mRNA_Ecto-sp9_F_contig1180.1488.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig1180.1488.1 vs.
Match: Superoxide (dismutase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ69_ECTSI) HSP 1 Score: 467 bits (1201), Expect = 7.500e-161 Identity = 236/245 (96.33%), Postives = 240/245 (97.96%), Query Frame = 2
Query: 50 KVPSMRVSGGLLATLVTVASASSRLDVIDLPTGFFPEGITSGEGWTAFVGSLVDGNIWKGDLKTGEGEVMELDAPGPAAGLSHDRRSGYLFVAGAFSGTGRVYDEDFALVADLDFGNVGTSIISDVVVTKTAAFYTDSFQPHIYKVNLDRETGALVDGSSFETLVLGDNFPFVEEVVNLNGIEVTDDGSALIVVNSESQQVYAVDPDTGDATVIDLGGDVLGPRGDGLVLRKNTLWVSDNVLEQI 784
+VPSMRVSGGLLATLVTV SASSRLDVIDLPTGF PEGITSG GWTAFVGSLVDGNIWKGDLKTGEGEVMELDAPGPAAGLSHDRRSGYLFVAGAFSGTGRVYDEDFALVADLDFG+VGTSII+DVVVTK AAFYTDSFQPHIYKVNLDRETGALVDGSSFETLVLGDNFPFVEE +NLNGIEVTDDGSALIVVNSESQQVYAVDPDTGDATVIDLGGDVLGPRGDGLVLRKNTLWVSDNVLEQI
Sbjct: 19 EVPSMRVSGGLLATLVTVTSASSRLDVIDLPTGFSPEGITSGGGWTAFVGSLVDGNIWKGDLKTGEGEVMELDAPGPAAGLSHDRRSGYLFVAGAFSGTGRVYDEDFALVADLDFGDVGTSIINDVVVTKGAAFYTDSFQPHIYKVNLDRETGALVDGSSFETLVLGDNFPFVEEAINLNGIEVTDDGSALIVVNSESQQVYAVDPDTGDATVIDLGGDVLGPRGDGLVLRKNTLWVSDNVLEQI 263
BLAST of mRNA_Ecto-sp9_F_contig1180.1488.1 vs.
Match: Superoxide (dismutase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPY1_ECTSI) HSP 1 Score: 353 bits (905), Expect = 2.390e-116 Identity = 178/244 (72.95%), Postives = 202/244 (82.79%), Query Frame = 2
Query: 62 MRVSGGLLAT--LVTVASASSRLDVIDLPTGFFPEGITSGEGWTAFVGSLVDGNIWKGDLKTGEGEVMELDAPGPAAGLSHDRRSGYLFVAGAFSGTGRVYDEDFALVADLDFGNVGTSIISDVVVTKTAAFYTDSFQPHIYKVNLDRETGALVDGSSFETLVLGDNFPFVEEVVNLNGIEVTDDGSALIVVNSESQQVYAVDPDTGDATVIDLGGDVLGPRGDGLVLRKNTLWVSDNVLEQIL 787
MR G LLA + + ASSRLDVIDLPTGFFPEGIT+GEGWTAFVGSL++GNIWKGDL+TG+GEV EL APGPA GL HDRRS YLFVAG GT RVYDEDFALVADL + +S ++DV++TKTAAF+TDSFQP IYKVNLDRETGALVDG + TLVL DN P +E N+NGIE TDDGSAL++VN ESQQ++AVDPDTG AT+IDLGG++L RGDGLVLRKNTLWV DN LEQIL
Sbjct: 1 MRPFGVLLAASWAIIASEASSRLDVIDLPTGFFPEGITNGEGWTAFVGSLLNGNIWKGDLETGQGEVFELGAPGPAVGLDHDRRSDYLFVAGGPVGTARVYDEDFALVADLALSDGNSSFVNDVIITKTAAFFTDSFQPKIYKVNLDRETGALVDGLAVHTLVLSDNVPVLEGAFNVNGIEATDDGSALVIVNMESQQLFAVDPDTGAATLIDLGGELLPGRGDGLVLRKNTLWVVDNALEQIL 244
