mRNA_Ecto-sp9_F_contig11795.1480.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11795.1480.1
Unique NamemRNA_Ecto-sp9_F_contig11795.1480.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig11795.1480.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ27_ECTSI)

HSP 1 Score: 164 bits (416), Expect = 1.090e-44
Identity = 85/111 (76.58%), Postives = 92/111 (82.88%), Query Frame = -2 
Query:    3 ENTSRLKPTAASET------G*NFRKQRVPLVEDTPEEREETMDMFIGAMSANGCQHVMEAIEKVGPGFVDWGLDRLTEAKNASTLFELDDIGGEEHLLGKTPEEVAEGEK 317
            +N   L+   A++T      G   RKQRVPLVE+TPEEREETMDMF+GAMSANGCQ VMEAI+KV PGFVDWGLDRLTEAKNASTLFELDDIGGEEHLLGKT E VAEGEK
Sbjct:  335 QNARNLRKHVAAKTNGGVGDGIKLRKQRVPLVENTPEEREETMDMFVGAMSANGCQRVMEAIDKVDPGFVDWGLDRLTEAKNASTLFELDDIGGEEHLLGKTSEGVAEGEK 445
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BLAST of mRNA_Ecto-sp9_F_contig11795.1480.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2A3_9PHAE)

HSP 1 Score: 152 bits (385), Expect = 8.560e-40
Identity = 76/91 (83.52%), Postives = 80/91 (87.91%), Query Frame = -2 
Query:    3 G*NFRKQRVPLVEDTPEEREETMDMFIGAMSANGCQHVMEAIEKVGPGFVDWGLDRLTEAKNASTLFELDDIGGEEHLLGKTPEEVAEGEK 275
            G   RKQRVPLVEDTPE REE MDMF+GAMSANGCQ VMEA+E + PGFV+ GLDRLTEAK ASTLFELD IGGEEHLLGKTPEEVAEGEK
Sbjct:  587 GIKLRKQRVPLVEDTPEAREEAMDMFMGAMSANGCQRVMEAVETIDPGFVERGLDRLTEAKTASTLFELDGIGGEEHLLGKTPEEVAEGEK 677
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BLAST of mRNA_Ecto-sp9_F_contig11795.1480.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU51_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 1.420e-17
Identity = 40/84 (47.62%), Postives = 60/84 (71.43%), Query Frame = -2 
Query:   12 RKQRVPLVEDTPEEREETMDMFIGAMSANGCQHVMEAIEKVGPGFVDWGLDRLTEAKNASTLFELDDIGGEEHLLGKTPEEVAE 263
            RK R+ LV+D+PE+RE  +++++  +  +G + VMEAI+K+   F+DWG++RL EAK  ST F+ DDI G +HL G T E+V E
Sbjct:   61 RKCRIGLVDDSPEDRERNLEIYMRLVFVDGIRPVMEAIDKIDSEFIDWGVERLAEAKGVSTSFDRDDIKGIDHLFGGTREQVGE 144
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BLAST of mRNA_Ecto-sp9_F_contig11795.1480.1 vs.
