mRNA_Ecto-sp9_F_contig1176.1464.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1176.1464.1
Unique NamemRNA_Ecto-sp9_F_contig1176.1464.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig1176.1464.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLC2_ECTSI)

HSP 1 Score: 498 bits (1283), Expect = 8.290e-173
Identity = 243/251 (96.81%), Postives = 247/251 (98.41%), Query Frame = 2 
Query:  215 MRSRDATALTVLSVLGVCHSFQVLPISPCRPRHAPCPLLRPRCAQTVCKSAGKGED-GDGVDYSADPITAFLGKFLPKGEKSNPPQAKYLVFNVGEDAKRRGMAAGEMASALDEALRSNGWFVTGRVDASLFSEGFFFSDPQVSLTGVEKYAEGVAKLFNQEESRCDVISTEVDGEDIVVNWRLSGRINLPFNPPIKPYIVTTTFERDSDGLLSTQRDEFSIAGWDILLHAVFPGHPFGADPAPPVPPVAS 964
            MRSRDATALTVLSVLGVCHSFQV PISPCRPRHAPCPLLRPRCAQTVCKSAGK E+ GDGVDYSADPITAFLGKFLPKGEKSNPPQAK LVFNVGEDAKRRGMAAGEMASALDEALRSNGWFVTGR+D+SLFSEGFFFSDPQVSLTGV+KYAEGVAKLFNQEESRCDVISTEVDGEDIVVNWRLSGRINLPFNPPIKPYIVTTTFERDSDGLLSTQRDEFSIAGWDILLHAVFPGHPFGADPAPPVPPVAS
Sbjct:    1 MRSRDATALTVLSVLGVCHSFQVSPISPCRPRHAPCPLLRPRCAQTVCKSAGKDEEEGDGVDYSADPITAFLGKFLPKGEKSNPPQAKDLVFNVGEDAKRRGMAAGEMASALDEALRSNGWFVTGRIDSSLFSEGFFFSDPQVSLTGVDKYAEGVAKLFNQEESRCDVISTEVDGEDIVVNWRLSGRINLPFNPPIKPYIVTTTFERDSDGLLSTQRDEFSIAGWDILLHAVFPGHPFGADPAPPVPPVAS 251
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1176.1464.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBW5_9PHAE)

HSP 1 Score: 305 bits (781), Expect = 1.490e-98
Identity = 148/149 (99.33%), Postives = 149/149 (100.00%), Query Frame = 2 
Query:  518 MAAGEMASALDEALRSNGWFVTGRVDASLFSEGFFFSDPQVSLTGVEKYAEGVAKLFNQEESRCDVISTEVDGEDIVVNWRLSGRINLPFNPPIKPYIVTTTFERDSDGLLSTQRDEFSIAGWDILLHAVFPGHPFGADPAPPVPPVAS 964
            MAAGEMASALDEALRSNGWFVTGRVDASLFSEGFFFSDPQVSLTGV+KYAEGVAKLFNQEESRCDVISTEVDGEDIVVNWRLSGRINLPFNPPIKPYIVTTTFERDSDGLLSTQRDEFSIAGWDILLHAVFPGHPFGADPAPPVPPVAS
Sbjct:    1 MAAGEMASALDEALRSNGWFVTGRVDASLFSEGFFFSDPQVSLTGVDKYAEGVAKLFNQEESRCDVISTEVDGEDIVVNWRLSGRINLPFNPPIKPYIVTTTFERDSDGLLSTQRDEFSIAGWDILLHAVFPGHPFGADPAPPVPPVAS 149
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1176.1464.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383W0Z3_TETOB)

