mRNA_Ecto-sp9_F_contig1181.1491.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1181.1491.1
Unique NamemRNA_Ecto-sp9_F_contig1181.1491.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig1181.1491.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTG5_ECTSI)

HSP 1 Score: 434 bits (1117), Expect = 6.660e-146
Identity = 225/263 (85.55%), Postives = 235/263 (89.35%), Query Frame = 1
Query:    1 QPVAPPRVRA*AILGYFYGSMGDMANYEEYLKLSGSFLIDSMQQGSTDMLPAGFAEIVSQKDTVQVYSGHLDAAGIESLGTLRQDAPQIKPAACEGDLYRYVAQSHAAFEQVVFERACQNSATRRHSKEDGPCEDNGGGAILHGNAPQAEEVSDAMVAALNNGLVDFEHLQETADRRPNIRTGVGGLLINITLAFQKAVNGDAGGALERFGHCVEVFERYLGLCRYRIL*PFVVRPWHFHLVLLPPTVPPELYSRLREVYDPS 789
            +PVA PRVRA AILGYF+GSMGDMANYEEYLKLSGSFLIDSMQQGSTDMLPAGFAEIVSQKDTVQVYSGHLDAAGIESLGTLRQDAPQIKPAACEGDLYRYVAQSHAAFEQVVFERACQNSATRRH KED PCEDNGGGAI HG+APQAEEVSD MVAAL NGL+DFEHLQETADR PNIRTGVGGLLINITLAFQKAVNGDA GAL+RFGHC+EVFERY GLCRYRIL   +       L  +  +    LYSRLREVY+PS
Sbjct:    6 KPVASPRVRAWAILGYFHGSMGDMANYEEYLKLSGSFLIDSMQQGSTDMLPAGFAEIVSQKDTVQVYSGHLDAAGIESLGTLRQDAPQIKPAACEGDLYRYVAQSHAAFEQVVFERACQNSATRRHPKEDEPCEDNGGGAIPHGSAPQAEEVSDTMVAALKNGLMDFEHLQETADR-PNIRTGVGGLLINITLAFQKAVNGDAAGALKRFGHCIEVFERYPGLCRYRILWCHLAHGILGSLAAIDDSRARGLYSRLREVYNPS 267          
BLAST of mRNA_Ecto-sp9_F_contig1181.1491.1 vs.
Match: Zn(2)-C6 (fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU17_ECTSI)

HSP 1 Score: 356 bits (913), Expect = 1.950e-114
Identity = 184/254 (72.44%), Postives = 203/254 (79.92%), Query Frame = 1
Query:   34 AILGYFYGSMGDMANYEEYLKLSGSFLIDSMQQGSTDMLPAGFAEIVSQKDTVQVYSGHLDAAGIESLGTLRQDAPQIKPAACEGDLYRYVAQSHAAFEQVVFERACQNSATRRHSKEDGPCEDNGGGAILHGNAPQAEEVSDAMVAALNNGLVDFEHLQETADRRPNIRTGVGGLLINITLAFQKAVNGDAGGALERFGHCVEVFERYLGLCRYRIL*PFVVRPWHFHLVLLPPTVPPELYSRLREVYDPSLP 795
            AILGYF+GS GDMA+Y EYLKLS SFL+DS++QGSTDMLPAGFAEIVSQKDTVQVYSGHLDAAGIES G  RQ APQIKPAAC+GD+YRYVAQS   F+QVVFERACQNSATRRH  ED PCEDN  GA  HGNAPQAEEVSDAMV  L +GL+DFEHL++T DR P IRTGVGGLLIN+TLAFQKA  GDAGG LER G CVEVFE Y G+CRY  L   +       L  +  +    LY+RLREVY+PS P
Sbjct:  245 AILGYFHGSTGDMADYVEYLKLSDSFLMDSVEQGSTDMLPAGFAEIVSQKDTVQVYSGHLDAAGIESFGAQRQHAPQIKPAACDGDIYRYVAQSQTRFQQVVFERACQNSATRRHLGEDEPCEDNRAGAFPHGNAPQAEEVSDAMVVGLKDGLIDFEHLEDTVDR-PYIRTGVGGLLINMTLAFQKAAKGDAGGTLERLGRCVEVFELYPGVCRYMTLWCHLAHSVLGALAAIDDSSSRGLYTRLREVYNPSRP 497          
BLAST of mRNA_Ecto-sp9_F_contig1181.1491.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIF1_9PHAE)

HSP 1 Score: 340 bits (873), Expect = 1.970e-110
Identity = 175/209 (83.73%), Postives = 181/209 (86.60%), Query Frame = 1
Query:   61 MGDMANYEEYLKLSGSFLIDSMQQGSTDMLPAGFAEIVSQKDTVQVYSGHLDAAGIESLGTLRQDAPQIKPAACEGDLYRYVAQSHAAFEQVVFERACQNSATRRHSKEDGPCEDNGGGAILHGNAPQAEEVSDAMVAALNNGLVDFEHLQETADRRPNIRTGVGGLLINITLAFQKAVNGDAGGALERFGHCVEVFERYLGLCRYRIL 687
