mRNA_Ecto-sp9_F_contig11798.1482.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11798.1482.1
Unique NamemRNA_Ecto-sp9_F_contig11798.1482.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11798.1482.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLB9_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 1.230e-36
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 1 
Query:    7 TRNVIKIGRPGYKVTKARDLSSNQRSLLFEVDYPEAEDGAQPRHRFMSAYEQKVEAPDKGYQVR 198
            TRNVIKIGRPGYKVTKARDLSSNQRSLLFEVDYPEAEDGAQPRHRFMSAYEQKVEAPDKGYQVR
Sbjct:  174 TRNVIKIGRPGYKVTKARDLSSNQRSLLFEVDYPEAEDGAQPRHRFMSAYEQKVEAPDKGYQVR 237
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11798.1482.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTA0_ECTSI)

HSP 1 Score: 130 bits (328), Expect = 8.070e-36
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 1 
Query:    1 VQTRNVIKIGRPGYKVTKARDLSSNQRSLLFEVDYPEAEDGAQPRHRFMSAYEQKVEAPDKGYQ 192
            VQTRNVIKIGRPGYKVTKARDLSSNQRSLLFEVDYPEAEDGAQPRHRFMSAYEQKVEAPDKGYQ
Sbjct:  182 VQTRNVIKIGRPGYKVTKARDLSSNQRSLLFEVDYPEAEDGAQPRHRFMSAYEQKVEAPDKGYQ 245
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11798.1482.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVT4_9STRA)

HSP 1 Score: 112 bits (280), Expect = 2.080e-28
Identity = 53/64 (82.81%), Postives = 58/64 (90.62%), Query Frame = 1 
Query:    1 VQTRNVIKIGRPGYKVTKARDLSSNQRSLLFEVDYPEAEDGAQPRHRFMSAYEQKVEAPDKGYQ 192
            VQTRNVIKIGRPGYKVTK+RD+ + QRSLLFEVDYPEA+DG QPRHRFMS+YEQKVEAP   YQ
Sbjct:  178 VQTRNVIKIGRPGYKVTKSRDVHTRQRSLLFEVDYPEADDGVQPRHRFMSSYEQKVEAPSNDYQ 241
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11798.1482.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZJ6_HETAK)

HSP 1 Score: 108 bits (270), Expect = 4.240e-27
Identity = 52/64 (81.25%), Postives = 56/64 (87.50%), Query Frame = 1 
Query:    1 VQTRNVIKIGRPGYKVTKARDLSSNQRSLLFEVDYPEAEDGAQPRHRFMSAYEQKVEAPDKGYQ 192
            V TR  IKIGRPGYKVTK+RD+ + QRSLLFEVD PE E+GAQPRHRFMSAYEQKVEAPDK YQ
Sbjct:  199 VPTRRTIKIGRPGYKVTKSRDVETKQRSLLFEVDCPEVEEGAQPRHRFMSAYEQKVEAPDKAYQ 262
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11798.1482.1 vs.
Match: Hypothetical (protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B1N4_9STRA)

HSP 1 Score: 107 bits (266), Expect = 1.220e-26
Identity = 50/61 (81.97%), Postives = 56/61 (91.80%), Query Frame = 1 
Query:   10 RNVIKIGRPGYKVTKARDLSSNQRSLLFEVDYPEAEDGAQPRHRFMSAYEQKVEAPDKGYQ 192
            R+ IKIGRPGYKVTK+RD ++ QRSLLFEVDYPEAE+G QPRHRFMSAYEQ+VEAPDK YQ
Sbjct:  162 RSSIKIGRPGYKVTKSRDAATKQRSLLFEVDYPEAEEGVQPRHRFMSAYEQRVEAPDKNYQ 222
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11798.1482.1 vs.
Match: Matrin-type (domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YC33_AURAN)

HSP 1 Score: 104 bits (260), Expect = 2.900e-26
Identity = 48/64 (75.00%), Postives = 57/64 (89.06%), Query Frame = 1 
Query:    1 VQTRNVIKIGRPGYKVTKARDLSSNQRSLLFEVDYPEAEDGAQPRHRFMSAYEQKVEAPDKGYQ 192
            V+ R+ IKIGRPGYKVTK+RD +++QR LLFEVDYPEA+D +QPRHRFMSAYEQ+VE PDK YQ
Sbjct:  103 VEKRHTIKIGRPGYKVTKSRDAATSQRCLLFEVDYPEADDASQPRHRFMSAYEQRVEPPDKAYQ 166
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11798.1482.1 vs.
Match: Hypothetical (protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZZ98_9STRA)

