mRNA_Ecto-sp9_F_contig11814.1496.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11814.1496.1
Unique NamemRNA_Ecto-sp9_F_contig11814.1496.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11814.1496.1 vs.
Match: Geranylgeranyl (pyrophosphate synthase, chloroplast n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWT5_ECTSI)

HSP 1 Score: 369 bits (946), Expect = 1.210e-126
Identity = 239/265 (90.19%), Postives = 242/265 (91.32%), Query Frame = 1 
Query:    1 MKGVAVAAIAAGCVCSTXXXXXXXXXXXXXXXXXXXXXXSRKGAXXXXXXXXXXXXXXTLRCAAAATDFDLKTYLGTKKDSVDKALDKAVVSTMPQTDQVCGRRLSGVPADQECIGWYLLAWRTERKVSLALGRGQRGVWTAVSRASMRYSLMAGGKRVRPILTIAACEMFGGSMEAAMPTAVSTEMIHTMSLIHDDLPAMDDDDLRRRVFFLRGGGMPTCHVKYGEDIAILAGDALLSKSFEHCAKLLLLLLRSSLLSLAFVVW 795
            MKGVAVAAIAAGCVCSTXXXXXXXXXXXXXXXXXXXXXX     XXXXXXXXXXXXXXTLRCAAAATDFDLKTYLGTKKDSVDKALDKAVVSTMPQTDQ     +SGVP DQ+CIGW LLAWRTERK SLALGRGQRGVWTAVSRAS+ YSLMAGGKRVRPILTIAACEMFGGSMEAAMPTAVSTEMIHTMSLIHDDLPAMDDDDLRR        GMPTCHVKYGEDIAILAGDALLSKSFEHCAKLLLLLL SSLLSLAFVVW
Sbjct:    1 MKGVAVAAIAAGCVCSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLRCAAAATDFDLKTYLGTKKDSVDKALDKAVVSTMPQTDQDV---VSGVPTDQKCIGWCLLAWRTERKASLALGRGQRGVWTAVSRASIHYSLMAGGKRVRPILTIAACEMFGGSMEAAMPTAVSTEMIHTMSLIHDDLPAMDDDDLRR--------GMPTCHVKYGEDIAILAGDALLSKSFEHCAKLLLLLLLSSLLSLAFVVW 254
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11814.1496.1 vs.
Match: Hypothetical (protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FLB2_9STRA)

HSP 1 Score: 158 bits (399), Expect = 8.300e-43
Identity = 78/101 (77.23%), Postives = 86/101 (85.15%), Query Frame = 1 
Query:  439 SMRYSLMAGGKRVRPILTIAACEMFGGSMEAAMPTAVSTEMIHTMSLIHDDLPAMDDDDLRRRVFFLRGGGMPTCHVKYGEDIAILAGDALLSKSFEHCAK 741
            SMRYSLMAGGKR+RPI+ IAACEMFGGS + AMPTAV+ EMIHTMSL+HDDLPAMDDDDLRR        G+PT HV YGEDIAILAGDALLS +FEHCA+
Sbjct:   87 SMRYSLMAGGKRIRPIMAIAACEMFGGSQDVAMPTAVAVEMIHTMSLVHDDLPAMDDDDLRR--------GVPTNHVVYGEDIAILAGDALLSTAFEHCAR 179
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11814.1496.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1Y7_9STRA)

HSP 1 Score: 151 bits (382), Expect = 3.130e-41
Identity = 75/100 (75.00%), Postives = 86/100 (86.00%), Query Frame = 1 
Query:  442 MRYSLMAGGKRVRPILTIAACEMFGGSMEAAMPTAVSTEMIHTMSLIHDDLPAMDDDDLRRRVFFLRGGGMPTCHVKYGEDIAILAGDALLSKSFEHCAK 741
            MRYSL+AGGKR+RPILT+AACEMFGGS+E+AMPTAV+ EMIHTMSLIHDDLP+MD+DDLRR        G PTCHV YGED AILAGDA+LS SFE+ A+
Sbjct:    1 MRYSLLAGGKRIRPILTLAACEMFGGSVESAMPTAVALEMIHTMSLIHDDLPSMDNDDLRR--------GRPTCHVVYGEDNAILAGDAMLSTSFEYVAR 92
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11814.1496.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y0W2_AURAN)