            MGDMA++EEYLKLSGSFLIDSMQQGSTDMLPAGFAEIVSQKDTVQVYSG LDAAGIESLG LR DAPQIKPAACEGDLYRYVAQSHAAFEQVVFERACQNSATRRHSK    C+DNGGGA  HGNAPQAEEVS+ MVAAL NGL+DFEHLQETADR               TLAFQKAVNGDAGGALERFG CVEVFERY GLCRYR+L
Sbjct:    1 MGDMASHEEYLKLSGSFLIDSMQQGSTDMLPAGFAEIVSQKDTVQVYSGQLDAAGIESLGNLRHDAPQIKPAACEGDLYRYVAQSHAAFEQVVFERACQNSATRRHSKAGETCKDNGGGATPHGNAPQAEEVSETMVAALKNGLMDFEHLQETADR---------------TLAFQKAVNGDAGGALERFGRCVEVFERYPGLCRYRVL 194          
BLAST of mRNA_Ecto-sp9_F_contig1181.1491.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU23_ECTSI)

HSP 1 Score: 303 bits (777), Expect = 1.240e-94
Identity = 166/307 (54.07%), Postives = 198/307 (64.50%), Query Frame = 1
Query:   16 PRVRA*AILGYFYGSMGDMANYEEYLKLSGSFLIDSMQQGSTDMLPAGFAEIVSQKDTVQVYSGHLDAAGIESLGTLRQDAPQIKPAACEGDLYRYVAQSHAAFEQVVFERACQNSATRRHSKEDGPCEDNGGGAILHGNAPQAEEVSDAMVAALNNGLVDFEHLQETADRRPNIRTGVGGLLINITLAFQKAVNGDAGGALERFGHCVEVFERYLGLCRYRIL*PFVVRPWHFHLVLLPPTVPPELYSRLREVYDPSLPVFLSASATFGEVAWDSCILR*FPVQDIRGYYRESSVGCFLHPAPLRS 936
            P  RA AILGYFYG MGD   ++EYL L+ SFL DS+++GSTD+LPAGFAEIV  K TV+ YSG+LD A  +SL   RQ  P++ PAA EGDL+RY +QS  AFE++VFE+AC+ SA RRH   D PCE+    A  HGN PQ EEVSDAMV AL  GL+DFEHLQE  DR PNIR G+GGLLIN+ LAFQKA NGD GGALERFGHCVEVFERY G+CR  IL   +       L  +  +   ELY+RLR+VY+PS P     +    E    S     F  +   G     +   F  P    S
Sbjct:   22 PLKRAWAILGYFYGFMGDTGMFQEYLGLADSFLTDSIERGSTDILPAGFAEIVHHKQTVKAYSGNLDPAHDDSLAARRQHLPEVNPAANEGDLFRYFSQSQTAFEELVFEKACEKSAARRHLSADEPCEEGRCDANPHGNVPQVEEVSDAMVIALKAGLLDFEHLQEAVDR-PNIRKGIGGLLINVNLAFQKATNGDTGGALERFGHCVEVFERYPGVCRCMILWCRMSHSLLGALAAIDDSRARELYNRLRDVYNPSRPASFLPAPPLEEWRGTSAFCDDFQCRLFDGIIASQAFSVFSSPPDCTS 327          
BLAST of mRNA_Ecto-sp9_F_contig1181.1491.1 vs.
Match: Zn(2)-C6 (fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBJ1_9PHAE)

HSP 1 Score: 299 bits (766), Expect = 8.700e-91
Identity = 159/262 (60.69%), Postives = 188/262 (71.76%), Query Frame = 1
Query:    4 PVAPPRVRA*AILGYFYGSMGDMANYEEYLKLSGSFLIDSMQQGSTDMLPAGFAEIVSQKDTVQVYSGHLDAAGIESLGTLRQDAPQIKPAACEGDLYRYVAQSHAAFEQVVFERACQNSATRRHSKEDGPCEDNGGGAILHGNAPQAEEVSDAMVAALNNGLVDFEHLQETADRRPNIRTGVGGLLINITLAFQKAVNGDAGGALERFGHCVEVFERYLGLCRYRIL*PFVVRPWHFHLVLLPPTVPPELYSRLREVYDPS 789
            PV     +A AILGYFYG MGD   ++EYL LS SFL DS+++GSTD+LPAGFAEI+  K TV+VY+G+LDAA I+ LG  R+D PQ  PAA E D++RYV QSH AFEQ+VFE+ C+NSAT R   +D PCED+GG    HGN PQAEEVSDAMV  L +GL+DFEHLQE  DR  NIR G+GGLLIN+ LA QKA  GDAGGALER  HCVEVFERY G+CR  +L   V       L  +  +   ELY RLR VY+PS
Sbjct:  224 PVNAEVAKAWAILGYFYGFMGDTTTFQEYLGLSDSFLTDSIERGSTDILPAGFAEIIRHKQTVKVYAGNLDAAYIDFLGARRRDPPQANPAATELDVFRYVTQSHTAFEQLVFEKVCENSATIRPLSDDEPCEDDGGCGSPHGNPPQAEEVSDAMVTGLRDGLIDFEHLQEAVDRS-NIRQGIGGLLINMNLALQKAGKGDAGGALERLRHCVEVFERYPGVCRCMMLWCHVSHSILGALAAINDSRARELYDRLRNVYNPS 484          
BLAST of mRNA_Ecto-sp9_F_contig1181.1491.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU24_ECTSI)

HSP 1 Score: 296 bits (757), Expect = 4.610e-90
Identity = 159/270 (58.89%), Postives = 196/270 (72.59%), Query Frame = 1