HSP 1 Score: 167 bits (423), Expect = 2.920e-44
Identity = 93/214 (43.46%), Postives = 125/214 (58.41%), Query Frame = 2 
Query:  320 CPLLRPRCAQTVCKSAGKGEDGDGVDYSADPITAFLGKFLPKGEKSNPPQAKYLVFNVGEDA-KRRGMAAGEMASALDEALRSNGWFVTGRVDASLFSEGFFFSDPQVSLTGVEKYAEGVAKLFNQEESRCDVISTEV--DGEDIVVNWRLSGRINLPFNPPIKPYIVTTTFERDSD-GLLSTQRDEFSIAGWDILLHAVFPGHPFGADPAPPV 949
            C    P+   T   S+    + +     +DP+  FLG+FLP         AK  +  +  DA K  G +  +MA  ++  L  + WFVTG VD  LFS+ F F D  V+ TG++ YA GV KLF+Q  S+ ++IS E   D + +VV WRL GR+NLPF P IKPY+VTTT   D D GL+ +Q DEFS+ GWD+LL ++  G  FGA PAPPV
Sbjct:   14 CQASSPKQPPTGSNSSSDSNEAEPAYAYSDPVNQFLGQFLPSNRA-----AKDELAGIDFDAPKLSGRSIQQMAELVEAGLSRSQWFVTGEVDPRLFSDSFAFKDESVATTGIKAYATGVRKLFDQATSKVELISVEARPDTQALVVVWRLEGRVNLPFKPKIKPYVVTTTLGLDPDSGLICSQLDEFSVPGWDLLL-SILLGEGFGAKPAPPV 221
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1176.1464.1 vs.
Match: Uncharacterized (protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250WW06_9CHLO)

HSP 1 Score: 164 bits (414), Expect = 1.470e-43
Identity = 85/184 (46.20%), Postives = 112/184 (60.87%), Query Frame = 2 
Query:  404 ADPITAFLGKFLPKGEKSNPPQAKYLVFNVGEDAKRRGMAAGEMASALDEALRSNGWFVTGRVDASLFSEGFFFSDPQVSLTGVEKYAEGVAKLFNQEESRCDVISTEVDGED--IVVNWRLSGRINLPFNPPIKPYIVTTTFERDSDGLLSTQRDEFSIAGWDILLHAVFPGHPFGADPAPPV 949
            +DP+  FLG FLP GE  +      + +      K  G+   ++A  ++  L  + WFVTG VD SLF++ F F D  V+  G+  YAEGV K+F+QE SR +V+S + D     IVV WRL G +NLPF P I PY+VTTTFE DSDGL+S+Q DEFS+ GW +L  A+  G   G  PA PV
Sbjct:   15 SDPVNGFLGNFLPSGESVSASSLDQIDWTT---PKATGLEIRQLADRIEAKLSMSEWFVTGMVDPSLFAKEFSFKDDSVATKGIRSYAEGVRKIFDQETSRAEVVSVDTDAAKGIIVVTWRLEGCVNLPFKPRITPYVVTTTFEVDSDGLISSQLDEFSVPGWRLLAGALL-GSWAGPTPALPV 194
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1176.1464.1 vs.
Match: Uncharacterized (protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PWC3_9CHLO)

HSP 1 Score: 160 bits (404), Expect = 2.350e-41
Identity = 90/200 (45.00%), Postives = 117/200 (58.50%), Query Frame = 2 
Query:  359 KSAGKGEDGDGVDYSADPITAFLGKFLPKGEKSNPPQAKYLVFNVGEDAKRRGMAAGEMASALDEALRSNGWFVTGRVDASLFSEGFFFSDPQVSLTGVEKYAEGVAKLFNQEESRCDVISTEVDGED--IVVNWRLSGRINLPFNPPIKPYIVTTTFERD-SDGLLSTQRDEFSIAGWDILLHAVFPGHPFGADPAPPV 949
            + +   E      YS DP+  FLG+FLP    SN      LV    +  K  G +  EMA  ++  L  + WFVTG VD  LFS+ F F D  V+ TG++ YA GV KLF+Q  S+ ++++ E    D  IVV WRL GR+NLPF P IK Y+VTTT   D   GL+++Q DEFS+ GWD+LL  +  G  FGA PAPPV
Sbjct:   49 RGSSTSESEPAYAYS-DPVNQFLGQFLP----SNRAAKDELVGVDFDQPKLSGRSIQEMAQLVEAGLSKSQWFVTGEVDPRLFSDSFAFKDESVATTGIKAYATGVRKLFDQATSKVELVTVEPQPADQAIVVTWRLEGRVNLPFKPKIKAYVVTTTLGVDPGTGLINSQVDEFSVPGWDLLLSTLL-GEGFGAKPAPPV 242
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1176.1464.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZJJ4_9STRA)