HSP 1 Score: 151 bits (381), Expect = 4.230e-40
Identity = 76/100 (76.00%), Postives = 84/100 (84.00%), Query Frame = 1 
Query:  439 SMRYSLMAGGKRVRPILTIAACEMFGGSMEAAMPTAVSTEMIHTMSLIHDDLPAMDDDDLRRRVFFLRGGGMPTCHVKYGEDIAILAGDALLSKSFEHCA 738
            SMRYSL+AGGKRVRP++ IAACEMFGG+   AMPTAV+ EMIHTMSLIHDDLPAMD+DDLRR        GMPT HV YG+D+AILAGDALLS SFEHCA
Sbjct:   90 SMRYSLLAGGKRVRPVMCIAACEMFGGTEAMAMPTAVAIEMIHTMSLIHDDLPAMDNDDLRR--------GMPTNHVIYGDDVAILAGDALLSTSFEHCA 181
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11814.1496.1 vs.
Match: Hypothetical (protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q3N6_9STRA)

HSP 1 Score: 150 bits (378), Expect = 9.350e-40
Identity = 81/130 (62.31%), Postives = 94/130 (72.31%), Query Frame = 1 
Query:  352 YLLAWRTERKVSLALGRGQRGVWTAVSRASMRYSLMAGGKRVRPILTIAACEMFGGSMEAAMPTAVSTEMIHTMSLIHDDLPAMDDDDLRRRVFFLRGGGMPTCHVKYGEDIAILAGDALLSKSFEHCAK 741
            YLL+ + + + SL          T     SM YSLMAGGKR+RP+L IAACEMFGGS EAAMPTAV+ EMIHTMSLIHDDLP+MD+DDLRR        G PT H+ YGED+AILAGDALLS SF+H A+
Sbjct:   53 YLLSKKDDIEASLKASVKSTTPQTDKICESMDYSLMAGGKRIRPVLCIAACEMFGGSQEAAMPTAVALEMIHTMSLIHDDLPSMDNDDLRR--------GKPTNHIIYGEDVAILAGDALLSTSFQHVAE 174
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11814.1496.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A4A8_TRICV)

HSP 1 Score: 147 bits (371), Expect = 1.070e-39
Identity = 80/130 (61.54%), Postives = 93/130 (71.54%), Query Frame = 1 
Query:  352 YLLAWRTERKVSLALGRGQRGVWTAVSRASMRYSLMAGGKRVRPILTIAACEMFGGSMEAAMPTAVSTEMIHTMSLIHDDLPAMDDDDLRRRVFFLRGGGMPTCHVKYGEDIAILAGDALLSKSFEHCAK 741
            YLL+ +   + +L       G  T     SM YSLMAGGKR+RP+L +AACEMFGG+ E AMPTAV+ EMIHTMSLIHDDLP+MD+DDLRR        G PT HV YGED+AILAGDALLS SFEH A+
Sbjct:   54 YLLSKKGPIEAALEASVRSTGPNTDKICESMSYSLMAGGKRIRPVLCLAACEMFGGTEERAMPTAVALEMIHTMSLIHDDLPSMDNDDLRR--------GKPTNHVIYGEDVAILAGDALLSTSFEHVAR 175
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11814.1496.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RH45_9STRA)

HSP 1 Score: 149 bits (377), Expect = 1.280e-39
Identity = 75/101 (74.26%), Postives = 84/101 (83.17%), Query Frame = 1 
Query:  439 SMRYSLMAGGKRVRPILTIAACEMFGGSMEAAMPTAVSTEMIHTMSLIHDDLPAMDDDDLRRRVFFLRGGGMPTCHVKYGEDIAILAGDALLSKSFEHCAK 741
            SMRYSL+AGGKRVRPI+ IAACEM GG+ E AMPTAV+ EMIHTMSL+HDDLP+MD+DDLRR        G PT HV +GEDIAILAGDALLS +FEHCAK
Sbjct:   81 SMRYSLLAGGKRVRPIMCIAACEMLGGTQEMAMPTAVAIEMIHTMSLVHDDLPSMDNDDLRR--------GKPTNHVLFGEDIAILAGDALLSTAFEHCAK 173
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11814.1496.1 vs.
Match: Hypothetical (protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QC60_9STRA)