BLAST of mRNA_Ecto-sp9_F_contig1180.1488.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L833_9PHAE) HSP 1 Score: 270 bits (690), Expect = 1.010e-84 Identity = 157/241 (65.15%), Postives = 167/241 (69.29%), Query Frame = 2
Query: 62 MRVSGGLLATLVTVASASSRLDVIDLPTGFFPEGITSGEGWTAFVGSLVDGNIWKGDLKTGEGEVMELDAPGPAAGLSHDRRSGYLFVAGAFSGTGRVYDEDFALVADLDFGNVGTSIISDVVVTKTAAFYTDSFQPHIYKVNLDRETGALVDGSSFETLVLGDNFPFVEEVVNLNGIEVTDDGSALIVVNSESQQVYAVDPDTGDATVIDLGGDVLGPRGDGLVLRKNTLWVSDNVLEQI 784
MRVSGGLLATLVTVAS SSRLD + + +GN WK DLKTGEG VMELDAPGPAAGLSHDRRSGYLFVAGAFSGTGRVYDEDFALVADL FG+VGTS+I+DVVVTKTAAFYTDS PHI KV TD+ S LIVVNSESQQVYAVDPDTGDATV+DLGGDVLGPRGDGLVLRK+TL VSDNVLE+I
Sbjct: 1 MRVSGGLLATLVTVASTSSRLDPF----------------YNSASVRAPEGNNWKDDLKTGEGGVMELDAPGPAAGLSHDRRSGYLFVAGAFSGTGRVYDEDFALVADLAFGDVGTSMINDVVVTKTAAFYTDSIHPHINKV--------------------------------------TDNDSPLIVVNSESQQVYAVDPDTGDATVVDLGGDVLGPRGDGLVLRKDTL-VSDNVLEKI 186
BLAST of mRNA_Ecto-sp9_F_contig1180.1488.1 vs.
Match: Superoxide (dismutase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G508_ECTSI) HSP 1 Score: 203 bits (517), Expect = 5.240e-58 Identity = 119/248 (47.98%), Postives = 163/248 (65.73%), Query Frame = 2
Query: 74 GGLLATLVTVASASSRLDVIDLPTGFFPEGITSGEGWTAFVGSLVDGNIWKGDLKTGEGEVMELDAPGPAA-GLSHDRRSGYLFVAGAFSGTGRVYD--EDFALVADLDFGNVGTSIISDVVVTKTA--AFYTDSFQPHIYKVNLDRETGALVDGSSF--ETLVLGDNFPF------VEEVVNLNGIEVTDDGSALIVVNSESQQVYAVDPDTGDATVIDLGGD-VLGPRGDGLVLRKNTLWVSDNVL 775
G LL+ + A + RLD+IDLP GF PEG+T G G +V + G+IWKGDL+TG G V+ G A G+ DRRS YL+V GAFSG+ +YD +DF+LVA++ G VG S+++DV++ + A+ T+S Q Y++ LD E G L +G + E + L +F F ++ +N NGI +TDD S+LI+VN +S +++AVDPDTG AT+IDLGGD +LG GDGLVLRKNTLWV N L
Sbjct: 5 GSLLSLAIVPAVLAGRLDLIDLPVGFQPEGVTLGHGQEVYVSAFTGGSIWKGDLETGVGSVVIEGGNGTTALGIDFDRRSDYLWVCGAFSGSLAIYDTTDDFSLVAEIQLGTVGASLVNDVIIHPRSEYAYITESSQLQFYRIALD-EYGRLPNGPNTVAEVIPLSSDFSFQPGEIIADQALNSNGIVITDDLSSLIIVNYQSGELFAVDPDTGKATLIDLGGDLILG--GDGLVLRKNTLWVCQNRL 249
BLAST of mRNA_Ecto-sp9_F_contig1180.1488.1 vs.