Query:    4 PVAPPRVRA*AILGYFYGSMGDMANYEEYLKLSGSFLIDSMQQGSTDMLPAGFAEIVSQKDTVQVYSGHLDAAGIESLGTLRQDAPQIKPAACEGDLYRYVAQSHAAFEQVVFERACQNSATRRHSKEDGPCEDNGGGAILHGNAPQAEEVSDAMVAALNNGLVDFEHLQETADRRPNIRTGVGGLLINITLAFQKAVNGDAGGALERFGHCVEVFERYLGLCRYRIL*PFVVRPWHFHLVLLPPTVPPELYSRLREVYDPSLPV-FLSA 810
            PV      A AILGYFYG MGD A ++EYL L+ SFL DS+++GST++LPAGFAEI+  + TV+VY+GHLDAA I+ LG+ R D PQ+ PAA EGDL+RY +QS  AFE++VFE+AC+ S+ RRH  +D P E++ GG   HG APQAE+VSDAMV  L +GL+DFEHLQET DR  NIR G+GGLLIN+ LAFQKA  GDAGGALER GHCVE FERY G+CR  +L           L  +  +   ELY+RLR+VY+PS P  FL A
Sbjct:  151 PVNAEVAMAWAILGYFYGFMGDTATFQEYLGLADSFLTDSIERGSTNILPAGFAEIIRLEQTVKVYTGHLDAAYIDFLGSRRGDPPQVNPAANEGDLFRYFSQSLNAFEELVFEKACEKSSIRRHLSDDEPWEEDRGGGSPHGAAPQAEDVSDAMVMGLQDGLIDFEHLQETVDRS-NIRKGIGGLLINMYLAFQKAGKGDAGGALERLGHCVEAFERYPGVCRCMMLWCHASHSILGALAAIKSSRARELYNRLRDVYNPSRPASFLPA 419          
BLAST of mRNA_Ecto-sp9_F_contig1181.1491.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU28_ECTSI)

HSP 1 Score: 290 bits (742), Expect = 1.400e-88
Identity = 155/264 (58.71%), Postives = 189/264 (71.59%), Query Frame = 1
Query:    4 PVAPPRVRA*AILGYFYGSMGDMANYEEYLKLSGSFLIDSMQQGSTDMLPAGFAEIVSQKDTVQVYSGHLDAAGIESLGTLRQDAPQIKPAACEGDLYRYVAQSHAAFEQVVFERACQNSATRRHSKEDGPCEDNGGGAILHGNAPQAEEVSDAMVAALNNGLVDFEHLQETADRRPNIRTGVGGLLINITLAFQKAVNGDAGGALERFGHCVEVFERYLGLCRYRIL*PFVVRPWHFHLVLLPPTVPPELYSRLREVYDPSLP 795
            PV     +A AILGY Y  MGD   YEEYLKLS SFLIDS++QGSTDMLPAGFAE+V  K+T + YSG++DA    SLG   Q   QI PAA EGD++RYVAQS  AFEQVVFE++C+NSA RRHS +D  C++  GGA   G+ PQ EEVSDAMVA   +GL++FE+LQ+T DR PN+ TG+ GLLIN+TLA+QKA NGDAGGALERFG CV+VFERY G+CR       +       L  +  +    LY+RLR+VY+PS P
Sbjct:   92 PVNAEVAKAWAILGYLYSYMGDTEKYEEYLKLSASFLIDSIEQGSTDMLPAGFAEMVHHKETAKAYSGNVDATDNGSLGAHHQHPLQINPAASEGDVFRYVAQSLIAFEQVVFEKSCENSAARRHSSDDKLCDETTGGATPLGHTPQVEEVSDAMVAGFKDGLIEFEYLQDTVDR-PNVGTGIVGLLINMTLAYQKAANGDAGGALERFGQCVDVFERYPGVCRCMFW-CHIAHGILGSLAAIDDSRAGGLYNRLRDVYNPSRP 353          
BLAST of mRNA_Ecto-sp9_F_contig1181.1491.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU19_ECTSI)

HSP 1 Score: 287 bits (735), Expect = 4.340e-88
Identity = 165/266 (62.03%), Postives = 183/266 (68.80%), Query Frame = 1
Query:    4 PVAPPRVRA*AILGYFYGSMGDMANYEEYLKLSGSFLIDSMQQGSTDMLPAGFAEIVSQKDTVQVYSGHLDAAGIESLGTLRQDAPQIKPAACEGDLYRYVAQSHAAFEQVVFERACQNSATRRHSKEDGPCEDNGGGAILHGNAPQAEEVSDAMVAALNNGLVDFEHLQETADRRPNIRTGVGGLLINITLAFQKAVNGDAGGALERFGHCVEVFERYLGLCRYRIL*PFVVRPWHFHLVLLPPTVPPELYSRLREVYDPSLPVF 801
            PV     +A AILGYF+GSMGDMANY EYLKLSGSFL+DS++QGSTDMLPAGFAEI+ QKD VQVYSGHLDA GIESL   RQDAPQIKPAACEGDLYRYVAQS  AFEQ VFERAC+N+ATRR S+E+  CEDN  GAI H NAPQAEEVS  MVAAL +GL+DFEHLQE ADR PNIRTG+GGLLIN+    Q  +     GAL           R  GL                             Y+RLREVY+PS P +