HSP 1 Score: 152 bits (383), Expect = 9.490e-39
Identity = 83/185 (44.86%), Postives = 111/185 (60.00%), Query Frame = 2 
Query:  359 KSAGKGEDGDGVDYSADPITAFLGKFLPKGEKSNPPQAKYLVFNVGEDAKRRGMAAGEMASALDEALRSNGWFVTGRVDASLFSEGFFFSDPQVSLTGVEKYAEGVAKLFNQEESRCDVISTEVDGEDIVVNWRLSGRINLPFNPPIKPYIVTTTFERDSDGLLSTQRDEFSIAGWDILLHAVFP 913
            +S  +  +  G +   +P+T FLG+F+PK       QA  +   V  D  +  +  GE+  ALD  LR   WFVTG+V    FS+ F F DP VSLTG++ YAEGVA+LF  E++RC+VI+    GE+I V+WRLSG + +     IKPY+V TTF R  DGL+  Q D FSI GW ILL  + P
Sbjct:   61 RSVARVINAGGEEDYVNPVTEFLGRFIPK-------QAP-IELGVDWDQPKTPLPLGELVGALDRGLREREWFVTGKVLPEYFSDDFKFEDPDVSLTGIQNYAEGVARLFG-EDARCEVIACAPRGEEIAVDWRLSGSVRVGPGATIKPYVVHTTF-RVRDGLVVFQEDAFSIPGWQILLGVLLP 235
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1176.1464.1 vs.
Match: Uncharacterized (protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4I8F7_9ALVE)

HSP 1 Score: 147 bits (371), Expect = 1.600e-36
Identity = 98/252 (38.89%), Postives = 132/252 (52.38%), Query Frame = 2 
Query:  236 ALTVLSVLGVCHSFQVLPI-SPCRPRHAPCPL-LRPRCAQTV---------------CKSAGKGEDGDGV--DYSADPITAFLGKFLPKGEKSNPPQAKYLVFNVGED----AKRRGMAAGEMASALDEALRSNGWFVTGRVDASLFSEGFFFSDPQVSLTGVEKYAEGVAKLFNQEESRCDVISTEVDGED--IVVNWRLSGRINLPFNPPIKPYIVTTTFERD-SDGLLSTQRDEFSIAGWDILLHAVFP 913
            +L  LS + VC  F      +PC     P PL LR R A+++               C  A    +G+G   +   +P+T FLG F+ K       +       VGE     +KR+ M    +A  L++AL+ + WFVTGRVD S FSE F F DP V + G+E YA+GV K+F+QE SR +VI T V   +  I V WRL G++N+     IKPY+V T F  D   GL+ +Q D FSI  +DILL A FP
Sbjct:    2 SLHFLSCVLVCGLFSAQAFRTPCTSSRWPTPLRLRKRPAESLVEGLRAEGSNRTTRSCLRAASTSEGEGETSEEYVNPLTGFLGNFIQKKPVPESSERGNQNKPVGEIDFAVSKRKKMPLNRLAQELEKALQRSEWFVTGRVDPSFFSENFSFEDPDVKVKGIEDYAKGVNKIFDQETSRAEVIETTVKSANNTITVTWRLEGKVNVGPGLRIKPYLVYTDFGVDPKSGLIVSQLDRFSIPSYDILLSAFFP 253
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BLAST of mRNA_Ecto-sp9_F_contig1176.1464.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KK02_9STRA)

HSP 1 Score: 143 bits (361), Expect = 6.270e-35
Identity = 88/209 (42.11%), Postives = 114/209 (54.55%), Query Frame = 2 
Query:  404 ADPITAFLGKFL----PKGEKSNPPQAKYLVFNVGEDAKRRGMAAGEMASALDEALRSNGWFVTGRVDASLFSEGFFFSDPQVSLTGVEKYAEGVAKLFNQEESRCDVISTE----------------VDGEDIV----VNWRLSGRINL-PFNPP-IKPYIVTTTFE-RDSDGLLSTQRDEFSIAGWDILLHAVFPGHPFGADPAPPV 949
            A+P+T+FLG F+     K E  +  Q   +  +     K   +   EM   LD  +R N WFVTG+V + LF++ FFF DP V L G+EKYA+GV +LF+Q  SR +VIS E                +D +  V    V WRLSG +N+ PF    IKPYI  +    R+ DGL+  Q D F I GWDILL A+ P  PF A PAPPV
Sbjct:   77 ANPLTSFLGNFIGSKDEKMEIGDKEQENIVQLDDFTKPKAFNLPIEEMVKRLDAGIRENEWFVTGKVMSELFADDFFFKDPDVQLRGIEKYADGVNRLFDQNTSRVEVISCELNPAITDTVNKEVGVSIDDDKFVQVVTVEWRLSGNVNIGPFGGLFIKPYICYSDLHVRNVDGLIVYQEDRFDIPGWDILLSAIAPWLPFLAPPAPPV 285
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1176.1464.1 vs.
Match: Uncharacterized (protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RB30_THAOC)