Match: Superoxide (dismutase n=1 Tax=Flavilitoribacter nigricans DSM 23189 = NBRC 102662 TaxID=1122177 RepID=A0A2D0NC79_9BACT) HSP 1 Score: 192 bits (487), Expect = 1.190e-53 Identity = 114/243 (46.91%), Postives = 146/243 (60.08%), Query Frame = 2
Query: 98 TVASASSRLDVIDLPTGFFPEGITSGEGWTAFVGSLVDGNIWKGDLKTGEGEVMEL-DAPGPAAGLSHDRRSGYLFVAGAFSGTGRVYDEDFAL-VADLDFGNVGTSIISDVVVTKTAAFYTDSFQPHIYKVNLDRETGALVDGSSFETLVLGDNFPFVEEVVNLNGIEVTDDGSALIVVNSESQQVYAVDPDTGDATVIDLGGDVLGPRGDGLVLRKNTLWVSDNVLEQILRCLFRLTCLAG 820
T+ + S D+I LP GF PEGI +G G +VGSL DG+I++GD +TG GEV D A G+S D R+ YLFVAG GTG + D V DFG + ++DV+VTK AA++TDSF P+IYKV L TG+ D + E + LG +F FV N NGIE DG+ALIVVN + +Y VDP+TGDAT+IDL GD + GDG++L TL+V N L QI L G
Sbjct: 36 TLENRQSYPDLIPLPDGFKPEGIVAGTGSDFYVGSLADGSIYRGDFRTGSGEVFYTPDGANTAVGMSFDSRTKYLFVAGGGFGTGYIVDTRTGTEVVSYDFGG---AFVNDVIVTKDAAYFTDSFTPYIYKVPLG-PTGSPADAADVEAIELGGDFEFVPGNFNANGIEAIPDGTALIVVNGGTGDLYLVDPETGDATLIDLNGDSVN-NGDGILLVGKTLYVVQNFLNQIAEVKLSTDYLTG 273
BLAST of mRNA_Ecto-sp9_F_contig1180.1488.1 vs.
Match: Superoxide (dismutase n=1 Tax=Anaerolineaceae bacterium TaxID=2024896 RepID=A0A2E0ZGA0_9CHLR) HSP 1 Score: 189 bits (480), Expect = 7.300e-53 Identity = 119/246 (48.37%), Postives = 153/246 (62.20%), Query Frame = 2
Query: 68 VSGGLLATLVTVASASSRL-----DVIDLPTGFFPEGITSGEGWTAFVGSLVDGNIWKGDLKTGEGEVMELDAPG-PAAGLSHDRRSGYLFVAGAFSGTGRVYDEDFA-LVADLDFGNVGTSIISDVVVTKTAAFYTDSFQPHIYKVNLDRETGALVDGSSFETLVLGDNFPFVEEVVNLNGIEVTDDGSALIVVNSESQQVYAVDPDTGDATVIDLGGDVLGPRGDGLVLRKNTLWVSDNVLEQI 784
V G +L TL+T+A AS +VI LP GF PEGI GEG TA+ GSL DG+I+ DL TG GE++ L+ PG PA GL DRR+GYLFV+G +G GR+Y+ LV DF ++DV+VT AA++TDSF P +YKV+LD D TL L +F FV N NGI T +G+ALI+V+S ++Y VDP TG+AT+IDLGG+ + GDGLVL L+V N L QI
Sbjct: 8 VVGLILLTLLTLAVASPAAAQRYPEVIPLPNGFQPEGIVVGEGNTAYAGSLADGDIYTVDLSTGAGEIL-LEGPGTPAVGLDFDRRTGYLFVSGGPNGDGRIYNTHTGDLVTSYDFAG---GFVNDVIVTPHAAYFTDSFMPVLYKVDLDDSGTPGADS----TLSLSGDFVFVPGGFNTNGIVATPNGNALIIVHSSRGELYKVDPQTGEATLIDLGGENVN-SGDGLVLVARKLFVVQNSLNQI 244
BLAST of mRNA_Ecto-sp9_F_contig1180.1488.1 vs.