Sbjct:  132 PVNAEVAKAWAILGYFHGSMGDMANYVEYLKLSGSFLMDSIEQGSTDMLPAGFAEIIRQKDNVQVYSGHLDATGIESLVAQRQDAPQIKPAACEGDLYRYVAQSLTAFEQDVFERACENTATRRQSRENEACEDNRSGAIPHDNAPQAEEVSAIMVAALKDGLIDFEHLQEIADR-PNIRTGIGGLLINMCHLAQCVL-----GALAAIDD-----SRARGL-----------------------------YARLREVYNPSRPSY 357          
BLAST of mRNA_Ecto-sp9_F_contig1181.1491.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU25_ECTSI)

HSP 1 Score: 258 bits (659), Expect = 1.210e-75
Identity = 140/255 (54.90%), Postives = 174/255 (68.24%), Query Frame = 1
Query:    4 PVAPPRVRA*AILGYFYGSMGDMANYEEYLKLSGSFLIDSMQQGSTDMLPAGFAEIVSQKDTVQVYSGHLDAAGIESLGTLRQDAPQIKPAACEGDLYRYVAQSHAAFEQVVFERACQNSATRRHSKEDGPCEDNGGGAILHGNAPQAEEVSDAMVAALNNGLVDFEHLQETADRRPNIRTGVGGLLINITLAFQKAVNGDAGGALERFGHCVEVFERYLGLCRYRIL*PFVVRPWHFHLVLLPPTVPPELYSRL 768
            PV     +A AI GYFYG MGD A ++EYL L+ SFL DS+++GSTD+LPAGFAEI+  K TV+VY+G+LDAA I+ LG+ R++ PQ+ PAA EGDLYRY  Q+ AAFE++VFE+A                 ++ GG   HG  PQAE+VSDAMV AL +GL+DF HLQET DR PNIR G+GGLL+N+ LAF KA NGD GGA ER  HCVEVFERY G+CR  +L   V       L  +  +   ELY+RL
Sbjct:  151 PVNAEVAKAWAISGYFYGFMGDTATFQEYLGLADSFLTDSIERGSTDILPAGFAEIIRLKQTVKVYAGNLDAAYIDFLGSRRREPPQVNPAANEGDLYRYFCQASAAFEELVFEKAXXXXXXXXXXXXXXXXXEDRGGGSSHGADPQAEDVSDAMVTALKDGLIDFGHLQETVDR-PNIRKGIGGLLMNMALAFLKATNGDTGGAFERLEHCVEVFERYPGVCRCMMLWCHVSHSILAALAAIKSSRARELYNRL 404          
BLAST of mRNA_Ecto-sp9_F_contig1181.1491.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6K6_ECTSI)

HSP 1 Score: 245 bits (625), Expect = 1.340e-75
Identity = 132/219 (60.27%), Postives = 154/219 (70.32%), Query Frame = 1
Query:   25 RA*AILGYFYGSMGDMANYEEYLKLSGSFLIDSMQQGSTDMLPAGFAEIVSQKDTVQVYSGHLDAAGIESL--GTLRQDAPQIKPAACEGDLYRYVAQSHAAFEQVVFERACQNSATRRHSKEDGPCEDNGGGAILHGNAPQAEEVSDAMVAALNNGLVDFEHLQETADRRPNIRTGVGGLLINITLAFQKAVNGDAGGALERFGHCVEVFERYLGLCR 675
            RA AILGY  G MG+ A YEEY+KLS SFL  ++QQGSTDMLP+GFAE++ Q + VQ YSG +D   I+SL  G  RQ  PQI PAACEGD+YRYV QS  AF Q+  ERAC+++   R S +D PCE++ G    HGNAPQAEEVS AMVA L + L+ FEHLQE ADR               TLAFQKA NGDAGGA+ERFG+CVEVFE Y GLCR
Sbjct:    5 RASAILGYLLGFMGETAKYEEYMKLSASFLATAIQQGSTDMLPSGFAEMIDQTN-VQAYSGDVDTPDIQSLAAGHQRQPRPQINPAACEGDMYRYVTQSIIAFTQLALERACEDTVMIRPSSDDEPCEEDRGDIKPHGNAPQAEEVSGAMVAGLKDNLIAFEHLQEAADR---------------TLAFQKAANGDAGGAMERFGYCVEVFELYPGLCR 207          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1181.1491.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized6.660e-14685.55protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Zn(2)-C61.950e-11472.44fungal-type domain-containing protein n=1 Tax=Ecto... [more]
Uncharacterized1.970e-11083.73protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.240e-9454.07protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Zn(2)-C68.700e-9160.69fungal-type domain-containing protein n=1 Tax=Ecto... [more]
