mRNA_Ecto-sp9_F_contig1181.1491.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig1181.1491.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTG5_ECTSI) HSP 1 Score: 434 bits (1117), Expect = 6.660e-146 Identity = 225/263 (85.55%), Postives = 235/263 (89.35%), Query Frame = 1
Query: 1 QPVAPPRVRA*AILGYFYGSMGDMANYEEYLKLSGSFLIDSMQQGSTDMLPAGFAEIVSQKDTVQVYSGHLDAAGIESLGTLRQDAPQIKPAACEGDLYRYVAQSHAAFEQVVFERACQNSATRRHSKEDGPCEDNGGGAILHGNAPQAEEVSDAMVAALNNGLVDFEHLQETADRRPNIRTGVGGLLINITLAFQKAVNGDAGGALERFGHCVEVFERYLGLCRYRIL*PFVVRPWHFHLVLLPPTVPPELYSRLREVYDPS 789
+PVA PRVRA AILGYF+GSMGDMANYEEYLKLSGSFLIDSMQQGSTDMLPAGFAEIVSQKDTVQVYSGHLDAAGIESLGTLRQDAPQIKPAACEGDLYRYVAQSHAAFEQVVFERACQNSATRRH KED PCEDNGGGAI HG+APQAEEVSD MVAAL NGL+DFEHLQETADR PNIRTGVGGLLINITLAFQKAVNGDA GAL+RFGHC+EVFERY GLCRYRIL + L + + LYSRLREVY+PS
Sbjct: 6 KPVASPRVRAWAILGYFHGSMGDMANYEEYLKLSGSFLIDSMQQGSTDMLPAGFAEIVSQKDTVQVYSGHLDAAGIESLGTLRQDAPQIKPAACEGDLYRYVAQSHAAFEQVVFERACQNSATRRHPKEDEPCEDNGGGAIPHGSAPQAEEVSDTMVAALKNGLMDFEHLQETADR-PNIRTGVGGLLINITLAFQKAVNGDAAGALKRFGHCIEVFERYPGLCRYRILWCHLAHGILGSLAAIDDSRARGLYSRLREVYNPS 267
BLAST of mRNA_Ecto-sp9_F_contig1181.1491.1 vs.
Match: Zn(2)-C6 (fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU17_ECTSI) HSP 1 Score: 356 bits (913), Expect = 1.950e-114 Identity = 184/254 (72.44%), Postives = 203/254 (79.92%), Query Frame = 1
Query: 34 AILGYFYGSMGDMANYEEYLKLSGSFLIDSMQQGSTDMLPAGFAEIVSQKDTVQVYSGHLDAAGIESLGTLRQDAPQIKPAACEGDLYRYVAQSHAAFEQVVFERACQNSATRRHSKEDGPCEDNGGGAILHGNAPQAEEVSDAMVAALNNGLVDFEHLQETADRRPNIRTGVGGLLINITLAFQKAVNGDAGGALERFGHCVEVFERYLGLCRYRIL*PFVVRPWHFHLVLLPPTVPPELYSRLREVYDPSLP 795
AILGYF+GS GDMA+Y EYLKLS SFL+DS++QGSTDMLPAGFAEIVSQKDTVQVYSGHLDAAGIES G RQ APQIKPAAC+GD+YRYVAQS F+QVVFERACQNSATRRH ED PCEDN GA HGNAPQAEEVSDAMV L +GL+DFEHL++T DR P IRTGVGGLLIN+TLAFQKA GDAGG LER G CVEVFE Y G+CRY L + L + + LY+RLREVY+PS P
Sbjct: 245 AILGYFHGSTGDMADYVEYLKLSDSFLMDSVEQGSTDMLPAGFAEIVSQKDTVQVYSGHLDAAGIESFGAQRQHAPQIKPAACDGDIYRYVAQSQTRFQQVVFERACQNSATRRHLGEDEPCEDNRAGAFPHGNAPQAEEVSDAMVVGLKDGLIDFEHLEDTVDR-PYIRTGVGGLLINMTLAFQKAAKGDAGGTLERLGRCVEVFELYPGVCRYMTLWCHLAHSVLGALAAIDDSSSRGLYTRLREVYNPSRP 497