Match: Superoxide (dismutase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3N5S5I5_9CHLR) HSP 1 Score: 182 bits (462), Expect = 4.330e-50 Identity = 117/266 (43.98%), Postives = 159/266 (59.77%), Query Frame = 2
Query: 89 TLVTVASASSRL-DVIDLPTGFFPEGITSGEGWTAFVGSLVDGNIWKGDLKTGEGEVMELDAPGPAA-GLSHDRRSGYLFVAGAFSGTGRVYD-EDFALVADLDFGNVGTSIISDVVVTKTAAFYTDSFQPHIYKVNLDRETGALVDGSSFETLVLGDNFPFVEEVVNLNGIEVTDDGSALIVVNSESQQVYAVDPDTGDATVIDLGGDVLGPRGDGLVLRKNTLWVSDNVLEQI----LRCLFRLTCLAGRWRPARYRTPSSTAR 865
TL+ A A +VI LP GF PEGI SG G T +VGS+ G +++GD+++GEGEV+ G +A GL +D RSG LFV+G +G VYD + A VA++ S I+DVV+TK AA++T+SFQP Y+V+L R G L + E + LG +F F+ + N NGI T +G ALI+VNS +Y VDP TGDA IDLGG + P GDGL+L+ TL+V N L QI L+ F + +R P++ AR
Sbjct: 23 TLIGAAPAHQAFPEVIPLPNGFQPEGIASGRGNTFYVGSIPTGAVYRGDVRSGEGEVLVPAQEGRSAIGLKYDSRSGLLFVSGGNTGFAYVYDGKTGANVAEIQLSTT-PSFINDVVITKDAAYFTNSFQPVFYRVSLARH-GGLPPAPTSEEVPLGGDFQFIPDAFNSNGIAATPNGKALIIVNSSEGALYKVDPATGDAKRIDLGGGSV-PNGDGLLLQGKTLYVVQNQLNQIAVIRLKSDFTSGSIVNTITSELFRVPTTIAR 285
BLAST of mRNA_Ecto-sp9_F_contig1180.1488.1 vs.
Match: Superoxide (dismutase n=2 Tax=Haloferax TaxID=2251 RepID=A0A643JWK0_9EURY) HSP 1 Score: 178 bits (451), Expect = 1.860e-48 Identity = 110/243 (45.27%), Postives = 151/243 (62.14%), Query Frame = 2
Query: 59 SMRVSGGLLATLVTVASASSRLDVIDLPTGFFPEGITSGEGWTAFVGSLVDGNIWKGDLKTGEGEVMELDAPGPAAGLSHDRRSGYLFVAGAFSGTGRVYDEDF-ALVADLDFGNVGTSIISDVVVTKTAAFYTDSFQPHIYKVNLDRETGALVDGSSFETLVLGDNFPFVEEVVNLNGIEVTDDGSALIVVNSESQQVYAVDPDTGDATVIDLGGDVLGPRGDGLVLRKNTLWVSDNVLEQI 784
++ ++G + T A+ S+ VI LP GF PEGI +G G FVGSL G I++GDL+TG G+V GPA GLSHD RS YLFVAG +G VYD D ALVAD + + + ++DVVVT+TAA++TDS +P +Y++ L G + + S+ E + L +F V N NGI+ +G LIVVN+ + +Y VDP +GDAT IDLGG+ + GDG++L TL+V N L QI
Sbjct: 21 ALPIAGLAVVGTGTAAAKSAFPAVIPLPIGFQPEGIVTGLGTDFFVGSLAGGAIYRGDLRTGSGDVFVPPTGGPAVGLSHDARSNYLFVAGGPTGRASVYDADTGALVADYELQD--SQFVNDVVVTRTAAYFTDSARPSLYRIPLGAG-GDVPNQSAVEEIPLSGDFTSVAGF-NANGIDAPPNGKYLIVVNTSTGLLYKVDPASGDATEIDLGGETV-TAGDGILLAGRTLYVVRNQLNQI 258
BLAST of mRNA_Ecto-sp9_F_contig1180.1488.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM39_9PHAE) HSP 1 Score: 172 bits (437), Expect = 6.180e-48 Identity = 94/175 (53.71%), Postives = 109/175 (62.29%), Query Frame = 2
Query: 209 DGNIWKGDLKTGEGEVMELDAPGPAAGLSHDRRSGYLFVAGAFSGTGRVYDEDFALVADLDFGNVGTSIISDVVVTKTAAFYTDSFQPHIYK------------------------------------------VNLDRETGALVDGSSFETLVLGDNFPFVEEVVNLNGIEVTD 607
+GNIWKGDL+TG+GEV EL APGPA GL HDRRSGYLFVAG GT RVYDEDFALVADL + +S ++DV++TKTAA++TDSFQP IYK VNLDRETGALVDG + TLVL DN P +E N+NGIEV+D
Sbjct: 6 NGNIWKGDLETGQGEVFELGAPGPAVGLDHDRRSGYLFVAGGPVGTARVYDEDFALVADLVLSDGNSSFVNDVIITKTAAYFTDSFQPKIYKARQLRPSLNEFRPREWGHSMSSRQHPVLQFEQVSTVSIEEKNVNLDRETGALVDGLAVHTLVLSDNVPVLEGAFNVNGIEVSD 180
BLAST of mRNA_Ecto-sp9_F_contig1180.1488.1 vs.
