mRNA_Ecto-sp9_F_contig11792.1478.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11792.1478.1
Unique NamemRNA_Ecto-sp9_F_contig11792.1478.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig11792.1478.1 vs.
Match: Pentatricopeptide (repeat-containing protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK79_ECTSI)

HSP 1 Score: 342 bits (876), Expect = 3.840e-113
Identity = 171/180 (95.00%), Postives = 175/180 (97.22%), Query Frame = 1 
Query:   67 MVSKGLEPNVLTLSHLAMAQAWGSSNDMYRTLAEMDERGWTPTRAAHLSAISFMWQRKDPEGVLQMIERMLDESYQPTEAAFAMALMSAGRLGRADLAKVLFEWRSASGLEPKQEIYSSMMLAHSKADLHEESLAYWRQLVCLDGVGGVAIDPATCRSALRSAIVSDQWDEVDTIVGMLR 606
            MVSKGLEP+VLTLSHLAMAQAWGSSNDMYRTLAEMDERGWTPTRAAHLSAI+FMWQRKD EGVLQMIERML++SYQPTEAAFAMALMSAGRLGRADLAKVLFEWRS SGLEPKQEIYSSMMLAHSKADLHEESLAYWRQLVCLDGVGGVAID  TCRSALRSAIVSD WDEVDTIVGMLR
Sbjct:    1 MVSKGLEPDVLTLSHLAMAQAWGSSNDMYRTLAEMDERGWTPTRAAHLSAIAFMWQRKDTEGVLQMIERMLEKSYQPTEAAFAMALMSAGRLGRADLAKVLFEWRSESGLEPKQEIYSSMMLAHSKADLHEESLAYWRQLVCLDGVGGVAIDLETCRSALRSAIVSDHWDEVDTIVGMLR 180
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BLAST of mRNA_Ecto-sp9_F_contig11792.1478.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG81_ECTSI)

HSP 1 Score: 152 bits (384), Expect = 2.470e-39
Identity = 80/182 (43.96%), Postives = 112/182 (61.54%), Query Frame = 1 
Query:   58 YREMVSKGLEPNVLTLSHLAMAQAWGSSNDMYRTLAEMDERGWTPTRAAHLSAISFMWQRKDPEGVLQMIERMLDESYQPTEAAFAMALMSAGRLGRADLAKVLFEWRSASGLEPKQEIYSSMMLAHSKADLHEESLAYWRQLVCLDGVGGVAIDPATCRSALRSAIVSDQWDEVDTIVGML 603
            + EM+S+G+EPN  T SH+ +A + G  + MYR + EM  +GW  +R A L  I+ M  R+D +GVL  I RM +ES  PTEAAF  A  +A  LG+ + AK LF  R+ +GL P + +Y  MML   KA   EE L YWRQLVC+ G+ GV I P T   A++  +V D  DE++ ++ M+
Sbjct:  215 HEEMLSRGVEPNQRTASHMIVAHSRGCHDTMYRAVEEMYAKGWQGSRTACLGMIAVMGFRRDYDGVLYTIRRMREESKLPTEAAFVWAYRAAEHLGQVETAKQLFHHRAEAGLPPAEYVYVKMMLILMKAGKAEECLEYWRQLVCVHGLNGVVIHPETYNLAIKCTMVVDNQDEMEAVLAMM 396
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BLAST of mRNA_Ecto-sp9_F_contig11792.1478.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCB7_9PHAE)

HSP 1 Score: 151 bits (381), Expect = 3.840e-39
Identity = 78/196 (39.80%), Postives = 116/196 (59.18%), Query Frame = 1 
Query:   19 YAQARSLPKVERAYREMVSKGLEPNVLTLSHLAMAQAWGSSNDMYRTLAEMDERGWTPTRAAHLSAISFMWQRKDPEGVLQMIERMLDESYQPTEAAFAMALMSAGRLGRADLAKVLFEWRSASGLEPKQEIYSSMMLAHSKADLHEESLAYWRQLVCLDGVGGVAIDPATCRSALRSAIVSDQWDEVDTIVGMLR 606
