mRNA_Ecto-sp9_F_contig11795.1479.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11795.1479.1
Unique NamemRNA_Ecto-sp9_F_contig11795.1479.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig11795.1479.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2A3_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 1.860e-26
Identity = 60/85 (70.59%), Postives = 64/85 (75.29%), Query Frame = 2 
Query:    2 LDELAKDQRTSKT------------NVTDIYNARHSDPVSVTKKFKEGEVSFNGGIRRMLDERRLRLSGGSDTPSDVSSTTEEDL 220
            LDELAK+   +K             NVTDIYNAR SDPVS TKK KEGEVSF GGIRRMLDERR RLSGGSDTPSD+SSTT+EDL
Sbjct:  832 LDELAKETSGAKNVTLFPLTPHPPQNVTDIYNARRSDPVSATKKCKEGEVSFKGGIRRMLDERRGRLSGGSDTPSDISSTTDEDL 916
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BLAST of mRNA_Ecto-sp9_F_contig11795.1479.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH42_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 2.050e-14
Identity = 44/72 (61.11%), Postives = 50/72 (69.44%), Query Frame = 2 
Query:    2 LDELAKDQRTSKTNVTDIYNARHSDPVSVTKKFKEGEVSFNGGIRRMLDERRLRLSGGSDTPSDVSSTTEED 217
            L ELA D  T+KT   + +      PVS+TK  KEGEVS N  IRRMLDER  RLSGGS+TPSD SSTT+ED
Sbjct:  251 LYELANDHWTTKTLQRETFR-----PVSMTKMSKEGEVSSNRDIRRMLDERPRRLSGGSNTPSDASSTTDED 317
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BLAST of mRNA_Ecto-sp9_F_contig11795.1479.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKS3_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 9.310e-13
Identity = 31/39 (79.49%), Postives = 34/39 (87.18%), Query Frame = 2 
Query:  104 EGEVSFNGGIRRMLDERRLRLSGGSDTPSDVSSTTEEDL 220
            EGEVSF+GGIRR LDERR RL GGSD PSD SSTT++DL
Sbjct:    2 EGEVSFSGGIRRKLDERRRRLRGGSDNPSDASSTTDQDL 40
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11795.1479.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ26_ECTSI)

HSP 1 Score: 49.7 bits (117), Expect = 2.850e-5
Identity = 24/27 (88.89%), Postives = 25/27 (92.59%), Query Frame = 2 
Query:  140 MLDERRLRLSGGSDTPSDVSSTTEEDL 220
            MLDERRLRLSGGSDT SD SSTT+EDL
Sbjct:    1 MLDERRLRLSGGSDTSSDASSTTDEDL 27
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11795.1479.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Uncharacterized1.860e-2670.59protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.050e-1461.11protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized9.310e-1379.49protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized2.850e-588.89protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11795contigEcto-sp9_F_contig11795:138..517 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size261
Cds size114
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11795.1479.1prot_Ecto-sp9_F_contig11795.1479.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11795 146..259 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928437.1028867-UTR-Ecto-sp9_F_contig11795:137..1451622928437.1028867-UTR-Ecto-sp9_F_contig11795:137..145Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11795 138..145 -
1692277870.9067469-UTR-Ecto-sp9_F_contig11795:137..1451692277870.9067469-UTR-Ecto-sp9_F_contig11795:137..145Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11795 138..145 -
1622928437.1346593-UTR-Ecto-sp9_F_contig11795:259..3581622928437.1346593-UTR-Ecto-sp9_F_contig11795:259..358Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11795 260..358 -
1692277870.9268408-UTR-Ecto-sp9_F_contig11795:259..3581692277870.9268408-UTR-Ecto-sp9_F_contig11795:259..358Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11795 260..358 -
1622928437.1506681-UTR-Ecto-sp9_F_contig11795:477..5171622928437.1506681-UTR-Ecto-sp9_F_contig11795:477..517Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11795 478..517 -
1692277870.938236-UTR-Ecto-sp9_F_contig11795:477..5171692277870.938236-UTR-Ecto-sp9_F_contig11795:477..517Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11795 478..517 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928437.1186032-CDS-Ecto-sp9_F_contig11795:145..2591622928437.1186032-CDS-Ecto-sp9_F_contig11795:145..259Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11795 146..259 -
1692277870.9142911-CDS-Ecto-sp9_F_contig11795:145..2591692277870.9142911-CDS-Ecto-sp9_F_contig11795:145..259Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11795 146..259 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11795.1479.1

>prot_Ecto-sp9_F_contig11795.1479.1 ID=prot_Ecto-sp9_F_contig11795.1479.1|Name=mRNA_Ecto-sp9_F_contig11795.1479.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=38bp
MLDERRLRLSGGSDTPSDVSSTTEEDLTCGSSEWRRS*
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mRNA from alignment at Ecto-sp9_F_contig11795:138..517-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11795.1479.1 ID=mRNA_Ecto-sp9_F_contig11795.1479.1|Name=mRNA_Ecto-sp9_F_contig11795.1479.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=380bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11795:138..517- (Ectocarpus species9 EcSCA_722f female)
CCTCGATGAGCTAGCTAAAGACCAGAGGACCTCGAAAACGGTAAGTCAGT
TATTCGACTTTACAATTTGTGAGCATGTGGTCGTTTTCGTATTGTTTGCT
AGGAACTTTGGGAGCTAAAAACGCCACACTTCCCCTGTTTTATACTACAT
CCACCTCAGAACGTCACCGACATCTACAACGCGAGACACTCCGACCCGGT
TAGCGTGACAAAGAAGTTCAAGGAGGGGGAAGTGTCTTTCAACGGGGGCA
TCAGGAGAATGCTGGACGAGAGACGTCTCCGGCTCAGCGGGGGATCGGAC
ACCCCCTCGGATGTCAGCAGCACGACCGAGGAAGACCTGACGTGCGGTTC
ATCCGAGTGGAGAAGGAGCTGAAGTTGAAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11795:138..517-

>mRNA_Ecto-sp9_F_contig11795.1479.1 ID=mRNA_Ecto-sp9_F_contig11795.1479.1|Name=mRNA_Ecto-sp9_F_contig11795.1479.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=228bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11795:138..517- (Ectocarpus species9 EcSCA_722f female)
ATGCTGGACGAGAGACGTCTCCGGCTCAGCGGGGGATCGGACACCCCCTC
GGATGTCAGCAGCACGACCGAGGAAGACCTGACGTGCGGTTCATCCGAGT
GGAGAAGGAGCTGAATGCTGGACGAGAGACGTCTCCGGCTCAGCGGGGGA
TCGGACACCCCCTCGGATGTCAGCAGCACGACCGAGGAAGACCTGACGTG
CGGTTCATCCGAGTGGAGAAGGAGCTGA
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