Uncharacterized4.610e-9058.89protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.400e-8858.71protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized4.340e-8862.03protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.210e-7554.90protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.340e-7560.27protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1181contigEcto-sp9_F_contig1181:6108..10866 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-21_001280.2
Exons8
Model size1420
Cds size630
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1181.1491.1prot_Ecto-sp9_F_contig1181.1491.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1181 6168..9007 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928439.4347932-UTR-Ecto-sp9_F_contig1181:6107..61671622928439.4347932-UTR-Ecto-sp9_F_contig1181:6107..6167Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1181 6108..6167 +
1692277871.9748354-UTR-Ecto-sp9_F_contig1181:6107..61671692277871.9748354-UTR-Ecto-sp9_F_contig1181:6107..6167Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1181 6108..6167 +
1622928439.571204-UTR-Ecto-sp9_F_contig1181:9007..91871622928439.571204-UTR-Ecto-sp9_F_contig1181:9007..9187Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1181 9008..9187 +
1692277872.0535147-UTR-Ecto-sp9_F_contig1181:9007..91871692277872.0535147-UTR-Ecto-sp9_F_contig1181:9007..9187Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1181 9008..9187 +
1622928439.5813642-UTR-Ecto-sp9_F_contig1181:10316..108661622928439.5813642-UTR-Ecto-sp9_F_contig1181:10316..10866Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1181 10317..10866 +
1692277872.0611193-UTR-Ecto-sp9_F_contig1181:10316..108661692277872.0611193-UTR-Ecto-sp9_F_contig1181:10316..10866Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1181 10317..10866 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928439.4761615-CDS-Ecto-sp9_F_contig1181:6167..61791622928439.4761615-CDS-Ecto-sp9_F_contig1181:6167..6179Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1181 6168..6179 +
1692277871.9843845-CDS-Ecto-sp9_F_contig1181:6167..61791692277871.9843845-CDS-Ecto-sp9_F_contig1181:6167..6179Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1181 6168..6179 +
1622928439.4881554-CDS-Ecto-sp9_F_contig1181:6413..64971622928439.4881554-CDS-Ecto-sp9_F_contig1181:6413..6497Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1181 6414..6497 +
1692277871.9939096-CDS-Ecto-sp9_F_contig1181:6413..64971692277871.9939096-CDS-Ecto-sp9_F_contig1181:6413..6497Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1181 6414..6497 +
1622928439.4987218-CDS-Ecto-sp9_F_contig1181:7143..72511622928439.4987218-CDS-Ecto-sp9_F_contig1181:7143..7251Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1181 7144..7251 +
1692277872.0046818-CDS-Ecto-sp9_F_contig1181:7143..72511692277872.0046818-CDS-Ecto-sp9_F_contig1181:7143..7251Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1181 7144..7251 +
1622928439.5142646-CDS-Ecto-sp9_F_contig1181:7913..81761622928439.5142646-CDS-Ecto-sp9_F_contig1181:7913..8176Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1181 7914..8176 +