            Y+Q R   +  R   EM  KGL+P   TLS + +A +WGS  DM R   EM E+GWTPTR A+ + I  +W+ +D EG+L     ML+     TEA   +A+ +A  +G A  A+ L      +   P++++Y  +M+A   A  HEE LA WR+LV LDG+G V +D  T   AL SA+ +++WDE++TI+ M++
Sbjct:  192 YSQVRKEGEAVRLLEEMAVKGLQPERKTLSSMIVAHSWGSIEDMRRVSKEMQEKGWTPTRRANSAMIGALWRAEDWEGILDTTRAMLEAGQTMTEAGLVVAIKAATNVGNAGFARELLLIHGKNKHRPQEQLYVLVMVALRNASQHEECLACWRELVLLDGLGDVKLDGRTYNLALMSAVKTERWDEMETILDMMQ 387
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11792.1478.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYF7_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 4.340e-38
Identity = 79/182 (43.41%), Postives = 110/182 (60.44%), Query Frame = 1 
Query:   58 YREMVSKGLEPNVLTLSHLAMAQAWGSSNDMYRTLAEMDERGWTPTRAAHLSAISFMWQRKDPEGVLQMIERMLDESYQPTEAAFAMALMSAGRLGRADLAKVLFEWRSASGLEPKQEIYSSMMLAHSKADLHEESLAYWRQLVCLDGVGGVAIDPATCRSALRSAIVSDQWDEVDTIVGML 603
            Y EM+S+G+EPN  T SH+ +A + G  + MYR + EM  +GW  +R A L  I+ M  R+D +GVL  I RM +ES  PTEAAF  A  +A  LG+ + AK LF+ R+ +GL P + +Y  MM    KA   EE L YWRQLVC+ G  GV I P T   A++  +V    DE++ ++ M+
Sbjct:  215 YEEMLSRGVEPNQRTASHMIVAHSRGCHDAMYRAVEEMYAKGWQGSRVACLGMIAVMGIRRDYDGVLYTIRRMREESKLPTEAAFVWAYRAAENLGQVETAKQLFQHRAEAGLPPAEYVYVKMMSILMKAGKAEECLEYWRQLVCVHGFNGVVIHPETYNLAIKCTMVVGNQDEMEAVLAMM 396
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11792.1478.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Pentatricopeptide3.840e-11395.00repeat-containing protein, putative n=1 Tax=Ectoca... [more]
Uncharacterized2.470e-3943.96protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized3.840e-3939.80protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized4.340e-3843.41protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11792contigEcto-sp9_F_contig11792:269..3619 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score344.4
Seed ortholog evalue3.7e-92
Seed eggNOG ortholog2880.D7FK79
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size606
Cds size606
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11792.1478.1prot_Ecto-sp9_F_contig11792.1478.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11792 269..3619 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928436.9417114-CDS-Ecto-sp9_F_contig11792:268..4511622928436.9417114-CDS-Ecto-sp9_F_contig11792:268..451Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11792 269..451 -
