mRNA_Ecto-sp9_F_contig118.1484.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig118.1484.1 vs.
Match: BAH (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K5B5_9PHAE) HSP 1 Score: 1993 bits (5163), Expect = 0.000e+0 Identity = 1138/1290 (88.22%), Postives = 1169/1290 (90.62%), Query Frame = 1
Query: 1 MSAATFSNTANGGPSSPALSAPELGGHHAAVAMAVAAAPSPAAAVGPAAGRDDDIVRALAFAEEPTAAVLAQTANASSNSKGGSSSTDGGQGGESTDVSVFAKAEDPESCVQPSRPAEDSSSGTAVRHNTGGAASATSRSPGVSASSGSTKASWHDRRLAASTTNSANGGRVGIAENGSATAGARGSDARVNRGTAAGSVGAGDESDAGSVDEDNDDYTWFSSEKRVSGGERKHGRGRLGGGRVYDRVRITDHAEEINTLKQRLADGSTGESDGREKLRELEAKTFTIKIGDTIEIHSGNDAQPFVGKLVLLDRGTRRFRVRWYFVRHEVDAQLAEDMEPKEILLSDCLSSYQLLDTVDRKVDTVRRRPPHAQELPSNTYLCYRGYDMKAKMIVPLLEDGSLEKFRRGKPSTKKGEASTRGAVSPGASSAAAAHTPPRASTSSSIMSPSNPSQEDNDPSELVLLQRWNRTGPEFDVYVPKWTEPTRRTKPPPEEHTAAQSRFDDCQQWSTQALPFEPDALKEYLTRAKAIAPIIPGTIVYIRPRPDGQWGDGKTVKQVRRPNGSGGG-SGVSAGLDTGAGPRLSSMARSTYRWGLVAEPPPPAQKQQLTREQVPSRTEALPVQGAPNIPMMQEPATGSTGVEMPMTPQWFRQQQXXXXXXXXXXYVRFEQQGQQQLMQXXXXXXXXXXXYQRRDHISGESFRPQLQLPLNSLLQSNLIQQGSNLGGLAAAHPMAAQGVAPASTPRGGGNPHALAPSSVPGDAMAKGGAGATNEESVVWIASPSEGSSPLQVGRSRIVGREFEEEAMNILWDARGQFGVALDIVRSKRYQDDLKRRLKNAGEIWTFQQVKAAVKSCTKLAAERRNEEMGELGDECTDEADYGVASKPFRCVVDFSRRFATLSRFGQNSKRRGTAEAATVAQGAAATASTTAKRQRPKPGTYNDARPHKKRARAGSSGSDRSCKQAEQSYXXXXXXXXXXXXXXXDDNYDPNESEGSSVIFVRGNKRRQRRKHRVEAGSGDSSQEDRKVDVTPTATT-RSRKPTSPPLDPSPGVIHDLCSSDEEDEMQDLSRKGPAAGSADAPAAGRSHGAAGRGDHEGHQAMAPATAAKVEAAVAARETRGVAAEAAARAEADGADVENGGRAXXXXXXXXXAGIPSACPKEARGGTMSTEREGDGSGVGSDVTPPARDDSPVPGVASGNTGGEAMAPRPQTETGSVLHVFMDRCKATLTPELFDKFVSALSQYREQRLAIGELVDVVGQCFNHLEEREVKLVKEFNSFLPPGNAVKITEA 3864
MSAATFSNTANGGPSSPALSAPE+GGHHAA+AMAVAAA GPAAGRDDDIVRALAFAEEPTAAVLAQTANASSN K GSSSTDGGQGGESTDVSVFAKAEDPESC+QPSR AEDSSSGTAVRH+TGGAASATSRSPG+SASSGST+ASWHDRRLAASTT+SANGGRV IAEN SATA ARG DA+VNR TAAGSVGAGDESDAGSVDEDNDDYTWFSSEKRVSGGERKHGRGRLGGGRVYDRVRITDHAEEINTLKQ+LADGS ESDGREKLRELEAKTFTIKIGDTIEIHSGNDAQPFVGKLVLLDRGTRRFRVRWYFVRHEVDAQLAEDMEPKEILLSDCLSSYQLLDTVDRKVDTVR RPPHAQELP+NTYLCYRGYDMKAKMIVPLLEDGSLEKFRRGKPST+KG+AS+RGAVSPGASSAAAAHTPPRASTSSSIMSPSNPSQEDNDPSELVLLQRWNRTGPEFDVYVPKWTEPTRRTKPPPEE+ AQSRFDDCQQWST+ALPFEPDALK+YL RAKAIAPIIPGTIVYIRPRPDGQWGDGKTVKQVRRPNGSGG S VSAGLDTGAGPRL+SMARSTYRWGLVAEPPPPAQKQQLTREQVPSRTEAL VQGAPNIPMMQEPATG+TGV+M MTPQWFR+QQ +VRFE+Q Q QLM XXXXXXXXXXXY RRDHISG+SFRPQLQLP NSLLQSNLIQQGSNLGGLA AH MAAQ VAPAS PRGGGNPHALAPSSVPGDAMAK AGATNEESVVWIASPSEGSSPLQV RSRIV REFEEEAMNILWDARGQFGVALDIV+SKRYQDDLKRRLKNAGEIWTFQQVKAAVK+CTKLAAERRNEEMGELGDECTDEADYGVASKPFRCVVDFSRRFATLSRFGQN+KRRGTAEAATVAQG AATASTTAKRQRPKPGTYNDARPHKKRARAGSSGSDRSCKQ EQSY XXXXXXXXXXXXXX RSRKPTSPPLDPS GVIHDLCSSDEED++ DLSRKGPAAGSADAP+AGRS GA GRGDHEGHQAMAP TAAKVEAA AARETRGVA EAAARAEADG DVENGG AXXXXXXXXXAG+PSACPKEA GGTMSTEREGDGSGVGSD PPARDDSPVPGVASGNTGGEAMAPRPQ ETGSVLHVFMDRCKATLTPE FDKFVSALSQYREQRL+IGELVDVVGQCFNH EEREVKLVKEFNSFLPPGNAVKIT A