1692277872.0142536-CDS-Ecto-sp9_F_contig1181:7913..81761692277872.0142536-CDS-Ecto-sp9_F_contig1181:7913..8176Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1181 7914..8176 +
1622928439.529569-CDS-Ecto-sp9_F_contig1181:8387..84321622928439.529569-CDS-Ecto-sp9_F_contig1181:8387..8432Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1181 8388..8432 +
1692277872.0233593-CDS-Ecto-sp9_F_contig1181:8387..84321692277872.0233593-CDS-Ecto-sp9_F_contig1181:8387..8432Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1181 8388..8432 +
1622928439.5421963-CDS-Ecto-sp9_F_contig1181:8645..87621622928439.5421963-CDS-Ecto-sp9_F_contig1181:8645..8762Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1181 8646..8762 +
1692277872.0324912-CDS-Ecto-sp9_F_contig1181:8645..87621692277872.0324912-CDS-Ecto-sp9_F_contig1181:8645..8762Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1181 8646..8762 +
1622928439.5573967-CDS-Ecto-sp9_F_contig1181:9006..90071622928439.5573967-CDS-Ecto-sp9_F_contig1181:9006..9007Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1181 9007..9007 +
1692277872.0423427-CDS-Ecto-sp9_F_contig1181:9006..90071692277872.0423427-CDS-Ecto-sp9_F_contig1181:9006..9007Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1181 9007..9007 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1181.1491.1

>prot_Ecto-sp9_F_contig1181.1491.1 ID=prot_Ecto-sp9_F_contig1181.1491.1|Name=mRNA_Ecto-sp9_F_contig1181.1491.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=210bp
MGDMANYEEYLKLSGSFLIDSMQQGSTDMLPAGFAEIVSQKDTVQVYSGH
LDAAGIESLGTLRQDAPQIKPAACEGDLYRYVAQSHAAFEQVVFERACQN
SATRRHSKEDGPCEDNGGGAILHGNAPQAEEVSDAMVAALNNGLVDFEHL
QETADRRPNIRTGVGGLLINITLAFQKAVNGDAGGALERFGHCVEVFERY
LGLCRYRIL*
back to top

mRNA from alignment at Ecto-sp9_F_contig1181:6108..10866+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1181.1491.1 ID=mRNA_Ecto-sp9_F_contig1181.1491.1|Name=mRNA_Ecto-sp9_F_contig1181.1491.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=4759bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1181:6108..10866+ (Ectocarpus species9 EcSCA_722f female)
CAACCCGTCGCCCCTCCCCGCGTCAGAGCGTAGGCGATCCTGGGATACTT CTACGGGTCCATGGGAGACATGGTGAGCTAGACTTCGGTGGGAGGTACGG CACCCTTGGTAGTTGTGCCCGCGTCGACCACAGGAGGAGAATGCCTTCTT GCCCGTCGAAAGAGCCGATCGCGTAGCCACCGCATGATTCCCATAGTCGA CGACGCTTACAATATATTGGAAATGGTCTGCTCCCACTGGACGCTATCAT GTGACCCACCCACGTATTTATGTTGGCGCCATGTACGTTGTGCTCCTGTG CTTCAGGCGAATTATGAGGAGTACCTGAAGCTTTCAGGCTCCTTCTTGAT TGATTCCATGCAGCAAGGGTCAACTGACATGCTGCCAGCGGTGAGTGTGA CGTCATTGCATTTTGTTGGACTGTAGCAAAGCCTAGAGATCCTTTCCTGC CGTGCTTTTCAAGTTGGCCAGAGGTTGAGGTCGACGAAAGTGTGGCTGTT TACAACAGGAGCATTGTTGCATGGACAGCAATAGACTGGCAGCATGGCCG GCTTCCCAAAAAGGAGATTCAGATCATTGCCGCCCTTCGCCCGAAGAGCA CTTTCCTCTATGAGCTAAGCCACCGACGCAAACATCGTGTTGGATGTGTG CAAGGCCATCACGGGAGAAATCATCCTGGCAACTCGTCTGAGAAACTACC GTAGTATTCACGGAGTGCGTTGATGCGCTTGGTAGCCGCAGCATCGCATT