1692277870.8344722-CDS-Ecto-sp9_F_contig11792:268..4511692277870.8344722-CDS-Ecto-sp9_F_contig11792:268..451Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11792 269..451 -
1622928436.961957-CDS-Ecto-sp9_F_contig11792:1427..15891622928436.961957-CDS-Ecto-sp9_F_contig11792:1427..1589Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11792 1428..1589 -
1692277870.8460777-CDS-Ecto-sp9_F_contig11792:1427..15891692277870.8460777-CDS-Ecto-sp9_F_contig11792:1427..1589Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11792 1428..1589 -
1622928436.9763968-CDS-Ecto-sp9_F_contig11792:2609..27151622928436.9763968-CDS-Ecto-sp9_F_contig11792:2609..2715Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11792 2610..2715 -
1692277870.8557496-CDS-Ecto-sp9_F_contig11792:2609..27151692277870.8557496-CDS-Ecto-sp9_F_contig11792:2609..2715Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11792 2610..2715 -
1622928436.9911633-CDS-Ecto-sp9_F_contig11792:3464..36191622928436.9911633-CDS-Ecto-sp9_F_contig11792:3464..3619Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11792 3465..3619 -
1692277870.8650165-CDS-Ecto-sp9_F_contig11792:3464..36191692277870.8650165-CDS-Ecto-sp9_F_contig11792:3464..3619Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11792 3465..3619 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11792.1478.1

>prot_Ecto-sp9_F_contig11792.1478.1 ID=prot_Ecto-sp9_F_contig11792.1478.1|Name=mRNA_Ecto-sp9_F_contig11792.1478.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=202bp
MPNSIRYAQARSLPKVERAYREMVSKGLEPNVLTLSHLAMAQAWGSSNDM
YRTLAEMDERGWTPTRAAHLSAISFMWQRKDPEGVLQMIERMLDESYQPT
EAAFAMALMSAGRLGRADLAKVLFEWRSASGLEPKQEIYSSMMLAHSKAD
LHEESLAYWRQLVCLDGVGGVAIDPATCRSALRSAIVSDQWDEVDTIVGM
LR
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mRNA from alignment at Ecto-sp9_F_contig11792:269..3619-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11792.1478.1 ID=mRNA_Ecto-sp9_F_contig11792.1478.1|Name=mRNA_Ecto-sp9_F_contig11792.1478.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3351bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11792:269..3619- (Ectocarpus species9 EcSCA_722f female)
ATGCCGAATTCCATCAGGTACGCGCAGGCGCGGTCTTTGCCCAAGGTGGA
GCGGGCGTACCGTGAAATGGTTTCGAAAGGGTTGGAGCCTAACGTGTTGA
CGCTGTCTCACTTGGCTATGGCCCAAGCTTGGGGGTCTTCGAACGACATG
TACAGGTCAGTGCCGCCGCGGACACCATCGCTGCTGCCACGGCTGTGGTG
CTGCCAACGTTTTGTTGTTGTTTTTGTTTTCGTTGTTGTTGTTGGTTGTT