Sbjct: 1 MSAATFSNTANGGPSSPALSAPEIGGHHAAMAMAVAAAXXXXXXXGPAAGRDDDIVRALAFAEEPTAAVLAQTANASSNIKVGSSSTDGGQGGESTDVSVFAKAEDPESCLQPSRAAEDSSSGTAVRHHTGGAASATSRSPGLSASSGSTQASWHDRRLAASTTSSANGGRVEIAENRSATASARGLDAQVNRETAAGSVGAGDESDAGSVDEDNDDYTWFSSEKRVSGGERKHGRGRLGGGRVYDRVRITDHAEEINTLKQQLADGSIEESDGREKLRELEAKTFTIKIGDTIEIHSGNDAQPFVGKLVLLDRGTRRFRVRWYFVRHEVDAQLAEDMEPKEILLSDCLSSYQLLDTVDRKVDTVRTRPPHAQELPANTYLCYRGYDMKAKMIVPLLEDGSLEKFRRGKPSTRKGQASSRGAVSPGASSAAAAHTPPRASTSSSIMSPSNPSQEDNDPSELVLLQRWNRTGPEFDVYVPKWTEPTRRTKPPPEEYKVAQSRFDDCQQWSTEALPFEPDALKDYLARAKAIAPIIPGTIVYIRPRPDGQWGDGKTVKQVRRPNGSGGARSVVSAGLDTGAGPRLTSMARSTYRWGLVAEPPPPAQKQQLTREQVPSRTEALLVQGAPNIPMMQEPATGNTGVDMQMTPQWFREQQQQQQ------HVRFEEQRQXQLMXXXXXXXXXXXXYHRRDHISGDSFRPQLQLPPNSLLQSNLIQQGSNLGGLAGAHAMAAQEVAPASKPRGGGNPHALAPSSVPGDAMAK-EAGATNEESVVWIASPSEGSSPLQVERSRIVRREFEEEAMNILWDARGQFGVALDIVKSKRYQDDLKRRLKNAGEIWTFQQVKAAVKTCTKLAAERRNEEMGELGDECTDEADYGVASKPFRCVVDFSRRFATLSRFGQNTKRRGTAEAATVAQGVAATASTTAKRQRPKPGTYNDARPHKKRARAGSSGSDRSCKQ-EQSYEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSRKPTSPPLDPSLGVIHDLCSSDEEDDIHDLSRKGPAAGSADAPSAGRSPGAGGRGDHEGHQAMAPETAAKVEAAAAARETRGVAVEAAARAEADGVDVENGGPAXXXXXXXXXAGMPSACPKEACGGTMSTEREGDGSGVGSDAPPPARDDSPVPGVASGNTGGEAMAPRPQAETGSVLHVFMDRCKATLTPERFDKFVSALSQYREQRLSIGELVDVVGQCFNHHEEREVKLVKEFNSFLPPGNAVKITRA 1282 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig118.1484.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig118.1484.1 >prot_Ecto-sp9_F_contig118.1484.1 ID=prot_Ecto-sp9_F_contig118.1484.1|Name=mRNA_Ecto-sp9_F_contig118.1484.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=1289bp MSAATFSNTANGGPSSPALSAPELGGHHAAVAMAVAAAPSPAAAVGPAAGback to top mRNA from alignment at Ecto-sp9_F_contig118:8094..22879- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig118.1484.1 ID=mRNA_Ecto-sp9_F_contig118.1484.1|Name=mRNA_Ecto-sp9_F_contig118.1484.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=14786bp|location=Sequence derived from alignment at Ecto-sp9_F_contig118:8094..22879- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig118:8094..22879- >mRNA_Ecto-sp9_F_contig118.1484.1 ID=mRNA_Ecto-sp9_F_contig118.1484.1|Name=mRNA_Ecto-sp9_F_contig118.1484.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=7734bp|location=Sequence derived from alignment at Ecto-sp9_F_contig118:8094..22879- (Ectocarpus species9 EcSCA_722f female)back to top |