TGCTCAGAGGTTGTTATCCTGATCACGGTACTACAGTAGCGTCTTGCTCC TCTTACTTCATGCCACTCGGCCGTCCCACGTTGGCACCATGTTGTTCATT GACGAATGACGCAGCGATGAGGTCTGGTGTAGTCTGACCAATCACTCCCG GAGTACTGCCTTGATGTGAAGTGCGGCAGGCATGTTTTTGTGCTGTTTAC TTCAGGTCATGCTTCACTGTTGTGGTTTAGTGTTGCGGTCTTGCGGATCT GCTGAACTCTCGTACGCATGCATGTACCTTGGCCAGGGATTCGCTGAGAT CGTCAGTCAGAAGGACACTGTCCAGGTGTACTCTGGACATCTAGACGCTG CGGGTATCGAGTCGTTGGGCACCCTTCGTCAAGACGCTCCGCAGGTGTGT CCTGTACTTCGTAGCTGAGGCTGATTGGCTTATGGTGTCTTCGTAAAATT GCGCACACAGTACTTGTGGCTGCAACAGCGATGTGGGATGCCGCTACTCA ATTCTCGCAGCATTCCTTGTCTGCCACGGCAATAAGGTGTGTGAGGTTGG GCAGTCGGCAACAGACATGAGCACGGTACTCTTAAGTGATCACATGCGCT CGCCCACACCAGCGAAGACATTGAGCAACAGAACATTGAAAAAAGAAGAA AGAAGAAGCTCGTCATCCCACAATGAGCGATAAGTGCTTCGATTTTCAGG AGTTTTTCTGCACTGACCTATAATTCGACGTTAAGGAGTTCTTTTTTTCT CAATTTTCGGCGAACTTGAAGGGGATCTGAGTTTGCATGATCGAATTCTT CGTGAACTAGGGTTGGGAGGGTGCCGAAGATGACGTACGGGTAAACGGGC AGAAAAATGTTGATGTGAAGACAACAAGAGCAGCAACAAGATACCGAAGC AGCAATGATTGCTGCCGGTACCCAATTTGACGTCTCGTGCGACTTCGTGG GAACCTGAAGGCGGCAGGGAGTCGAGAGTGGTAGTGTTGTACTATGTATT GTGCACGACTACGAGATCTGCACCTTCACCCTCTTCCGCTGCTACTTGTC ACCCAGATCAAGCCAGCTGCATGCGAAGGGGACTTATATCGGTATGTTGC CCAGTCACATGCGGCGTTCGAGCAAGTTGTCTTCGAGAGAGCTTGCCAGA ACAGTGCGACGCGCAGACATTCGAAAGAAGACGGTCCTTGCGAAGACAAC GGAGGCGGTGCTATTCTGCACGGCAACGCCCCCCAAGCGGAAGAGGTGTC TGATGCTATGGTGGCTGCCCTAAATAATGGCCTCGTGGACTTCGAACACC TACAAGAAACAGCCGATCGGTGAGCAAATTGCAACCCTGCTTGACGGGTT GCTTTCAAATGCCATGCGGCATCTCAATATCCATAATGCCATCGAACCTT TGTTTCTGCACCTCCTCTGTTGGTCGACCCCTGTTTCCGCACGTTTTGGT ATCAGCGCAGGGTTCTAGCACCCTTTCACGCACCCCTCGTTCCTTTTCTC CCCGTGGCCGGCGTTCACCGACATGGCGAGCAGACCAAACATTCGCACGG GCGTCGGCGGTCTCCTCATCAACATGTATGTAACCCTGACAGCATCGTCC TGACTGCTAGAAACAGCAAGATTTTCTGTGTTCTTTTCCTACGATGGCTC ACGCTGGGTTGACCTACGAGCGCTACAACCTGTGTTTACTGCCATGCGAA CAACTCTGGGTAGTAGAGAATTTGTACTACTGTCATATACGGCGACGACT CGCTCCATATCTACAATGCCACGTGCCGTGTTTGACAGAACCCTGGCATT TCAGAAAGCAGTAAATGGGGATGCTGGTGGGGCGCTGGAGAGGTTCGGGC ATTGCGTCGAGGTATTCGAGCGGTACCTTGGCTTGTGCCGGTACAGGATA CTATGGTGAGCCAAAATCAATCGCATTGACATCACCATAACTGACATTGA TAGTCTCGATGGCTGCGATCCATGACCGTGGCGAGCTATGGGACAAGCTG CGCCTTGAGTCTAGAGGACAAGAAGAGTTCTACTAGTGCCAGTTTTGTAG TTCAATATTCTGCGGAGGAGCTCGGCCACTAATAGTGTGGGACTACCCAT AGACAGTTCTGGCATTCGTGGTAAAGGCATGTCAACGGTGTGTACGGAGA CCGTTTGTGGTACGACCTTGGCATTTTCATCTTGTGCTACTGCCCCCCAC GGTGCCTCCGGAACTGTATTCTCGGTTGCGGGAGGTCTACGATCCGTCCC TGCCTGTCTTCCTCTCTGCCAGCGCCACCTTCGGAGAAGTGGCGTGGGAT AGCTGCATTCTGCGATGATTTCCTGTGCAGGTGCGTGCGGGGAATGATTC CCCGCTATGACACAAGCACTGGGGTTTGTCCAACCTGCTGTCAACACCAA GGCAAGCTACTGTGCGGAAAAGCCGTGTCTGTCGAATTTCTCAAGAACAA AGCTTGACAAACTGTCTTGCCTACAGGCGCAACACTAATCGTTGGCCTTG TTTCGGCGTGAATGATTGCCTCTTCGTCATTTCACAACCGAAAAACCATT GTTATTTGAAGTGCTCTTTTCCTTCAATGGCACGGATTTCCGAGGGCTCC AACCGCTTCACAGCGTGACTTTCTCTTCGTTTCATTTTCTAAATATGAAT TATCGATTGAGATGGCAATCGCTGGGTCGGGAGGGTCGTTTTGATTCGTT CTTGTCGGGACAGCCCGTACGAATTTCAATAGAAATCGGTAACCGGTTCC TTTAGTCAGGCTCTTGGTACGAGTTCGTTGTGTTTTTTGGCGACCACGAG