BLAST of mRNA_Ecto-sp9_F_contig1181.1491.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIF1_9PHAE) HSP 1 Score: 340 bits (873), Expect = 1.970e-110 Identity = 175/209 (83.73%), Postives = 181/209 (86.60%), Query Frame = 1
Query: 61 MGDMANYEEYLKLSGSFLIDSMQQGSTDMLPAGFAEIVSQKDTVQVYSGHLDAAGIESLGTLRQDAPQIKPAACEGDLYRYVAQSHAAFEQVVFERACQNSATRRHSKEDGPCEDNGGGAILHGNAPQAEEVSDAMVAALNNGLVDFEHLQETADRRPNIRTGVGGLLINITLAFQKAVNGDAGGALERFGHCVEVFERYLGLCRYRIL 687
MGDMA++EEYLKLSGSFLIDSMQQGSTDMLPAGFAEIVSQKDTVQVYSG LDAAGIESLG LR DAPQIKPAACEGDLYRYVAQSHAAFEQVVFERACQNSATRRHSK C+DNGGGA HGNAPQAEEVS+ MVAAL NGL+DFEHLQETADR TLAFQKAVNGDAGGALERFG CVEVFERY GLCRYR+L
Sbjct: 1 MGDMASHEEYLKLSGSFLIDSMQQGSTDMLPAGFAEIVSQKDTVQVYSGQLDAAGIESLGNLRHDAPQIKPAACEGDLYRYVAQSHAAFEQVVFERACQNSATRRHSKAGETCKDNGGGATPHGNAPQAEEVSETMVAALKNGLMDFEHLQETADR---------------TLAFQKAVNGDAGGALERFGRCVEVFERYPGLCRYRVL 194
BLAST of mRNA_Ecto-sp9_F_contig1181.1491.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU23_ECTSI) HSP 1 Score: 303 bits (777), Expect = 1.240e-94 Identity = 166/307 (54.07%), Postives = 198/307 (64.50%), Query Frame = 1
Query: 16 PRVRA*AILGYFYGSMGDMANYEEYLKLSGSFLIDSMQQGSTDMLPAGFAEIVSQKDTVQVYSGHLDAAGIESLGTLRQDAPQIKPAACEGDLYRYVAQSHAAFEQVVFERACQNSATRRHSKEDGPCEDNGGGAILHGNAPQAEEVSDAMVAALNNGLVDFEHLQETADRRPNIRTGVGGLLINITLAFQKAVNGDAGGALERFGHCVEVFERYLGLCRYRIL*PFVVRPWHFHLVLLPPTVPPELYSRLREVYDPSLPVFLSASATFGEVAWDSCILR*FPVQDIRGYYRESSVGCFLHPAPLRS 936
P RA AILGYFYG MGD ++EYL L+ SFL DS+++GSTD+LPAGFAEIV K TV+ YSG+LD A +SL RQ P++ PAA EGDL+RY +QS AFE++VFE+AC+ SA RRH D PCE+ A HGN PQ EEVSDAMV AL GL+DFEHLQE DR PNIR G+GGLLIN+ LAFQKA NGD GGALERFGHCVEVFERY G+CR IL + L + + ELY+RLR+VY+PS P + E S F + G + F P S
Sbjct: 22 PLKRAWAILGYFYGFMGDTGMFQEYLGLADSFLTDSIERGSTDILPAGFAEIVHHKQTVKAYSGNLDPAHDDSLAARRQHLPEVNPAANEGDLFRYFSQSQTAFEELVFEKACEKSAARRHLSADEPCEEGRCDANPHGNVPQVEEVSDAMVIALKAGLLDFEHLQEAVDR-PNIRKGIGGLLINVNLAFQKATNGDTGGALERFGHCVEVFERYPGVCRCMILWCRMSHSLLGALAAIDDSRARELYNRLRDVYNPSRPASFLPAPPLEEWRGTSAFCDDFQCRLFDGIIASQAFSVFSSPPDCTS 327
BLAST of mRNA_Ecto-sp9_F_contig1181.1491.1 vs.