HSP 1 Score: 150 bits (379), Expect = 1.610e-39
Identity = 91/188 (48.40%), Postives = 109/188 (57.98%), Query Frame = 1 
Query:  193 AATDFDLKTYLGTKKDSVDKALDKAVVSTMPQTDQVCGRRLSGVPADQECIGWYLLAWRTERKVSLALGRGQRGVWTAVSRASMRYSLMAGGKRVRPILTIAACEMFG--GSMEA---AMPTAVSTEMIHTMSLIHDDLPAMDDDDLRRRVFFLRGGGMPTCHVKYGEDIAILAGDALLSKSFEHCAK 741
            AAT FDL  Y+ +K  +++ AL+ +V ST P+TD++C                                             SM YSLMAGGKR+RP+L IAACEMF   G  EA   AMPTAV+ EMIHTMSLIHDDLP+MD+DDLRR        G PT HV YGED+AILAGDALLS SF+H A+
Sbjct:   78 AATSFDLNEYIASKLGAIEAALEASVKSTTPETDKIC--------------------------------------------ESMGYSLMAGGKRIRPVLCIAACEMFDKDGKEEAEKKAMPTAVALEMIHTMSLIHDDLPSMDNDDLRR--------GKPTNHVVYGEDVAILAGDALLSTSFQHVAE 213
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11814.1496.1 vs.
Match: Farnesyltransferase (n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD72_9STRA)

HSP 1 Score: 148 bits (373), Expect = 1.860e-39
Identity = 78/101 (77.23%), Postives = 84/101 (83.17%), Query Frame = 1 
Query:  439 SMRYSLMAGGKRVRPILTIAACEMFGGSMEAAMPTAVSTEMIHTMSLIHDDLPAMDDDDLRRRVFFLRGGGMPTCHVKYGEDIAILAGDALLSKSFEHCAK 741
            SM+YSLMAGGKRVRPIL IAACEMFGG+ E AMPTAV+ EMIH+MSLIHDDLPAMD+DDLRR        G PT HV YGE +AILAGDALLSKSFEH AK
Sbjct:   39 SMKYSLMAGGKRVRPILCIAACEMFGGTDEDAMPTAVALEMIHSMSLIHDDLPAMDNDDLRR--------GKPTNHVVYGEAMAILAGDALLSKSFEHVAK 131
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11814.1496.1 vs.
Match: Hypothetical (protein n=2 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3YD71_9EUKA)