TTTCGACGCATATTTGTCCTTCTGGTTAACCGCCGAAGAACAATCCTGTG GACGTATCATATGCTCTTGCTCGTTGGCTATTATCTCGGAAAGCGCACAC ACGTACCTACTAGGTGCCTTCGTGGGCACGGAAGCCTCGGGAAGGGGTCC AACGAAGGAAATACCTGCATAGGTGATAAGTGAATGAATGTTTTGTGAAC CTCGTGTAACATGTGAAATCTCAAGAGATGTATTACATACAAAGTTGTTG TTGCAACAACGTTTTAAGTCTTTCGTTCGAAGGAATCAACCCCCTTCTTT ATCCCAGAGTGAGGTACAAACGAAACCGATATATGAACACGGGAAGAGAT CCCTGCATTTCCCCATGAGACCATGAAAGAAAAGACACGCAGAGCAGGGC AAGAGACCCCGTCCAAAAAAGCGAACGGCACACAGTCCATCGGTCCACTC GAGAGCTGGACCACTAATGACTGTAGCAGCCTCTCTTTCCGCGTGGATGT GCTTTCGCTCAAAAGCGGCGAATATTGGCTCGAGGGTCAGCCGACAACTT TGTTGGTGTGGCCCTCCGTGTCCAAACCAACCCGTTCCACGACTGTGGAC ATAGGACTGAACCCTCGCCCCTGCTGCCTCCCTCCGGTTCGTCAATGCAT TCTTTGCAGGATATTCGAGGGTATTATCGCGAGTCAAGCGTTGGGTGTTT TCTCCACCCCGCCCCTCTGCGCTCGCAACAGCACCGGCTCACAAGGCACG GAAGAGCATCTGCAGGCTGTTGAATACGAGCACCGTAGCAGCATCGGGTC GGCGGGTGTCACTCCCGAGAATGCTACCGGCTCGATCGTGGTTGCCTCTT TCAGCAACGCAGACAAACCAATGGCATGTACTAGCTCGTGGGAATCGTAC CAAGAGCCTGCGCCACAAATGCGTCTACCGGTCGGACCGAGCGTGTCTCC TTTGCATCCCCACTTCGCATCGGTCGCGGGAGGCACAAGTGATGATACTG ACGTGTTGAGTGGTGCGGTCGAGGGATGTGGCAGTGGTGGTGTCATTGCT GGCTCGGTGCCCCACGTGCCCGATATGCCCTTGACATCGCCGGGGATGAG AGAGGTGGACGGGACCGCGCCCGGGGATGATGCTCTTACCGCATCAGACT GGCTGGATATTTCTCAGGCCATGATGGATGCAGGTGACGACAAGGATGCG GCGCGTCGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1181:6108..10866+

>mRNA_Ecto-sp9_F_contig1181.1491.1 ID=mRNA_Ecto-sp9_F_contig1181.1491.1|Name=mRNA_Ecto-sp9_F_contig1181.1491.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1260bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1181:6108..10866+ (Ectocarpus species9 EcSCA_722f female)
ATGGGAGACATGATGGGAGACATGGCGAATTATGAGGAGTACCTGAAGCT
TTCAGGCTCCTTCTTGATTGATTCCATGCAGCAAGGGTCAACTGACATGC
TGCCAGCGGCGAATTATGAGGAGTACCTGAAGCTTTCAGGCTCCTTCTTG
ATTGATTCCATGCAGCAAGGGTCAACTGACATGCTGCCAGCGGGATTCGC
TGAGATCGTCAGTCAGAAGGACACTGTCCAGGTGTACTCTGGACATCTAG
ACGCTGCGGGTATCGAGTCGTTGGGCACCCTTCGTCAAGACGCTCCGCAG
GGATTCGCTGAGATCGTCAGTCAGAAGGACACTGTCCAGGTGTACTCTGG
ACATCTAGACGCTGCGGGTATCGAGTCGTTGGGCACCCTTCGTCAAGACG
CTCCGCAGATCAAGCCAGCTGCATGCGAAGGGGACTTATATCGGTATGTT
GCCCAGTCACATGCGGCGTTCGAGCAAGTTGTCTTCGAGAGAGCTTGCCA
GAACAGTGCGACGCGCAGACATTCGAAAGAAGACGGTCCTTGCGAAGACA
ACGGAGGCGGTGCTATTCTGCACGGCAACGCCCCCCAAGCGGAAGAGGTG
TCTGATGCTATGGTGGCTGCCCTAAATAATGGCCTCGTGGACTTCGAACA
CCTACAAGAAACAGCCGATCGATCAAGCCAGCTGCATGCGAAGGGGACTT
ATATCGGTATGTTGCCCAGTCACATGCGGCGTTCGAGCAAGTTGTCTTCG
AGAGAGCTTGCCAGAACAGTGCGACGCGCAGACATTCGAAAGAAGACGGT
CCTTGCGAAGACAACGGAGGCGGTGCTATTCTGCACGGCAACGCCCCCCA
AGCGGAAGAGGTGTCTGATGCTATGGTGGCTGCCCTAAATAATGGCCTCG
TGGACTTCGAACACCTACAAGAAACAGCCGATCGCAGACCAAACATTCGC
ACGGGCGTCGGCGGTCTCCTCATCAACATCAGACCAAACATTCGCACGGG
CGTCGGCGGTCTCCTCATCAACATAACCCTGGCATTTCAGAAAGCAGTAA
ATGGGGATGCTGGTGGGGCGCTGGAGAGGTTCGGGCATTGCGTCGAGGTA
TTCGAGCGGTACCTTGGCTTGTGCCGGTACAGGATACTATGAACCCTGGC
ATTTCAGAAAGCAGTAAATGGGGATGCTGGTGGGGCGCTGGAGAGGTTCG
GGCATTGCGTCGAGGTATTCGAGCGGTACCTTGGCTTGTGCCGGTACAGG
ATACTATGAA
back to top