GTTGCTGTTGTTGTTGTTGTTGTTGTTGTGGTTGTTGTTGTTGTTGTGTT
GTTGTTGGTTGTTGCTCCTGCTGCTGTTGTAGTTGGTGGTGGTGGTGGTA
GTGATGGTGCTGCCGTCTATGTACATCATGCAAGAACCCATTAACAGACT
CCCGTCGTAACCCAACACAACGTACCTCGTGCAAGTGTGTGTGTGTGTGT
TTTTCTCAGGAGTGAGAAGCACCTCCAACAGATGAACGCTGGTTGATTGA
TGTCTAGCGACTTAAGAAACCATTGTTTGCGTGTTCGTGTGTTGTGTACG
ACGCAACGTGTGTGTGTGTCCGTCCCATCTATTCCAGTCTACACACATTT
CCGGTGTATGTATGTGCTTGCTGTATCAACCGGGGGTGATGTTATGGAAA
TGGGATGGAATGGGATGGGATGGGATGGTTGCTGGACCTGGCACAACACT
TGTGAACAACCTTTACGATGGGACGGGATTGTTGTTGGACCTGGCACAAC
ACATGCGGAGATGGACGAGAGGGGGAACACTTTTTAACAACCAATACCAT
GGGACGGGAATCAATATCATCTGATGGGATGGTTGTTAGCTTGGCACAAC
ACTCGTTAATAACCAATGTGATGGGACGGGATGACGGTTGTTGGAACCTC
ACAGAACACTTGCGGAGATGGACGAGAGGGGCTGGACTCCGACAAGGGCG
GCCCACCTGAGCGCGATTTCCTTCATGTGGCAGAGGAAGGACCCGGAGGG
CGTACTGCAGGTGATGGGTGGCGTTGTTGTCGGAAGTTGCTGAAAGGCTG
TGTGTGTTTTTTTTTCTTGTGGAAGCTACTGAACTATGTGATAGGCCGCT
TTTGTGGTCTCTGTGGAAGCTGCTGAGCGATGTAAAAGGCTGCGTTTTTT
TGCTTGCATACTGTAGGTGATGGAGGATGGCTTTGTTGGTGGAAGTTGCT
GAAGTACTATCTAATAGGCTGTGTGTGTGTTTTTTTTTTTTTCTTCTTGT
GAAAGCTGCTGAACTATGTGGTACGCCGTTTTTTTTGTCTCTGTGGAAGC
TACTGAACCTGATATGTGTTAACTGCTTTTTTTTTTGTTTCTGTGGGAGC
TGCCGAACTATGCAGAAGGCTGTGTTTTTTCTGTGGTTTTGTGAATTCGG
AGAGGCTATCGATTGCTGTATAGGGCCTTGTATTCGCAAGCATCACCCCT
TTCATGTTTGAGGGCGCTTGCTCCGGTTTTCTAGAAGGCGAGGCTTTTCC
TGATGGGACGCAGCCCACGGACGGTGTTCCTTCTCCCCGTTCCAGTACAA
TAGCTCTTGGGGTCTCGCTGTGCTTGATCTTGTTCTTCCTGCTACCCTCT
CCCCTTCTTGTCGTCCCTCCCTGCTGCTTCTGCTCCTCCTCATCTCATGT
TTGATTGTTCTTGCTTCCGCCTCCCCCTCTTGTTATTGTCGTTCTTCCTC
CTTTTTTTTTGTTCCTTCTTCCGTCTTTTACGTTCTTAGGTATGCATGTT
GCCAGTACGACACAGCATTTATTTCGAGTTGTCCTTATGCTCCCTCCCCT
CTTGATGTTGCTCCTTCTGCTCACTACTCCCTCAAATTTGTTCTTCGTAT
TTCCTCCTCCTCCACCTCCTCCGCTTTCCCCGGCCTCGTCAGTAGATGAT
ACAGCGCGCGCTTCTTGTAGTTCCTCCTGCTTCCTCCCCTCTTGCTGCTG
TCCCTCCTGCTCACTCCCTACCGTGTTGTTCCTATTTCCTCCTCCTCGTC
CTTGCCTTTTTTACCCCGCCTCGTCAGTAGATGATAGAGCGCATGCTTGA
TGAGAGCTACCAGCCTACGGAAGCCGCGTTTGCGATGGCTCTCATGTCTG
CCGGGCGCTTGGGCAGGGCGGACTTGGCCAAGGTGCTGTTCGAGTGGCGC
AGCGCGTCGGGGCTGGAGCCGAAGCAGGAGATTTACTCCAGCGTGAGTTG
TTGTTGGTGTTACTTGTTGTTGTTGTTGGGTGGTGGTGATGGTGGTAGTG
GTGGTGGTGGTGTTGTTGTTATGTAGTTGTTGTTATGTAGTTGTTGTTGT
TGTTGTTGCTGTTGCTGTTGTTGTTGTTGTTGTTGTTGCTGTTGCTGTTG
TTGTTGGTGTTACTTGTTGTTGTTGGGTGTTGGTGATGGTGGTGGTGGTG
GTGGTGGTTGTGTTGTTGTTATGTAGTTGTCGTTGTTGTTGTTGTTGTTG
TTGTTGTTGTTGTTGTTGTTGCTGCTGTCCCTTTGCTATGGTTGCCATTG
CTGCTGTAGCTGTGGTTGTTCTTGTTGGCGCCAATGGTGGAGTTGAGCAT
TTGCCATGGCGGTTGCTGCCGTTTTTACACGATGCTGCCTGCGCGTGAGT