HSP 1 Score: 148 bits (373), Expect = 1.150e-38
Identity = 76/101 (75.25%), Postives = 83/101 (82.18%), Query Frame = 1 
Query:  439 SMRYSLMAGGKRVRPILTIAACEMFGGSMEAAMPTAVSTEMIHTMSLIHDDLPAMDDDDLRRRVFFLRGGGMPTCHVKYGEDIAILAGDALLSKSFEHCAK 741
            +MRYSL+AGGKRVRP L IAACEM GG+ E  MP+AV+ EMIHTMSLIHDDLPAMD+DDLRR        GMPT HVKYGEDIAILAGDALLS+SF H AK
Sbjct:  119 AMRYSLLAGGKRVRPALCIAACEMLGGTEEMCMPSAVALEMIHTMSLIHDDLPAMDNDDLRR--------GMPTSHVKYGEDIAILAGDALLSESFAHVAK 211
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11814.1496.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Geranylgeranyl1.210e-12690.19pyrophosphate synthase, chloroplast n=1 Tax=Ectoca... [more]
Hypothetical8.300e-4377.23protein n=1 Tax=Dictyocha speculum TaxID=35687 Rep... [more]
Hypothetical3.130e-4175.00protein n=1 Tax=Fibrocapsa japonica TaxID=94617 Re... [more]
Uncharacterized4.230e-4076.00protein n=1 Tax=Aureococcus anophagefferens TaxID=... [more]
Hypothetical9.350e-4062.31protein n=1 Tax=Chaetoceros debilis TaxID=122233 R... [more]
Hypothetical1.070e-3961.54protein (Fragment) n=1 Tax=Trieres chinensis TaxID... [more]
Hypothetical1.280e-3974.26protein n=1 Tax=Rhizochromulina marina TaxID=10348... [more]
Hypothetical1.610e-3948.40protein n=1 Tax=Ditylum brightwellii TaxID=49249 R... [more]
Farnesyltransferase1.860e-3977.23n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z... [more]
Hypothetical1.150e-3875.25protein n=2 Tax=Lotharella globosa TaxID=91324 Rep... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11814contigEcto-sp9_F_contig11814:715..3396 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score369.8
Seed ortholog evalue1.1e-99
Seed eggNOG ortholog2880.D7FWT5
Preferred nameGGPS1
KEGG rclassRC00279
KEGG koko:K13789
KEGG ReactionR01658,R02003,R02061
KEGG Pathwayko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130
KEGG ModuleM00364,M00366
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0004161,GO:0004311,GO:0004659,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005783,GO:0005829,GO:0006629,GO:0006720,GO:0007275,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0009058,GO:0009507,GO:0009513,GO:0009536,GO:0009790,GO:0009791,GO:0009793,GO:0009987,GO:0010154,GO:0012505,GO:0016740,GO:0016765,GO:0022414,GO:0032501,GO:0032502,GO:0042214,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043692,GO:0043693,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0046246,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0061458,GO:0071704,GO:1901576
EggNOG free text desc.isoprenoid biosynthetic process
EggNOG OGsCOG0142@1,KOG0776@2759
EC2.5.1.1,2.5.1.10,2.5.1.29
COG Functional cat.H
BiGG ReactioniRC1080.CRv4_Au5_s12_g2763_t1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01006
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptiongeranylgeranyl pyrophosphate synthase, chloroplast precursor
Ec32 orthologEc-16_004320.1
Exons6
Model size795
Cds size795
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11814.1496.1prot_Ecto-sp9_F_contig11814.1496.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11814 715..3396 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928440.37623-CDS-Ecto-sp9_F_contig11814:714..9321622928440.37623-CDS-Ecto-sp9_F_contig11814:714..932Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11814 715..932 +
1692277872.2067773-CDS-Ecto-sp9_F_contig11814:714..9321692277872.2067773-CDS-Ecto-sp9_F_contig11814:714..932Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11814 715..932 +
1622928440.3915758-CDS-Ecto-sp9_F_contig11814:1743..18291622928440.3915758-CDS-Ecto-sp9_F_contig11814:1743..1829Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11814 1744..1829 +
1692277872.2196763-CDS-Ecto-sp9_F_contig11814:1743..18291692277872.2196763-CDS-Ecto-sp9_F_contig11814:1743..1829Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11814 1744..1829 +
1622928440.406644-CDS-Ecto-sp9_F_contig11814:2089..22241622928440.406644-CDS-Ecto-sp9_F_contig11814:2089..2224Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11814 2090..2224 +
1692277872.22918-CDS-Ecto-sp9_F_contig11814:2089..22241692277872.22918-CDS-Ecto-sp9_F_contig11814:2089..2224Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11814 2090..2224 +
1622928440.439171-CDS-Ecto-sp9_F_contig11814:2498..27061622928440.439171-CDS-Ecto-sp9_F_contig11814:2498..2706Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11814 2499..2706 +
1692277872.2394397-CDS-Ecto-sp9_F_contig11814:2498..27061692277872.2394397-CDS-Ecto-sp9_F_contig11814:2498..2706Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11814 2499..2706 +
1622928440.4593778-CDS-Ecto-sp9_F_contig11814:3194..32881622928440.4593778-CDS-Ecto-sp9_F_contig11814:3194..3288Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11814 3195..3288 +
1692277872.249823-CDS-Ecto-sp9_F_contig11814:3194..32881692277872.249823-CDS-Ecto-sp9_F_contig11814:3194..3288Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11814 3195..3288 +
1622928440.4742584-CDS-Ecto-sp9_F_contig11814:3342..33961622928440.4742584-CDS-Ecto-sp9_F_contig11814:3342..3396Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11814 3343..3396 +
1692277872.2627156-CDS-Ecto-sp9_F_contig11814:3342..33961692277872.2627156-CDS-Ecto-sp9_F_contig11814:3342..3396Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11814 3343..3396 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11814.1496.1