Match: PHD-type (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPM1_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 2.440e-17
Identity = 52/138 (37.68%), Postives = 74/138 (53.62%), Query Frame = -2 
Query:    3 PTAATVRCRGPWITAIRSSRTRGICENTSRLKPTAASETG*NFRKQRVPLVEDTPEEREETMDMFIGAMSANGCQHVMEAIEKVGPGFVDWGLDRLTEAKNASTLFEL--------DDIGGEEHLLGKTPEEVAEGEK 392
            P    V   G      R+ R +   E +  + P A        RKQRV L+E TPEERE+ MDMF+ A++ NGC  +M+AI+K  PGFV+WG + L +A   S+++          DD   E+HLLG T  E+  G++
Sbjct: 1134 PAKQAVEASGKLFDVARNGRAKATAEKSGAVGPAA------KVRKQRVILLELTPEEREKAMDMFMAAITKNGCGRLMDAIKKHDPGFVEWGKECLAKADLKSSVYTSRDNYLETPDDGRSEDHLLGNTSAEIQRGQQ 1265
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BLAST of mRNA_Ecto-sp9_F_contig11795.1480.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH42_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 8.270e-14
Identity = 37/50 (74.00%), Postives = 41/50 (82.00%), Query Frame = -1 
Query:  298 TFFSRARFGPRLLEHVLGADSSHGAVQRTLDHRHSFFQNARNLRKHVAAK 447
            TFFS ARF  RLL+H LGADS H AV+RTL+H HSFFQNARNL  HVA+K
Sbjct:   28 TFFSHARFDARLLKHELGADSGHSAVRRTLNHCHSFFQNARNLGTHVASK 77
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11795.1480.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7T3_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 3.010e-13
Identity = 45/122 (36.89%), Postives = 71/122 (58.20%), Query Frame = -2 
Query:    3 RSSRTRGICENTSRLKPTAASETG*NFRKQRVPLVEDTPEEREETMDMFIGAMSANGCQHVMEAIEKVGPGFVDWGLDRLTEAKNASTLFEL--------DDIGGEEHLLGKTPEEVAEGEK 344
            R +R+  +  N    K T AS      R+ RV +V+ TPEERE+++D  + A++ NGC  +M+ ++K  PGFV+WG + L +AK  ST++          DD   E++L GK PEE+  G++
Sbjct:  361 RLARSPSLMGNAPFSKLTRASV---KERRLRVIVVDQTPEEREKSIDTCMAAIAKNGCGRLMDTVKKHDPGFVEWGKEHLAKAKINSTIWSSREEFIEKPDDGRSEDNLEGKAPEEIKHGQR 479
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11795.1480.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6S7_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 2.070e-12
Identity = 34/67 (50.75%), Postives = 51/67 (76.12%), Query Frame = -2 
Query:    3 MFIGAMSANGCQHVMEAIEKVGPGFVDWGLDRLTEAKNASTLFELDDIGGEEHLLGKTPEEVAEGEK 203
            MF+ A+  NGC+ +MEAIE++ PG +D+ L+RL  A+ AST ++ + IGG+ HL G TP+EVAEG++
Sbjct:  573 MFMEALDVNGCRRIMEAIERIDPGIIDFLLERLGRAERASTTWDSNAIGGD-HLFGTTPDEVAEGKR 638
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11795.1480.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
Uncharacterized1.090e-4476.58protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized8.560e-4083.52protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.420e-1747.62protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
PHD-type2.440e-1737.68domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Uncharacterized8.270e-1474.00protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized3.010e-1336.89protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.070e-1250.75protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11795contigEcto-sp9_F_contig11795:1049..1549 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size501
Cds size438
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11795.1480.1prot_Ecto-sp9_F_contig11795.1480.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11795 1109..1546 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928437.0361538-UTR-Ecto-sp9_F_contig11795:1048..11081622928437.0361538-UTR-Ecto-sp9_F_contig11795:1048..1108Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11795 1049..1108 +