Match: Zn(2)-C6 (fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBJ1_9PHAE) HSP 1 Score: 299 bits (766), Expect = 8.700e-91 Identity = 159/262 (60.69%), Postives = 188/262 (71.76%), Query Frame = 1
Query: 4 PVAPPRVRA*AILGYFYGSMGDMANYEEYLKLSGSFLIDSMQQGSTDMLPAGFAEIVSQKDTVQVYSGHLDAAGIESLGTLRQDAPQIKPAACEGDLYRYVAQSHAAFEQVVFERACQNSATRRHSKEDGPCEDNGGGAILHGNAPQAEEVSDAMVAALNNGLVDFEHLQETADRRPNIRTGVGGLLINITLAFQKAVNGDAGGALERFGHCVEVFERYLGLCRYRIL*PFVVRPWHFHLVLLPPTVPPELYSRLREVYDPS 789
PV +A AILGYFYG MGD ++EYL LS SFL DS+++GSTD+LPAGFAEI+ K TV+VY+G+LDAA I+ LG R+D PQ PAA E D++RYV QSH AFEQ+VFE+ C+NSAT R +D PCED+GG HGN PQAEEVSDAMV L +GL+DFEHLQE DR NIR G+GGLLIN+ LA QKA GDAGGALER HCVEVFERY G+CR +L V L + + ELY RLR VY+PS
Sbjct: 224 PVNAEVAKAWAILGYFYGFMGDTTTFQEYLGLSDSFLTDSIERGSTDILPAGFAEIIRHKQTVKVYAGNLDAAYIDFLGARRRDPPQANPAATELDVFRYVTQSHTAFEQLVFEKVCENSATIRPLSDDEPCEDDGGCGSPHGNPPQAEEVSDAMVTGLRDGLIDFEHLQEAVDRS-NIRQGIGGLLINMNLALQKAGKGDAGGALERLRHCVEVFERYPGVCRCMMLWCHVSHSILGALAAINDSRARELYDRLRNVYNPS 484
BLAST of mRNA_Ecto-sp9_F_contig1181.1491.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU24_ECTSI) HSP 1 Score: 296 bits (757), Expect = 4.610e-90 Identity = 159/270 (58.89%), Postives = 196/270 (72.59%), Query Frame = 1
Query: 4 PVAPPRVRA*AILGYFYGSMGDMANYEEYLKLSGSFLIDSMQQGSTDMLPAGFAEIVSQKDTVQVYSGHLDAAGIESLGTLRQDAPQIKPAACEGDLYRYVAQSHAAFEQVVFERACQNSATRRHSKEDGPCEDNGGGAILHGNAPQAEEVSDAMVAALNNGLVDFEHLQETADRRPNIRTGVGGLLINITLAFQKAVNGDAGGALERFGHCVEVFERYLGLCRYRIL*PFVVRPWHFHLVLLPPTVPPELYSRLREVYDPSLPV-FLSA 810
PV A AILGYFYG MGD A ++EYL L+ SFL DS+++GST++LPAGFAEI+ + TV+VY+GHLDAA I+ LG+ R D PQ+ PAA EGDL+RY +QS AFE++VFE+AC+ S+ RRH +D P E++ GG HG APQAE+VSDAMV L +GL+DFEHLQET DR NIR G+GGLLIN+ LAFQKA GDAGGALER GHCVE FERY G+CR +L L + + ELY+RLR+VY+PS P FL A
Sbjct: 151 PVNAEVAMAWAILGYFYGFMGDTATFQEYLGLADSFLTDSIERGSTNILPAGFAEIIRLEQTVKVYTGHLDAAYIDFLGSRRGDPPQVNPAANEGDLFRYFSQSLNAFEELVFEKACEKSSIRRHLSDDEPWEEDRGGGSPHGAAPQAEDVSDAMVMGLQDGLIDFEHLQETVDRS-NIRKGIGGLLINMYLAFQKAGKGDAGGALERLGHCVEAFERYPGVCRCMMLWCHASHSILGALAAIKSSRARELYNRLRDVYNPSRPASFLPA 419
BLAST of mRNA_Ecto-sp9_F_contig1181.1491.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU28_ECTSI) HSP 1 Score: 290 bits (742), Expect = 1.400e-88 Identity = 155/264 (58.71%), Postives = 189/264 (71.59%), Query Frame = 1