>prot_Ecto-sp9_F_contig11814.1496.1 ID=prot_Ecto-sp9_F_contig11814.1496.1|Name=mRNA_Ecto-sp9_F_contig11814.1496.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=265bp
MKGVAVAAIAAGCVCSTTTTTAFIVGGGGPVASSVRSSNSRKGASTGRRA
SARRGGASTLRCAAAATDFDLKTYLGTKKDSVDKALDKAVVSTMPQTDQV
CGRRLSGVPADQECIGWYLLAWRTERKVSLALGRGQRGVWTAVSRASMRY
SLMAGGKRVRPILTIAACEMFGGSMEAAMPTAVSTEMIHTMSLIHDDLPA
MDDDDLRRRVFFLRGGGMPTCHVKYGEDIAILAGDALLSKSFEHCAKLLL
LLLRSSLLSLAFVVW
back to top

mRNA from alignment at Ecto-sp9_F_contig11814:715..3396+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11814.1496.1 ID=mRNA_Ecto-sp9_F_contig11814.1496.1|Name=mRNA_Ecto-sp9_F_contig11814.1496.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2682bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11814:715..3396+ (Ectocarpus species9 EcSCA_722f female)
ATGAAGGGCGTAGCGGTGGCAGCGATCGCCGCAGGGTGCGTTTGCTCGAC
AACGACAACGACCGCCTTCATCGTGGGAGGAGGAGGTCCGGTCGCTTCTT
CCGTACGCAGCAGCAACAGCAGGAAAGGGGCATCCACGGGCAGGCGTGCT
TCGGCCAGGCGGGGGGGTGCTTCCACCCTGCGGTGCGCGGCGGCCGCTAC
CGACTTCGACCTCAAGACGTAAGGAATACTGCTGTGCGGTGCATATTTTA
CCGTATTAGAAGTACATACATTTCTGTGGGATCCGTGCCTACGCCTGGGT
GTACACTGTGTAATTCTTCTGTTGCTAGCATCGACCGCGCTAACGGGCTG
ACACCGATGGCTGTACACGTACCAACTACTTACGTCCTTATTTCGACGGG
GGTTCGTGTGTGCACATACTGACTTGTAAAGAGTAAAGAATTTATCAATT
TTGCATTATTTATTTGAGGGTGTTTTGGCTTGTCAAGTTGGCAGTGGCAG
GGGTTCCGCGGAACGGACTTAGGGGAGGTATCACTGGTACGCTGCTCGGA
GAATAGTAAAAACACAGGTGTTTATAGTATTGCCTCCGCTAACGCCATGG
GTTTCATTGCTATTATTAATAGTAATTTATCCTGGACTCTTTCCCGTGGA
ATAGAGATCGATTCGTTGTGTTACAATGAGGAAAAAAAATACGGGAACTT
TGTCTGCGGAACAAGAGTACTGTATACAAGAAAGCTGTTGCTGCCGTTTG
TCGGACTATGGTTGTCAGCGTCGTCCGTTCCCGCCATCCTACTACTAGCC
TGGCGGTGCAATTGTCTTTTAGGCCAGGCGTGCCGGGTGGCCAGTCCGAC
TTTCTTTGCTTCGTTCTCCGCGCGCTTATATCAACCCATGCTCGTGTGCG
GCATGGTGCGATGGTGGCCGGGTACTTAATGGCCGTGTTGTACTACTGCG
GGTGTCGTCCCTTCCCATGCTCGTGTGCTGAACGATGAGCCATGATCGTG
