mRNA_Ecto-sp9_F_contig11785.1473.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11785.1473.1
Unique NamemRNA_Ecto-sp9_F_contig11785.1473.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11785.1473.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11785contigEcto-sp9_F_contig11785:2286..2619 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size335
Cds size333
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928436.5343812-CDS-Ecto-sp9_F_contig11785:2285..26181622928436.5343812-CDS-Ecto-sp9_F_contig11785:2285..2618Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11785 2286..2618 +
1692277870.638601-CDS-Ecto-sp9_F_contig11785:2285..26181692277870.638601-CDS-Ecto-sp9_F_contig11785:2285..2618Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11785 2286..2618 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11785.1473.1prot_Ecto-sp9_F_contig11785.1473.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11785 2286..2618 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11785.1473.1

>prot_Ecto-sp9_F_contig11785.1473.1 ID=prot_Ecto-sp9_F_contig11785.1473.1|Name=mRNA_Ecto-sp9_F_contig11785.1473.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=111bp
VHWRPAAIVQCCCCRCMFWVRLWLPVANSIIRCCKCLRLTIAPAVVAKKS
FFRCPQAPPPHFAYSAVCPRHVSWVRVRCLQLCHQYLRPPLTHSFILSRV
PLMWRSSPQPV
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mRNA from alignment at Ecto-sp9_F_contig11785:2286..2619+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11785.1473.1 ID=mRNA_Ecto-sp9_F_contig11785.1473.1|Name=mRNA_Ecto-sp9_F_contig11785.1473.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=334bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11785:2286..2619+ (Ectocarpus species9 EcSCA_722f female)
GTTCATTGGCGTCCGGCCGCGATCGTGCAATGTTGTTGCTGCCGTTGCAT
GTTTTGGGTTAGGTTATGGTTACCTGTTGCCAACAGTATCATTCGTTGTT
GCAAATGCTTACGGTTGACAATTGCACCAGCAGTAGTAGCGAAGAAGTCT
TTCTTCCGTTGCCCACAAGCCCCTCCTCCTCACTTTGCGTATAGTGCTGT
GTGTCCAAGACACGTATCTTGGGTGCGTGTGCGGTGCCTACAGTTGTGTC
ACCAATATCTAAGGCCCCCACTCACTCACTCCTTCATTCTGAGCAGGGTA
CCGTTGATGTGGCGAAGCTCGCCGCAACCTGTGG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11785:2286..2619+

>mRNA_Ecto-sp9_F_contig11785.1473.1 ID=mRNA_Ecto-sp9_F_contig11785.1473.1|Name=mRNA_Ecto-sp9_F_contig11785.1473.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=666bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11785:2286..2619+ (Ectocarpus species9 EcSCA_722f female)
GTTCATTGGCGTCCGGCCGCGATCGTGCAATGTTGTTGCTGCCGTTGCAT
GTTTTGGGTTAGGTTATGGTTACCTGTTGCCAACAGTATCATTCGTTGTT
GCAAATGCTTACGGTTGACAATTGCACCAGCAGTAGTAGCGAAGAAGTCT
TTCTTCCGTTGCCCACAAGCCCCTCCTCCTCACTTTGCGTATAGTGCTGT
GTGTCCAAGACACGTATCTTGGGTGCGTGTGCGGTGCCTACAGTTGTGTC
ACCAATATCTAAGGCCCCCACTCACTCACTCCTTCATTCTGAGCAGGGTA
CCGTTGATGTGGCGAAGCTCGCCGCAACCTGTGGTTCATTGGCGTCCGGC
CGCGATCGTGCAATGTTGTTGCTGCCGTTGCATGTTTTGGGTTAGGTTAT
GGTTACCTGTTGCCAACAGTATCATTCGTTGTTGCAAATGCTTACGGTTG
ACAATTGCACCAGCAGTAGTAGCGAAGAAGTCTTTCTTCCGTTGCCCACA
AGCCCCTCCTCCTCACTTTGCGTATAGTGCTGTGTGTCCAAGACACGTAT
CTTGGGTGCGTGTGCGGTGCCTACAGTTGTGTCACCAATATCTAAGGCCC
CCACTCACTCACTCCTTCATTCTGAGCAGGGTACCGTTGATGTGGCGAAG
CTCGCCGCAACCTGTG
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