043Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1183 21881..22043 +
1622928442.131742-CDS-Ecto-sp9_F_contig1183:23027..232001622928442.131742-CDS-Ecto-sp9_F_contig1183:23027..23200Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1183 23028..23200 +
1692277872.851522-CDS-Ecto-sp9_F_contig1183:23027..232001692277872.851522-CDS-Ecto-sp9_F_contig1183:23027..23200Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1183 23028..23200 +
1622928442.1461802-CDS-Ecto-sp9_F_contig1183:23790..239101622928442.1461802-CDS-Ecto-sp9_F_contig1183:23790..23910Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1183 23791..23910 +
1692277872.8614702-CDS-Ecto-sp9_F_contig1183:23790..239101692277872.8614702-CDS-Ecto-sp9_F_contig1183:23790..23910Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1183 23791..23910 +
1622928442.1573322-CDS-Ecto-sp9_F_contig1183:24248..243731622928442.1573322-CDS-Ecto-sp9_F_contig1183:24248..24373Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1183 24249..24373 +
1692277872.8694322-CDS-Ecto-sp9_F_contig1183:24248..243731692277872.8694322-CDS-Ecto-sp9_F_contig1183:24248..24373Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1183 24249..24373 +
1622928442.1680002-CDS-Ecto-sp9_F_contig1183:24701..247891622928442.1680002-CDS-Ecto-sp9_F_contig1183:24701..24789Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1183 24702..24789 +
1692277872.8773222-CDS-Ecto-sp9_F_contig1183:24701..247891692277872.8773222-CDS-Ecto-sp9_F_contig1183:24701..24789Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1183 24702..24789 +
1622928442.1785145-CDS-Ecto-sp9_F_contig1183:25527..257011622928442.1785145-CDS-Ecto-sp9_F_contig1183:25527..25701Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1183 25528..25701 +
1692277872.8853095-CDS-Ecto-sp9_F_contig1183:25527..257011692277872.8853095-CDS-Ecto-sp9_F_contig1183:25527..25701Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1183 25528..25701 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1183.1511.1

>prot_Ecto-sp9_F_contig1183.1511.1 ID=prot_Ecto-sp9_F_contig1183.1511.1|Name=mRNA_Ecto-sp9_F_contig1183.1511.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=281bp
MPGTNSRTGANNGSSKRASPDSSSDAAAGTAASGGGLGSGEQAVSKRPKI