GTGGTGTACTTGATGGCTGTGCTGTGCAGTTACCTGGGTACGAAGAAGGA
TTCGGTGGACAAGGCCCTCGACAAGGCTGTCGTGTCTACGATGCCCCAGA
CAGACCAGGTGTGCGGTGCCTGGCGTATTAACGTTTTCGTTTTTGAGCGA
AGAAGGTGTGCGGTGGTGTGTAGGCGTTGCGTTTGAGCGAAGGAGAAGTT
AGCATCGAAGAAGGAAGTGCGTACAAGTATTGCCGCGGAGGTTTAGTTTT
TTGCGGGAAATGAGGAGGGGGGGCAGAGGGTGAAGGAGATCGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAATGAAAGAAAGAAAGAAAGAAGGAA
AGAGAGACTTAATTTTCTACGACAGGACGTCGTTTATCTGGGGTGCCAGC
GGATCAGGAGTGCATCGGCTGGTACTTGCTTGCTTGGCGTACAGAGCGAA
AAGTGTCACTCGCTTTGGGAAGAGGGCAAAGGGGGGTATGGACTGCAGTT
TCGCGTGCGTGTGGGTTTTCGAGTTTTCCACGATGCCACAAACGGTGTAC
ACTCACAATTTGCTTCACTTTGTAGTGGTCGACGGAGACATGATTTCACG
ACTATTCTCTGACACCGGCTCCGCCCATCTCGAAGCCAGTAAATCCCCAC
CTCACCCCCCCCCGCACACAACAAGTACCAAGCAGGGATAAAAAAAAAAC
CTCCCCCTACCCCCCTACCCCCCTACCCCCTCACACCCTGATCCCACCCC
AATCCCCCCCCTTTTTTTCTTCAGATATGCGAAGCGATGCGCTACTCCCT
GATGGCCGGGGGCAAGCGCGTGCGGCCCATCCTCACCATCGCCGCCTGCG
AGATGTTCGGGGGCTCGATGGAGGCCGCCATGCCCACCGCCGTGAGCACG
GAGATGATCCACACCATGTCTCTAATCCACGACGACCTTCCCGCAATGGA
TGACGACGACCTTCGCAGGCGTGTTTTTTTTTTGCGGGGGGGGTTCGATA
GTGTTTCGCTGTTTTTCTCTTGGTTGGATTTTGTTTCGCTCAATCTTGTG
TATCTGTTCGGTGTAGATACAGGCGTGTTTTTTTTTTTTCTTTTTTCTTC
AAGCTTGTTTGTGTAAATCTTGTATCTTGTCGGATTTGGATGCCGGCATG
TCTTGTCTTGCTTTTTTCGTTCCACGCCTGTAGTCGATAAATCTTGTATC
TATCTCGTCAGTATTATATTTCGACTATGTACTTCGACCTACATGTAAAC
ACGACTCAAGGGCTGCTACTGCTGCTGTGTGTGTTCGTGCCATCTATGAT
TTGAAGTGAAGACAAAAAAGAGAAAAGTTCTGTCGCCAGTCTACACACCT
GCTGCTGTTGCCGTGTGTTTCTGTTGTCTTTCAACGGCGCTGCGACAAGA
ATTCGTCCAATCTAGACTATAACCAATCGCGGCGGCGTAGCTGGTGTTTT
TTTAACTTGATTTTTGTGTTGCTCTTGCAGGGGAATGCCGACGTGCCACG
TGAAGTACGGGGAGGACATCGCCATCCTCGCAGGCGACGCGCTCTTGTCC
AAGTCTTTCGAGCACTGCGCCAAGGTGTCAGAACGCTTTTCAATGTTGTT
GTTGTATGCTGCTGCTGCTGATTGGTAGTTGTTGCTGCTTTTGTTGCGGT
CGTCGTTGTTGTCGTTGGCTTTCGTTGTGTGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11814:715..3396+