HSP 1 Score: 142 bits (359), Expect = 7.850e-35
Identity = 86/193 (44.56%), Postives = 110/193 (56.99%), Query Frame = 2 
Query:  392 VDYSADPITAFLGKFLPKGEKSNPPQAKYLVFNVGEDAKRRGMAAGEMASALDEALRSNGWFVTGRVDASLFSEGFFFSDPQVSLTGVEKYAEGVAKLFNQEESRCDVISTEVDG---EDIVVNWRLSGRINLPFNPPIKPYIVTTTFERDSD-GLLSTQRDEFSIAGWDILLHAVFPGHPFGADPAPPVPPV 958
            VD   +  TAFL  F+ K     PP     V  +  DA +  ++  ++A+ALD  L +  WFVTG ++   F++ F F DP V LTGVE+YA GV KLF+Q+ SR ++IST V+      I V WRLSG +++     IKPYI  T F  D D GL+  Q D FSI GWDILL AVFP    G   AP  P V
Sbjct:   64 VDEYRNGATAFLSNFMQK----EPPTESDPVSEIDFDAPKVKLSIEDLAAALDFELYNREWFVTGLINPIYFADDFQFQDPDVKLTGVEEYARGVNKLFDQDTSRAEIISTVVNATVPNTITVTWRLSGGVSIGPGLEIKPYICYTDFTVDEDTGLIVFQEDRFSIPGWDILLSAVFP-FLIGTVTAPAAPAV 251
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1176.1464.1 vs.
Match: Hypothetical (protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6T8H729_HEMAN)