SCSEGSPIKEEGWATALSGETSKPYFGRLQAFLDKQYASKVIYPPRDKLF
NAFDSCPLSNVKVVILGQDPYHQPGQAHGLAFSVMKGVMQPPSLRNMVKE
AVSCCGITPTKSGNLDSWCSQGVLLLNTVLSVERSKANSHKNQGWEQFTD
AVVRELNKGDRRLVFLLWGKPSQKKGALIDSSKHRVITCAHPSPLSATRK
PDPFIGSECFKKANDALEELGHGGVDWNVL*
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mRNA from alignment at Ecto-sp9_F_contig1183:21881..25701+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1183.1511.1 ID=mRNA_Ecto-sp9_F_contig1183.1511.1|Name=mRNA_Ecto-sp9_F_contig1183.1511.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3821bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1183:21881..25701+ (Ectocarpus species9 EcSCA_722f female)
ATGCCGGGAACAAACAGCAGAACCGGCGCCAACAACGGCAGCTCGAAGCG CGCGTCGCCAGACAGCAGCAGTGATGCTGCAGCTGGAACAGCAGCATCGG GGGGTGGATTGGGGTCAGGCGAGCAGGCGGTATCCAAGCGGCCGAAGATC AGCTGCAGCGAAGGTAGGTGTGATGACTGAAGGGAGCCTTTGCTGTCATG CGAGAGTTCGGCCGAGAGACGGCTTCGGAGAATTCGACGCATGGCCATCA TGTATATGCATACGTAGGTCTCAGCACCGACTTCGCTCCATCGCCTCGCA TATGTTTTCGCTATACTCTGTATGGTCGTGTGGGTGACTCTCGTCCGAGG CTTGTATGGGCTCGCGAATCACAGAGGTTTTCAGTTTTCAGGGTATGTAT GATACCGGCATGTGTGCCTATTCGGACCCGTGCTGTGGATAGATGTGACG GCGGGAGACCCAGCTCCCAAAAAGGGGACCACCCACCGTACGGAGGTGTA GTAGACCACATCCACCACCAAGCAGTCGGAGACGATGTTGAGGACGAGCA ACCAGGATCGGCAACCTGTTGTTGTCAGCTGGATATTCTTCAAAATAGGT CGGATTGTTTGACGAGTTTTTTGCACAACATACACACCCCACGGCAGGCA AATTTGAAAGTTTGCTGGCACCGATTCTCCCAACCGACACGCTGCTGCGC GTGCTTGAGAAGATTTTGCCGTACTGCATTGCAATACATGCTCCCCGTTA TGCCTCAATGTATGGCTGAGGTCTTTGGCAGCATTGGAACCGATCTCCTG TGTGACAGGATAGACCAGGTTACAGCGTAACTTTGGGGGGTGGTATTCAA CGACATTGCGTCATGAATCGCGATACACACAGCCGTTCCGAGTACGAAGT ATTTTAGGATGGACTACCACCTTTCCAACTGCACAACAGGCGTGGGGGCG CCTATAAACAGCGTTTGCTGTATACCGACAAAGAAAAGGAGAACGAGCAA CATGTCAATAGTCCTCATGCCCGGCCCTACAATACACCCCGTGTTGATTC TGAATGATATTGGTTGTATAGCCTCCTACACACGAACGTTGTCGTAGTCC TCCAGCTGTAAAGCCAAAGCCGTTGTACCTTAACCTCGGACTTGCAGGCT CGCCTATCAAGGAAGAAGGGTGGGCGACGGCGCTGTCGGGGGAGACTTCC AAGCCGTACTTCGGCCGTCTACAGGCGTTCCTGGACAAGCAGTACGCCTC GAAGGTCATCTACCCGCCGAGGGACAAGCTGTTCAACGCCTTCGATTCAT GCCCGCTGAGTAACGTCAAGGTGCGGGCCGGCCACTTCTGTTCATCACGT GGTCGAGTCGAAGCATAAAGTTTGGGGATGGCGATTTTGGCAGTACATGG TTGGTTGTTGTGTACGGCCCAGTGCGCCGAGGCCGAGGTTCAGTCCACGA TCACCACGATTTCCTGAGCGATTTTTTTCAAAGAGTCTTCGGCGGGACCC TGTGGACCATGTCGTTTTAGATGCTGTTCGAGGGGATTATGGTTGTCTGC