TTGCGCGGCTGGGGGCTATCTTGGGACGGGGACATTGTCTTGGCCCATTT
CAAGGAACACGCACCAGCGCATCGGTCGCTTATTTGTGAATGACGATGAT
GTTGAGCCGATTGAAGTGTTGCTGTTGCTGTTCTTTTTCACACATTGCCT
TTCGCATACCCCACCAAACAACCGGACAATATTCCAACCTTACGTCTGCT
CTTGACGCAATTGTAGCGACACCAAAACCCTTTCCAGTCGCTCGCGACAC
TTCACCTTCCGTGTGTTGTTTTTATTGCTCTTCCTGACACACAACAATGA
TTCCATCTCTATGTATTCAAGAATCTGCGATCAAGTTGACGATGAATTTC
GTAGGGCTACAAGACCTACCTGTCTTTCTGCTCGTCCCCGGAGCAACGTA
CAGTGATTTGGCGTCCCCAAACCTGAGTACAAAAAACTACTCACCCAAAA
TGAAAACAAGAGACAAGAGCACCCAACCCACTCATCATTGCGTCCCCAAA
ACTTTATCTTCTCCCCTCTGGGTCAACAGGCTCATCCAAACTTCTTCCTT
TTTTGCTAATCCTTACAGATGATGCTGGCCCATTCAAAAGCGGACCTGCA
CGAGGAGAGCCTGGCGTACTGGCGGCAGCTGGTGTGCCTCGACGGGGTGG
GGGGGGTAGCCATCGACCCCGCGACGTGCCGGAGCGCCCTGAGGTCAGCG
ATTGTGAGCGATCAGTGGGACGAGGTGGACACCATCGTGGGCATGCTGAG
G
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11792:269..3619-

>mRNA_Ecto-sp9_F_contig11792.1478.1 ID=mRNA_Ecto-sp9_F_contig11792.1478.1|Name=mRNA_Ecto-sp9_F_contig11792.1478.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1212bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11792:269..3619- (Ectocarpus species9 EcSCA_722f female)
ATGCCGAATTCCATCAGGTACGCGCAGGCGCGGTCTTTGCCCAAGGTGGA
GCGGGCGTACCGTGAAATGGTTTCGAAAGGGTTGGAGCCTAACGTGTTGA
CGCTGTCTCACTTGGCTATGGCCCAAGCTTGGGGGTCTTCGAACGACATG
TACAGATGCCGAATTCCATCAGGTACGCGCAGGCGCGGTCTTTGCCCAAG
GTGGAGCGGGCGTACCGTGAAATGGTTTCGAAAGGGTTGGAGCCTAACGT
GTTGACGCTGTCTCACTTGGCTATGGCCCAAGCTTGGGGGTCTTCGAACG
ACATGTACAGAACACTTGCGGAGATGGACGAGAGGGGCTGGACTCCGACA
AGGGCGGCCCACCTGAGCGCGATTTCCTTCATGTGGCAGAGGAAGGACCC
GGAGGGCGTACTGCAGAACACTTGCGGAGATGGACGAGAGGGGCTGGACT
CCGACAAGGGCGGCCCACCTGAGCGCGATTTCCTTCATGTGGCAGAGGAA
GGACCCGGAGGGCGTACTGCAGATGATAGAGCGCATGCTTGATGAGAGCT
ACCAGCCTACGGAAGCCGCGTTTGCGATGGCTCTCATGTCTGCCGGGCGC
TTGGGCAGGGCGGACTTGGCCAAGGTGCTGTTCGAGTGGCGCAGCGCGTC
GGGGCTGGAGCCGAAGCAGGAGATTTACTCCAGCATGATAGAGCGCATGC
TTGATGAGAGCTACCAGCCTACGGAAGCCGCGTTTGCGATGGCTCTCATG
TCTGCCGGGCGCTTGGGCAGGGCGGACTTGGCCAAGGTGCTGTTCGAGTG
GCGCAGCGCGTCGGGGCTGGAGCCGAAGCAGGAGATTTACTCCAGCATGA
TGCTGGCCCATTCAAAAGCGGACCTGCACGAGGAGAGCCTGGCGTACTGG
CGGCAGCTGGTGTGCCTCGACGGGGTGGGGGGGGTAGCCATCGACCCCGC
GACGTGCCGGAGCGCCCTGAGGTCAGCGATTGTGAGCGATCAGTGGGACG
AGGTGGACACCATCGTGGGCATGCTGAGGATGATGCTGGCCCATTCAAAA
GCGGACCTGCACGAGGAGAGCCTGGCGTACTGGCGGCAGCTGGTGTGCCT
CGACGGGGTGGGGGGGGTAGCCATCGACCCCGCGACGTGCCGGAGCGCCC
TGAGGTCAGCGATTGTGAGCGATCAGTGGGACGAGGTGGACACCATCGTG
GGCATGCTGAGG
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