HSP 1 Score: 138 bits (348), Expect = 1.010e-33
Identity = 76/195 (38.97%), Postives = 101/195 (51.79%), Query Frame = 2 
Query:  374 GEDGDGVDYSADPITAFLGKFLPKGEKSNPPQAKYLVFNVG-EDAKRRGMAAGEMASALDEALRSNGWFVTGRVDASLFSEGFFFSDPQVSLTGVEKYAEGVAKLFNQEESRCDVISTEVDGEDIV-VNWRLSGRINLPFNPPIKPYIVTTTFERDSDGLLSTQRDEFSIAGWDILLHAVFPG-HPFGADPAPPV 949
            G  GD ++Y  DP+T  L  FLP G+          +  +     K  G++  +MA+ +D+ LR   WFVTG     LF   F F DP V   G+E+YA GV +LFNQE S   V+   V  E I+ V WRL G +N+     IKPY+V T  E   DGL+  Q D FSI  W++L+ A  P   P    P PP+
Sbjct:   50 GGKGDKLEYR-DPLTKVLANFLPGGKPGKSRDKSSAMDAIDWNKPKSSGLSVDQMAARVDQGLRERAWFVTGEALPELFHPDFEFKDPNVKTKGIEEYARGVHRLFNQEASSMQVVECAVSSEKIIGVKWRLEGAVNVGPGLEIKPYVVYTDLEVGQDGLIIAQEDRFSIPAWELLIWAFLPFLRPMLPPPCPPI 243
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1176.1464.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized8.290e-17396.81protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.490e-9899.33protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.920e-4443.46protein n=1 Tax=Tetradesmus obliquus TaxID=3088 Re... [more]
Uncharacterized1.470e-4346.20protein n=1 Tax=Chlamydomonas eustigma TaxID=11579... [more]
Uncharacterized2.350e-4145.00protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=... [more]
Hypothetical9.490e-3944.86protein (Fragment) n=1 Tax=Pelagomonas calceolata ... [more]
Uncharacterized1.600e-3638.89protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169... [more]
Hypothetical6.270e-3542.11protein (Fragment) n=1 Tax=Leptocylindrus danicus ... [more]
Uncharacterized7.850e-3544.56protein n=1 Tax=Thalassiosira oceanica TaxID=15974... [more]
Hypothetical1.010e-3338.97protein n=1 Tax=Hemiselmis andersenii TaxID=464988... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1176contigEcto-sp9_F_contig1176:10470..16251 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score496.5
Seed ortholog evalue7.3e-138
Seed eggNOG ortholog2880.D7FLC2
EggNOG OGs2D8NW@1,2S4PV@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionProtein of unknown function DUF2358
Ec32 orthologEc-12_007600.1
Exons5
Model size1759
Cds size753
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928435.0465698-UTR-Ecto-sp9_F_contig1176:10469..112611622928435.0465698-UTR-Ecto-sp9_F_contig1176:10469..11261Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1176 10470..11261 -
1692277869.968688-UTR-Ecto-sp9_F_contig1176:10469..112611692277869.968688-UTR-Ecto-sp9_F_contig1176:10469..11261Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1176 10470..11261 -
1622928435.1204455-UTR-Ecto-sp9_F_contig1176:16037..162511622928435.1204455-UTR-Ecto-sp9_F_contig1176:16037..16251Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1176 16038..16251 -
1692277870.0212758-UTR-Ecto-sp9_F_contig1176:16037..162511692277870.0212758-UTR-Ecto-sp9_F_contig1176:16037..16251Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1176 16038..16251 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928435.0578861-CDS-Ecto-sp9_F_contig1176:11261..113891622928435.0578861-CDS-Ecto-sp9_F_contig1176:11261..11389Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1176 11262..11389 -
1692277869.9776022-CDS-Ecto-sp9_F_contig1176:11261..113891692277869.9776022-CDS-Ecto-sp9_F_contig1176:11261..11389Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1176 11262..11389 -
1622928435.0700588-CDS-Ecto-sp9_F_contig1176:11594..117281622928435.0700588-CDS-Ecto-sp9_F_contig1176:11594..11728Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1176 11595..11728 -
1692277869.9853427-CDS-Ecto-sp9_F_contig1176:11594..117281692277869.9853427-CDS-Ecto-sp9_F_contig1176:11594..11728Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1176 11595..11728 -
1622928435.0827808-CDS-Ecto-sp9_F_contig1176:12091..121591622928435.0827808-CDS-Ecto-sp9_F_contig1176:12091..12159Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1176 12092..12159 -
1692277869.9939754-CDS-Ecto-sp9_F_contig1176:12091..121591692277869.9939754-CDS-Ecto-sp9_F_contig1176:12091..12159Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1176 12092..12159 -
1622928435.0946994-CDS-Ecto-sp9_F_contig1176:12566..127221622928435.0946994-CDS-Ecto-sp9_F_contig1176:12566..12722Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1176 12567..12722 -
1692277870.0032406-CDS-Ecto-sp9_F_contig1176:12566..127221692277870.0032406-CDS-Ecto-sp9_F_contig1176:12566..12722Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1176 12567..12722 -
1622928435.1098816-CDS-Ecto-sp9_F_contig1176:15770..160371622928435.1098816-CDS-Ecto-sp9_F_contig1176:15770..16037Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1176 15771..16037 -
1692277870.012169-CDS-Ecto-sp9_F_contig1176:15770..160371692277870.012169-CDS-Ecto-sp9_F_contig1176:15770..16037Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1176 15771..16037 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1176.1464.1prot_Ecto-sp9_F_contig1176.1464.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1176 11262..16037 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1176.1464.1