GTGTACATCAAGTGAGCCTTTGAATTGTGGTACGGAAAAGCCCCAGGAAG GCGAGAAAAAGTAAACCAAAAGTAGGCGCTTGCGCGACTTTGCCGCATGG CGAGTGTTTATTTTGCACCTGTGATTTACCATCTTCTTGTCGCGAATTTT CGACTAACGTGTTTTTGTGCAAGACAATTTTACCGCCGATGCTGCCTTCA CCTACATACCGACCACATGACTCGACAGCACGTTTTGATTGTTTCGCAAC TCATTGTTTTCATTTCTGGCTGTGTGATTCGTTCTGCCCGGTGCCGCTCT CTTGTTGTCCTTCTTTTGACGGCGGGTGGCGATGACGGTGGGGTGTGGGG GGGCACACAGGTGGTAATCTTGGGGCAGGACCCTTACCACCAGCCCGGGC AGGCGCACGGCCTGGCTTTCTCGGTGATGAAGGGGGTCATGCAACCGCCA AGCCTGCGGAACATGGTCAAGGAAGCCGTGGTGAGTGGAGCAAACTACAA AGTTGTTTTTTTTTTGTAGAGGCTTGGGCTGCGTTTGAATTTCGACGTCC GTGCTGTGGTAGAGGTGCTGCGTGTTTTCCAACGAGCAGAACACACACCT GTTATTGGACGATTTTGGAGAGGCTCCTGACGTGGCGAGCTGCTGCCGAC CGCGTGCTTGCGCATGTGAGTGGAGCTGAAAGGGAAATCCGAGAGCCGGA ATTCGCTGTGGTGAAGGTGGCTGTTCTATAAATAGATCGATGTTCCCTTT CTTCAGCGACTCAACGTAAAACAGACACACCCACACCCTTCGATGCCGTT TTTGTGTTGTCTGCTTAGAGCTGCTGCGGCATCACGCCCACCAAGTCCGG GAACCTGGACAGCTGGTGCAGCCAGGGGGTCCTGCTGCTCAACACGGTGC TGAGCGTCGAGAGGTCCAAGGCTAACTCGCACAAGAACCAAGGGTGCGCT TGAGGAACAACTGCTCGTTGCTTCGCACAATCCTATTTTCTTCTACATCG TCGGCGTGGCCTTCGTGTTGGCGTCTTTGTCCTCGATGCGGTTCGCGAGG ATGTTCCCCGTCCGTTTTACCCGCCTCTTCTCAATTTTCCTTCTTCTCCC GCTACGAAATCGGATCGATTGCTGGTTAGCGCGCCTCATGAGACAAGAAG CACCACGCTTGAAACAACCGGGTCAATTTGCACGAACTCCAAACTTTTTT ATTCGCTCTCGCTGCCTTGTCCTACACCTTTACCTCCCCGATGGATTCGG GATATATCTTGGACCCGCCAGGTGGGAACAGTTTACGGACGCGGTGGTGC GCGAGCTGAACAAGGGTGATCGGCGGTTGGTCTTCCTGCTGTGGGGAAAG CCTTCCCAGGTGGGCGCTTGCTTCCGAAGCCGGGTCTCGCAGAAGTTGGT GCTGTTCTTACTCGGTCTAAGAAGCCGAAATTGACCCGCTAGACTCGTCA GCGCTGACTAGTCTATTGGTTTGATTTCGGCTTCTACATCTCGGCATTTT TTGTACAAGCCTAACGCCGCTTTCACCTAGCGTTTCGTTTGTGTTGAAGA CCGGGATGGTGGTGGTGGTTCTTCCCTCTTTTGGGGTCAGCCTTCCCGGG TGCGACTCTGCTCCCCACAAGGCCGACAATGTCAATCGTGTCTTACCGGT AGATCCGTGGCTGCCAAACTGCTAGTTTGTTCGGCCTTTCGAAAGCCTCA TGTACGGCGGCCGTGTCAGCCGGTGTTAGTTTTTTTCGCTCGAACGTACA GTGTCTTCCCCTGTGCTCGTGCAGGGTTTAAACCCGGAGGTGTTGGAAGA TCAGCCTGCCACTATTTGCAGAAATGGCCGCCCTCTGGTGATCCCTTCCC CTCCCCCACTCCACACTGCACCGAGAAGAGTCGTCAGGAATGCCGCGGAT CCAAGTCACCTCCACCCACCTTTTCGGCTTCCGTGTTTTGTGTTTGCTGT CTTATCTGTCTGTCTGTCTGTTTGTCTTCCTGCATCCCTGTTTGTCTGTC TGCCTGTCATTCCTGTCTCTCATTCTGTCCGTCTGTCATTCTGTCTGTGT TCCTGCTTTTCTCTCGCTGCCTCCCTTCCCCCCCCTGTCGATCGCAGAAA AAGGGTGCGCTGATAGACTCGTCCAAGCACCGCGTTATCACGTGCGCGCA CCCTTCCCCCCTCTCGGCCACGAGGAAGCCGGACCCGTTCATCGGATCGG AGTGCTTCAAGAAGGCCAACGATGCCCTCGAAGAGCTTGGACACGGCGGC GTGGACTGGAATGTGCTTTGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1183:21881..25701+