>mRNA_Ecto-sp9_F_contig11814.1496.1 ID=mRNA_Ecto-sp9_F_contig11814.1496.1|Name=mRNA_Ecto-sp9_F_contig11814.1496.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1590bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11814:715..3396+ (Ectocarpus species9 EcSCA_722f female)
ATGAAGGGCGTAGCGGTGGCAGCGATCGCCGCAGGGTGCGTTTGCTCGAC
AACGACAACGACCGCCTTCATCGTGGGAGGAGGAGGTCCGGTCGCTTCTT
CCGTACGCAGCAGCAACAGCAGGAAAGGGGCATCCACGGGCAGGCGTGCT
TCGGCCAGGCGGGGGGGTGCTTCCACCCTGCGGTGCGCGGCGGCCGCTAC
CGACTTCGACCTCAAGACATGAAGGGCGTAGCGGTGGCAGCGATCGCCGC
AGGGTGCGTTTGCTCGACAACGACAACGACCGCCTTCATCGTGGGAGGAG
GAGGTCCGGTCGCTTCTTCCGTACGCAGCAGCAACAGCAGGAAAGGGGCA
TCCACGGGCAGGCGTGCTTCGGCCAGGCGGGGGGGTGCTTCCACCCTGCG
GTGCGCGGCGGCCGCTACCGACTTCGACCTCAAGACTTACCTGGGTACGA
AGAAGGATTCGGTGGACAAGGCCCTCGACAAGGCTGTCGTGTCTACGATG
CCCCAGACAGACCAGGTGTGCGTTACCTGGGTACGAAGAAGGATTCGGTG
GACAAGGCCCTCGACAAGGCTGTCGTGTCTACGATGCCCCAGACAGACCA
GGTGTGCGGACGTCGTTTATCTGGGGTGCCAGCGGATCAGGAGTGCATCG
GCTGGTACTTGCTTGCTTGGCGTACAGAGCGAAAAGTGTCACTCGCTTTG
GGAAGAGGGCAAAGGGGGGTATGGACTGCAGTTTCGCGTGCGTGACGTCG
TTTATCTGGGGTGCCAGCGGATCAGGAGTGCATCGGCTGGTACTTGCTTG
CTTGGCGTACAGAGCGAAAAGTGTCACTCGCTTTGGGAAGAGGGCAAAGG
GGGGTATGGACTGCAGTTTCGCGTGCGTCGATGCGCTACTCCCTGATGGC
CGGGGGCAAGCGCGTGCGGCCCATCCTCACCATCGCCGCCTGCGAGATGT
TCGGGGGCTCGATGGAGGCCGCCATGCCCACCGCCGTGAGCACGGAGATG
ATCCACACCATGTCTCTAATCCACGACGACCTTCCCGCAATGGATGACGA
CGACCTTCGCAGGCGTGTTTTTTTTTTGCGGGGGGGCGATGCGCTACTCC
CTGATGGCCGGGGGCAAGCGCGTGCGGCCCATCCTCACCATCGCCGCCTG
CGAGATGTTCGGGGGCTCGATGGAGGCCGCCATGCCCACCGCCGTGAGCA
CGGAGATGATCCACACCATGTCTCTAATCCACGACGACCTTCCCGCAATG
GATGACGACGACCTTCGCAGGCGTGTTTTTTTTTTGCGGGGGGGGGGAAT
GCCGACGTGCCACGTGAAGTACGGGGAGGACATCGCCATCCTCGCAGGCG
ACGCGCTCTTGTCCAAGTCTTTCGAGCACTGCGCCAAGGGGAATGCCGAC
GTGCCACGTGAAGTACGGGGAGGACATCGCCATCCTCGCAGGCGACGCGC
TCTTGTCCAAGTCTTTCGAGCACTGCGCCAAGTTGTTGCTGCTTTTGTTG
CGGTCGTCGTTGTTGTCGTTGGCTTTCGTTGTGTGGTTGTTGCTGCTTTT
GTTGCGGTCGTCGTTGTTGTCGTTGGCTTTCGTTGTGTGG
back to top