1692277870.8742943-UTR-Ecto-sp9_F_contig11795:1048..11081692277870.8742943-UTR-Ecto-sp9_F_contig11795:1048..1108Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11795 1049..1108 +
1622928437.0639815-UTR-Ecto-sp9_F_contig11795:1546..15491622928437.0639815-UTR-Ecto-sp9_F_contig11795:1546..1549Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11795 1547..1549 +
1692277870.898469-UTR-Ecto-sp9_F_contig11795:1546..15491692277870.898469-UTR-Ecto-sp9_F_contig11795:1546..1549Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11795 1547..1549 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928437.0499837-CDS-Ecto-sp9_F_contig11795:1108..15461622928437.0499837-CDS-Ecto-sp9_F_contig11795:1108..1546Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11795 1109..1546 +
1692277870.887503-CDS-Ecto-sp9_F_contig11795:1108..15461692277870.887503-CDS-Ecto-sp9_F_contig11795:1108..1546Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11795 1109..1546 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11795.1480.1

>prot_Ecto-sp9_F_contig11795.1480.1 ID=prot_Ecto-sp9_F_contig11795.1480.1|Name=mRNA_Ecto-sp9_F_contig11795.1480.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=146bp
MSSNSKSVEAFFASVRRSRPQSTKPGPTFSMASITCWHPLADMAPINMSM
VSSLSSGVSSTNGTLCLRKFYPVSDAAVGFSRDVFSQIPRVLEERMAVIQ
GPLHRTVAAVGTQYVLEKTGAKPCAAEERLCLTSEGQPAHTWPRP*
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mRNA from alignment at Ecto-sp9_F_contig11795:1049..1549+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11795.1480.1 ID=mRNA_Ecto-sp9_F_contig11795.1480.1|Name=mRNA_Ecto-sp9_F_contig11795.1480.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=501bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11795:1049..1549+ (Ectocarpus species9 EcSCA_722f female)
CTCTTCTCACCCTCTGCGACTTCCTCTGGCGTTTTACCGAGGAGGTGCTC
TTCTCCACCGATGTCGTCCAATTCGAAAAGCGTGGAAGCGTTCTTCGCTT
CCGTGAGACGGTCCAGGCCCCAGTCGACGAAACCGGGGCCGACTTTCTCA
ATGGCTTCCATCACGTGTTGGCACCCGTTGGCGGACATGGCCCCGATAAA
CATGTCCATGGTTTCCTCCCTCTCCTCTGGTGTGTCCTCCACCAATGGGA
CCCTCTGTTTACGGAAGTTTTATCCCGTCTCCGACGCCGCCGTTGGTTTT
AGCCGCGACGTGTTTTCGCAGATTCCTCGCGTTCTGGAAGAACGAATGGC
GGTGATCCAGGGTCCTCTGCACCGCACCGTGGCTGCTGTCGGCACCCAGT
ACGTGCTCGAGAAGACGGGGGCCAAACCTTGCGCGGCTGAAGAACGTTTG
TGTCTAACGAGTGAAGGCCAACCCGCCCATACTTGGCCGCGTCCCTGATC
C
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11795:1049..1549+

>mRNA_Ecto-sp9_F_contig11795.1480.1 ID=mRNA_Ecto-sp9_F_contig11795.1480.1|Name=mRNA_Ecto-sp9_F_contig11795.1480.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=876bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11795:1049..1549+ (Ectocarpus species9 EcSCA_722f female)
ATGTCGTCCAATTCGAAAAGCGTGGAAGCGTTCTTCGCTTCCGTGAGACG
GTCCAGGCCCCAGTCGACGAAACCGGGGCCGACTTTCTCAATGGCTTCCA
TCACGTGTTGGCACCCGTTGGCGGACATGGCCCCGATAAACATGTCCATG
GTTTCCTCCCTCTCCTCTGGTGTGTCCTCCACCAATGGGACCCTCTGTTT
ACGGAAGTTTTATCCCGTCTCCGACGCCGCCGTTGGTTTTAGCCGCGACG
TGTTTTCGCAGATTCCTCGCGTTCTGGAAGAACGAATGGCGGTGATCCAG
GGTCCTCTGCACCGCACCGTGGCTGCTGTCGGCACCCAGTACGTGCTCGA
GAAGACGGGGGCCAAACCTTGCGCGGCTGAAGAACGTTTGTGTCTAACGA
GTGAAGGCCAACCCGCCCATACTTGGCCGCGTCCCTGAATGTCGTCCAAT
TCGAAAAGCGTGGAAGCGTTCTTCGCTTCCGTGAGACGGTCCAGGCCCCA
GTCGACGAAACCGGGGCCGACTTTCTCAATGGCTTCCATCACGTGTTGGC
ACCCGTTGGCGGACATGGCCCCGATAAACATGTCCATGGTTTCCTCCCTC
TCCTCTGGTGTGTCCTCCACCAATGGGACCCTCTGTTTACGGAAGTTTTA
TCCCGTCTCCGACGCCGCCGTTGGTTTTAGCCGCGACGTGTTTTCGCAGA
TTCCTCGCGTTCTGGAAGAACGAATGGCGGTGATCCAGGGTCCTCTGCAC
CGCACCGTGGCTGCTGTCGGCACCCAGTACGTGCTCGAGAAGACGGGGGC
CAAACCTTGCGCGGCTGAAGAACGTTTGTGTCTAACGAGTGAAGGCCAAC
CCGCCCATACTTGGCCGCGTCCCTGA
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