>mRNA_Ecto-sp9_F_contig1183.1511.1 ID=mRNA_Ecto-sp9_F_contig1183.1511.1|Name=mRNA_Ecto-sp9_F_contig1183.1511.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1686bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1183:21881..25701+ (Ectocarpus species9 EcSCA_722f female)
ATGCCGGGAACAAACAGCAGAACCGGCGCCAACAACGGCAGCTCGAAGCG
CGCGTCGCCAGACAGCAGCAGTGATGCTGCAGCTGGAACAGCAGCATCGG
GGGGTGGATTGGGGTCAGGCGAGCAGGCGGTATCCAAGCGGCCGAAGATC
AGCTGCAGCGAAGATGCCGGGAACAAACAGCAGAACCGGCGCCAACAACG
GCAGCTCGAAGCGCGCGTCGCCAGACAGCAGCAGTGATGCTGCAGCTGGA
ACAGCAGCATCGGGGGGTGGATTGGGGTCAGGCGAGCAGGCGGTATCCAA
GCGGCCGAAGATCAGCTGCAGCGAAGGCTCGCCTATCAAGGAAGAAGGGT
GGGCGACGGCGCTGTCGGGGGAGACTTCCAAGCCGTACTTCGGCCGTCTA
CAGGCGTTCCTGGACAAGCAGTACGCCTCGAAGGTCATCTACCCGCCGAG
GGACAAGCTGTTCAACGCCTTCGATTCATGCCCGCTGAGTAACGTCAAGG
CTCGCCTATCAAGGAAGAAGGGTGGGCGACGGCGCTGTCGGGGGAGACTT
CCAAGCCGTACTTCGGCCGTCTACAGGCGTTCCTGGACAAGCAGTACGCC
TCGAAGGTCATCTACCCGCCGAGGGACAAGCTGTTCAACGCCTTCGATTC
ATGCCCGCTGAGTAACGTCAAGGTGGTAATCTTGGGGCAGGACCCTTACC
ACCAGCCCGGGCAGGCGCACGGCCTGGCTTTCTCGGTGATGAAGGGGGTC
ATGCAACCGCCAAGCCTGCGGAACATGGTCAAGGAAGCCGTGGTGGTAAT
CTTGGGGCAGGACCCTTACCACCAGCCCGGGCAGGCGCACGGCCTGGCTT
TCTCGGTGATGAAGGGGGTCATGCAACCGCCAAGCCTGCGGAACATGGTC
AAGGAAGCCGTGAGCTGCTGCGGCATCACGCCCACCAAGTCCGGGAACCT
GGACAGCTGGTGCAGCCAGGGGGTCCTGCTGCTCAACACGGTGCTGAGCG
TCGAGAGGTCCAAGGCTAACTCGCACAAGAACCAAGGAGCTGCTGCGGCA
TCACGCCCACCAAGTCCGGGAACCTGGACAGCTGGTGCAGCCAGGGGGTC
CTGCTGCTCAACACGGTGCTGAGCGTCGAGAGGTCCAAGGCTAACTCGCA
CAAGAACCAAGGGTGGGAACAGTTTACGGACGCGGTGGTGCGCGAGCTGA
ACAAGGGTGATCGGCGGTTGGTCTTCCTGCTGTGGGGAAAGCCTTCCCAG
GTGGGAACAGTTTACGGACGCGGTGGTGCGCGAGCTGAACAAGGGTGATC
GGCGGTTGGTCTTCCTGCTGTGGGGAAAGCCTTCCCAGAAAAAGGGTGCG
CTGATAGACTCGTCCAAGCACCGCGTTATCACGTGCGCGCACCCTTCCCC
CCTCTCGGCCACGAGGAAGCCGGACCCGTTCATCGGATCGGAGTGCTTCA
AGAAGGCCAACGATGCCCTCGAAGAGCTTGGACACGGCGGCGTGGACTGG
AATGTGCTTTGAAAAAAGGGTGCGCTGATAGACTCGTCCAAGCACCGCGT
TATCACGTGCGCGCACCCTTCCCCCCTCTCGGCCACGAGGAAGCCGGACC
CGTTCATCGGATCGGAGTGCTTCAAGAAGGCCAACGATGCCCTCGAAGAG
CTTGGACACGGCGGCGTGGACTGGAATGTGCTTTGA
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