HSP 1 Score: 103 bits (256), Expect = 1.200e-25
Identity = 49/64 (76.56%), Postives = 55/64 (85.94%), Query Frame = 1 
Query:    1 VQTRNVIKIGRPGYKVTKARDLSSNQRSLLFEVDYPEAEDGAQPRHRFMSAYEQKVEAPDKGYQ 192
            V+ R+ IKIGRPGYKVTK+RD SS QR+LLFEVDYPEA+   QPRHRFMSAYEQ+VE PDK YQ
Sbjct:  103 VEKRHAIKIGRPGYKVTKSRDASSGQRALLFEVDYPEADATVQPRHRFMSAYEQRVEPPDKNYQ 166
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11798.1482.1 vs.
Match: Hypothetical (protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0HE94_9EUKA)

HSP 1 Score: 98.2 bits (243), Expect = 1.110e-23
Identity = 46/64 (71.88%), Postives = 53/64 (82.81%), Query Frame = 1 
Query:    1 VQTRNVIKIGRPGYKVTKARDLSSNQRSLLFEVDYPEAEDGAQPRHRFMSAYEQKVEAPDKGYQ 192
            V+ R  IKIGRPGY++TK  D  S QRSLLFEVDYPE E+G QPRHRFMSAYEQ+VEAP+K +Q
Sbjct:  105 VKPRKTIKIGRPGYRITKQMDPESEQRSLLFEVDYPEIEEGLQPRHRFMSAYEQRVEAPEKDWQ 168
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11798.1482.1 vs.
Match: Matrin-type (domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XGH0_DIALT)

HSP 1 Score: 95.9 bits (237), Expect = 7.850e-23
Identity = 44/64 (68.75%), Postives = 53/64 (82.81%), Query Frame = 1 
Query:    1 VQTRNVIKIGRPGYKVTKARDLSSNQRSLLFEVDYPEAEDGAQPRHRFMSAYEQKVEAPDKGYQ 192
            V TR  +KIGRPGY+VTK  +  + QRSLLF+V+YPE E+G QPRHRFMSAYEQKV+APDK +Q
Sbjct:  102 VHTRKTVKIGRPGYRVTKQIEPDTQQRSLLFQVEYPEIEEGLQPRHRFMSAYEQKVDAPDKDFQ 165
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11798.1482.1 vs.
Match: Matrin-type (domain-containing protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0G0Z6_9EUKA)