Query: 4 PVAPPRVRA*AILGYFYGSMGDMANYEEYLKLSGSFLIDSMQQGSTDMLPAGFAEIVSQKDTVQVYSGHLDAAGIESLGTLRQDAPQIKPAACEGDLYRYVAQSHAAFEQVVFERACQNSATRRHSKEDGPCEDNGGGAILHGNAPQAEEVSDAMVAALNNGLVDFEHLQETADRRPNIRTGVGGLLINITLAFQKAVNGDAGGALERFGHCVEVFERYLGLCRYRIL*PFVVRPWHFHLVLLPPTVPPELYSRLREVYDPSLP 795
PV +A AILGY Y MGD YEEYLKLS SFLIDS++QGSTDMLPAGFAE+V K+T + YSG++DA SLG Q QI PAA EGD++RYVAQS AFEQVVFE++C+NSA RRHS +D C++ GGA G+ PQ EEVSDAMVA +GL++FE+LQ+T DR PN+ TG+ GLLIN+TLA+QKA NGDAGGALERFG CV+VFERY G+CR + L + + LY+RLR+VY+PS P
Sbjct: 92 PVNAEVAKAWAILGYLYSYMGDTEKYEEYLKLSASFLIDSIEQGSTDMLPAGFAEMVHHKETAKAYSGNVDATDNGSLGAHHQHPLQINPAASEGDVFRYVAQSLIAFEQVVFEKSCENSAARRHSSDDKLCDETTGGATPLGHTPQVEEVSDAMVAGFKDGLIEFEYLQDTVDR-PNVGTGIVGLLINMTLAYQKAANGDAGGALERFGQCVDVFERYPGVCRCMFW-CHIAHGILGSLAAIDDSRAGGLYNRLRDVYNPSRP 353
BLAST of mRNA_Ecto-sp9_F_contig1181.1491.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU19_ECTSI) HSP 1 Score: 287 bits (735), Expect = 4.340e-88 Identity = 165/266 (62.03%), Postives = 183/266 (68.80%), Query Frame = 1
Query: 4 PVAPPRVRA*AILGYFYGSMGDMANYEEYLKLSGSFLIDSMQQGSTDMLPAGFAEIVSQKDTVQVYSGHLDAAGIESLGTLRQDAPQIKPAACEGDLYRYVAQSHAAFEQVVFERACQNSATRRHSKEDGPCEDNGGGAILHGNAPQAEEVSDAMVAALNNGLVDFEHLQETADRRPNIRTGVGGLLINITLAFQKAVNGDAGGALERFGHCVEVFERYLGLCRYRIL*PFVVRPWHFHLVLLPPTVPPELYSRLREVYDPSLPVF 801
PV +A AILGYF+GSMGDMANY EYLKLSGSFL+DS++QGSTDMLPAGFAEI+ QKD VQVYSGHLDA GIESL RQDAPQIKPAACEGDLYRYVAQS AFEQ VFERAC+N+ATRR S+E+ CEDN GAI H NAPQAEEVS MVAAL +GL+DFEHLQE ADR PNIRTG+GGLLIN+ Q + GAL R GL Y+RLREVY+PS P +
Sbjct: 132 PVNAEVAKAWAILGYFHGSMGDMANYVEYLKLSGSFLMDSIEQGSTDMLPAGFAEIIRQKDNVQVYSGHLDATGIESLVAQRQDAPQIKPAACEGDLYRYVAQSLTAFEQDVFERACENTATRRQSRENEACEDNRSGAIPHDNAPQAEEVSAIMVAALKDGLIDFEHLQEIADR-PNIRTGIGGLLINMCHLAQCVL-----GALAAIDD-----SRARGL-----------------------------YARLREVYNPSRPSY 357
BLAST of mRNA_Ecto-sp9_F_contig1181.1491.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU25_ECTSI) HSP 1 Score: 258 bits (659), Expect = 1.210e-75 Identity = 140/255 (54.90%), Postives = 174/255 (68.24%), Query Frame = 1
Query: 4 PVAPPRVRA*AILGYFYGSMGDMANYEEYLKLSGSFLIDSMQQGSTDMLPAGFAEIVSQKDTVQVYSGHLDAAGIESLGTLRQDAPQIKPAACEGDLYRYVAQSHAAFEQVVFERACQNSATRRHSKEDGPCEDNGGGAILHGNAPQAEEVSDAMVAALNNGLVDFEHLQETADRRPNIRTGVGGLLINITLAFQKAVNGDAGGALERFGHCVEVFERYLGLCRYRIL*PFVVRPWHFHLVLLPPTVPPELYSRL 768