Match: Superoxide (dismutase (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3N5UU31_9CHLR) HSP 1 Score: 173 bits (438), Expect = 1.060e-46 Identity = 108/253 (42.69%), Postives = 154/253 (60.87%), Query Frame = 2
Query: 125 DVIDLPTGFFPEGITSGEGWTAFVGSLVDGNIWKGDLKTGEGEVMELDAPGPAA-GLSHDRRSGYLFVAGAFSGTGRVYD-EDFALVADLDFGNVGTSIISDVVVTKTAAFYTDSFQPHIYKVNLDRETGALVDGSSFETLVLGDNFPFVEEVVNLNGIEVTDDGSALIVVNSESQQVYAVDPDTGDATVIDLGGDVLGPRGDGLVLRKNTLWVSDNVLEQI----LRCLFRLTCLAGRWRPARYRTPSSTAR 865
+VI LP GF PEGI SG+G T +VGS+ G +++GDL++GEGEV+ G +A GL +D RSG LFV+G +G YD + A VA++ + S I+DVV+TK AA++T+SFQP +++V L ++ G L + E + LG ++ F N NGI T +G LI+VNS +Y VDP TG+AT IDLGG + P GDGL+L+ TL+V N L +I L+ F + +R P++ AR
Sbjct: 36 EVIPLPNGFQPEGIASGKGTTFYVGSIPTGAVFRGDLRSGEGEVLVPAQAGRSAIGLKYDERSGLLFVSGGNTGYAYFYDGKTGANVAEIQLSTL-PSFINDVVITKEAAYFTNSFQPVLHRVPLAKK-GGLPPAPTSEEIPLGGDYQFTPGAFNANGIAATPNGKTLIIVNSTEGALYKVDPGTGNATRIDLGGGSV-PNGDGLLLQGKTLYVVQNQLNRIAVIRLKSDFSAGTIVNTITSPLFRVPTTIAR 285 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1180.1488.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig1180.1488.1 >prot_Ecto-sp9_F_contig1180.1488.1 ID=prot_Ecto-sp9_F_contig1180.1488.1|Name=mRNA_Ecto-sp9_F_contig1180.1488.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=281bp MRVSGGLLATLVTVASASSRLDVIDLPTGFFPEGITSGEGWTAFVGSLVDback to top mRNA from alignment at Ecto-sp9_F_contig1180:8869..16052- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig1180.1488.1 ID=mRNA_Ecto-sp9_F_contig1180.1488.1|Name=mRNA_Ecto-sp9_F_contig1180.1488.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=7184bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1180:8869..16052- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1180:8869..16052- >mRNA_Ecto-sp9_F_contig1180.1488.1 ID=mRNA_Ecto-sp9_F_contig1180.1488.1|Name=mRNA_Ecto-sp9_F_contig1180.1488.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1686bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1180:8869..16052- (Ectocarpus species9 EcSCA_722f female)back to top |