HSP 1 Score: 94.0 bits (232), Expect = 1.850e-22
Identity = 42/64 (65.62%), Postives = 51/64 (79.69%), Query Frame = 1 
Query:    1 VQTRNVIKIGRPGYKVTKARDLSSNQRSLLFEVDYPEAEDGAQPRHRFMSAYEQKVEAPDKGYQ 192
            V  +N +KIGRPGYKVTK +D ++NQ SLLF++DYPE  D  +PRHR MSAYEQ VEAPDK +Q
Sbjct:   58 VTVKNFVKIGRPGYKVTKQKDAATNQHSLLFQIDYPEIADDVKPRHRLMSAYEQNVEAPDKNWQ 121
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11798.1482.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized1.230e-36100.00protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized8.070e-36100.00protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized2.080e-2882.81protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Hypothetical4.240e-2781.25protein n=1 Tax=Heterosigma akashiwo TaxID=2829 Re... [more]
Hypothetical1.220e-2681.97protein n=1 Tax=Florenciella parvula TaxID=236787 ... [more]
Matrin-type2.900e-2675.00domain-containing protein n=1 Tax=Aureococcus anop... [more]
Hypothetical1.200e-2576.56protein n=1 Tax=Pelagomonas calceolata TaxID=35677... [more]
Hypothetical1.110e-2371.88protein n=1 Tax=Phaeocystis antarctica TaxID=33657... [more]
Matrin-type7.850e-2368.75domain-containing protein n=1 Tax=Diacronema luthe... [more]
Matrin-type1.850e-2265.63domain-containing protein n=1 Tax=Sphaeroforma arc... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11798contigEcto-sp9_F_contig11798:3415..3615 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.3
Seed ortholog evalue1.6e-28
Seed eggNOG ortholog2880.D8LTA0
Preferred namesap62
KEGG koko:K12826
KEGG Pathwayko03040,map03040
KEGG ModuleM00352
GOsGO:0000245,GO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005686,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0007275,GO:0007399,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0010720,GO:0010975,GO:0010976,GO:0016043,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0022008,GO:0022607,GO:0022613,GO:0022618,GO:0030154,GO:0030532,GO:0031344,GO:0031346,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0034622,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0046483,GO:0048518,GO:0048522,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0051094,GO:0051128,GO:0051130,GO:0051239,GO:0051240,GO:0051960,GO:0051962,GO:0060284,GO:0065003,GO:0065007,GO:0070013,GO:0071004,GO:0071010,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0097525,GO:0120035,GO:0120114,GO:1901360,GO:1901363,GO:1902494,GO:1990904,GO:2000026
EggNOG free text desc.spliceosomal complex assembly
EggNOG OGsCOG5246@1,KOG0227@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Hectar predicted targeting categoryother localisation
Exons1
Model size201
Cds size201
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928437.2607684-CDS-Ecto-sp9_F_contig11798:3414..36151622928437.2607684-CDS-Ecto-sp9_F_contig11798:3414..3615Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11798 3415..3615 -
1692277871.0058858-CDS-Ecto-sp9_F_contig11798:3414..36151692277871.0058858-CDS-Ecto-sp9_F_contig11798:3414..3615Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11798 3415..3615 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11798.1482.1prot_Ecto-sp9_F_contig11798.1482.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11798 3415..3615 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11798.1482.1

>prot_Ecto-sp9_F_contig11798.1482.1 ID=prot_Ecto-sp9_F_contig11798.1482.1|Name=mRNA_Ecto-sp9_F_contig11798.1482.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=67bp
VQTRNVIKIGRPGYKVTKARDLSSNQRSLLFEVDYPEAEDGAQPRHRFMS
AYEQKVEAPDKGYQVR*
back to top

mRNA from alignment at Ecto-sp9_F_contig11798:3415..3615-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11798.1482.1 ID=mRNA_Ecto-sp9_F_contig11798.1482.1|Name=mRNA_Ecto-sp9_F_contig11798.1482.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=201bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11798:3415..3615- (Ectocarpus species9 EcSCA_722f female)
GTGCAGACGCGTAACGTGATCAAGATCGGCCGTCCGGGGTACAAGGTCAC
CAAGGCAAGAGATCTATCTAGCAACCAGCGAAGCCTGCTGTTCGAGGTCG
ACTACCCGGAGGCGGAAGACGGGGCGCAGCCGCGACACCGGTTCATGTCG
GCGTACGAACAGAAGGTGGAGGCCCCCGACAAGGGATACCAGGTGCGATG
A
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11798:3415..3615-

>mRNA_Ecto-sp9_F_contig11798.1482.1 ID=mRNA_Ecto-sp9_F_contig11798.1482.1|Name=mRNA_Ecto-sp9_F_contig11798.1482.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=402bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11798:3415..3615- (Ectocarpus species9 EcSCA_722f female)
GTGCAGACGCGTAACGTGATCAAGATCGGCCGTCCGGGGTACAAGGTCAC
CAAGGCAAGAGATCTATCTAGCAACCAGCGAAGCCTGCTGTTCGAGGTCG
ACTACCCGGAGGCGGAAGACGGGGCGCAGCCGCGACACCGGTTCATGTCG
GCGTACGAACAGAAGGTGGAGGCCCCCGACAAGGGATACCAGGTGCGATG
AGTGCAGACGCGTAACGTGATCAAGATCGGCCGTCCGGGGTACAAGGTCA
CCAAGGCAAGAGATCTATCTAGCAACCAGCGAAGCCTGCTGTTCGAGGTC
GACTACCCGGAGGCGGAAGACGGGGCGCAGCCGCGACACCGGTTCATGTC
GGCGTACGAACAGAAGGTGGAGGCCCCCGACAAGGGATACCAGGTGCGAT
GA
back to top