PV +A AI GYFYG MGD A ++EYL L+ SFL DS+++GSTD+LPAGFAEI+ K TV+VY+G+LDAA I+ LG+ R++ PQ+ PAA EGDLYRY Q+ AAFE++VFE+A ++ GG HG PQAE+VSDAMV AL +GL+DF HLQET DR PNIR G+GGLL+N+ LAF KA NGD GGA ER HCVEVFERY G+CR +L V L + + ELY+RL
Sbjct: 151 PVNAEVAKAWAISGYFYGFMGDTATFQEYLGLADSFLTDSIERGSTDILPAGFAEIIRLKQTVKVYAGNLDAAYIDFLGSRRREPPQVNPAANEGDLYRYFCQASAAFEELVFEKAXXXXXXXXXXXXXXXXXEDRGGGSSHGADPQAEDVSDAMVTALKDGLIDFGHLQETVDR-PNIRKGIGGLLMNMALAFLKATNGDTGGAFERLEHCVEVFERYPGVCRCMMLWCHVSHSILAALAAIKSSRARELYNRL 404
BLAST of mRNA_Ecto-sp9_F_contig1181.1491.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6K6_ECTSI) HSP 1 Score: 245 bits (625), Expect = 1.340e-75 Identity = 132/219 (60.27%), Postives = 154/219 (70.32%), Query Frame = 1
Query: 25 RA*AILGYFYGSMGDMANYEEYLKLSGSFLIDSMQQGSTDMLPAGFAEIVSQKDTVQVYSGHLDAAGIESL--GTLRQDAPQIKPAACEGDLYRYVAQSHAAFEQVVFERACQNSATRRHSKEDGPCEDNGGGAILHGNAPQAEEVSDAMVAALNNGLVDFEHLQETADRRPNIRTGVGGLLINITLAFQKAVNGDAGGALERFGHCVEVFERYLGLCR 675
RA AILGY G MG+ A YEEY+KLS SFL ++QQGSTDMLP+GFAE++ Q + VQ YSG +D I+SL G RQ PQI PAACEGD+YRYV QS AF Q+ ERAC+++ R S +D PCE++ G HGNAPQAEEVS AMVA L + L+ FEHLQE ADR TLAFQKA NGDAGGA+ERFG+CVEVFE Y GLCR
Sbjct: 5 RASAILGYLLGFMGETAKYEEYMKLSASFLATAIQQGSTDMLPSGFAEMIDQTN-VQAYSGDVDTPDIQSLAAGHQRQPRPQINPAACEGDMYRYVTQSIIAFTQLALERACEDTVMIRPSSDDEPCEEDRGDIKPHGNAPQAEEVSGAMVAGLKDNLIAFEHLQEAADR---------------TLAFQKAANGDAGGAMERFGYCVEVFELYPGLCR 207 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1181.1491.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig1181.1491.1 >prot_Ecto-sp9_F_contig1181.1491.1 ID=prot_Ecto-sp9_F_contig1181.1491.1|Name=mRNA_Ecto-sp9_F_contig1181.1491.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=210bp MGDMANYEEYLKLSGSFLIDSMQQGSTDMLPAGFAEIVSQKDTVQVYSGHback to top mRNA from alignment at Ecto-sp9_F_contig1181:6108..10866+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig1181.1491.1 ID=mRNA_Ecto-sp9_F_contig1181.1491.1|Name=mRNA_Ecto-sp9_F_contig1181.1491.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=4759bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1181:6108..10866+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1181:6108..10866+ >mRNA_Ecto-sp9_F_contig1181.1491.1 ID=mRNA_Ecto-sp9_F_contig1181.1491.1|Name=mRNA_Ecto-sp9_F_contig1181.1491.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1260bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1181:6108..10866+ (Ectocarpus species9 EcSCA_722f female)back to top |