>prot_Ecto-sp9_F_contig1176.1464.1 ID=prot_Ecto-sp9_F_contig1176.1464.1|Name=mRNA_Ecto-sp9_F_contig1176.1464.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=251bp
MRSRDATALTVLSVLGVCHSFQVLPISPCRPRHAPCPLLRPRCAQTVCKS
AGKGEDGDGVDYSADPITAFLGKFLPKGEKSNPPQAKYLVFNVGEDAKRR
GMAAGEMASALDEALRSNGWFVTGRVDASLFSEGFFFSDPQVSLTGVEKY
AEGVAKLFNQEESRCDVISTEVDGEDIVVNWRLSGRINLPFNPPIKPYIV
TTTFERDSDGLLSTQRDEFSIAGWDILLHAVFPGHPFGADPAPPVPPVAS
*
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mRNA from alignment at Ecto-sp9_F_contig1176:10470..16251-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1176.1464.1 ID=mRNA_Ecto-sp9_F_contig1176.1464.1|Name=mRNA_Ecto-sp9_F_contig1176.1464.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=5782bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1176:10470..16251- (Ectocarpus species9 EcSCA_722f female)
CTCCTCGAAGTCCGGCTGGACGGCTGGACTGCCTGCTGTTTGATGATTTG
TTTGTTAAGATCCAACTAGTGGTACGTGGGGCGCTTCCATTCAGCGGCAC
CCCCGCACATGTTTGACAAACAATCAATATTGCACCGCACTGCTCTGCTC
GGTGTGCAAGGTGCAAGGTGTCATCCTCTGTGCAGCCTGTGGCTGCCCTA
CCCACCCTGTCACCATGCGCAGCCGGGACGCTACCGCCTTGACGGTCCTT
TCGGTGCTTGGGGTGTGCCACTCTTTCCAAGTCTTGCCGATTTCGCCGTG
CCGACCGCGACACGCACCCTGCCCGCTGCTGAGGCCTCGTTGTGCCCAAA
CGGTGTGCAAGAGTGCAGGCAAGGGTGAAGACGGGGACGGTGTGGATTAC
TCGGCGGATCCTATAACTGCGTTCCTCGGGAAGTTTCTGCCTAAGGGCGA
GAAGAGCAATCCGCCACAAGCGAAATATCTGGTGAGTGTTAGTATACTAG
ACATAGACTACATTCTTTTTCGTGATGTACACGTAGCGTCAAACGAGGTG
AAGCTACATAGCGGCAGTACACCAGACGTGCCGAGAGACATGCTAAAGGT
TTCAGTTTACAGCCCCTCCCCTCAACCGCAAACCGTAACCCCTCCCAAAC
TATGTAGAGGTGGGAACTTGGCAAGTTATGTCGTTGTTGGCGTCCATCGG
AAGGTTCTAGTCTAAATATGTTGGTAGTCTCTCTGTGTGTACTTAAATGT
TTTCTTGTATGTACCCCGGACCGATTTTGAAAGCTCGATTACGCTACGAC
GAAGAAGACACATAAACTAAACGATACGTTTTCGGAGAGCTCTCGACGAG
TCGGCTTCAACGCCGCCGTTTTCGGCGCAGTGACTCTTTCTGCTGTTGAG
AAATCGAGCTTTTGAAAATCGGTGCAGGGGGTGTGTCATCATGTGTCGTT
ACGGTAGTCTGGTCTTGCACCAGTGAGAGCCATTTGACTACAGACAGTGC
CGGCCCGCGGGTGAGGAACACCCATGTTTAGGTGAGGCGCAACACATAAT
TCACACCCTATCGCTGCAGCGAAAATGTGAGGTGTAGTTCTTGTGTCACC
ACCATTGCGTGTGTTTGACAGAGAAGGTTACTGGTACACGTTGTCTCGCT
CTGATTTTTTCTTTTTGGGAGTATGCCAGCCAGTATTCGGCCGTCTCTAT
TTACACGAACCTTCCATTTACGCTCTGCTTGCTAGCATGTCTGCCGGTTC
TACTGGACAACTATACATACAAGTACATGACCTCGCACACACTAAGTCAT
CGTTGGGAGGGCGAACGAAACATTCAATCCATTCCCCATCAATATTCAAA
TCCAATCGTCAGGTGCTCCCGAACTTCACTGATCCTCATCTCTGGTCACT
GCTTTTGGATTGCGTTCGGAGTCCGCGCTATGGAAGCCGAAATCAACCCA
TCACACTAGTCAGCGCTGCCTAACGTTTTAATTTAGGCTCTCTCGAAATT
TAATCGTTACGCTCCTGGAGTGCTGCCGACTCGTCGCAACTCGATGAACG
CCCATGATCCACACGTCACCTATATTGCTCGTCCATGGGCTTGTTCGCCA
TCAAGTGTTTTTATTTTTATGGTGTTGTCTTTGACTTTAGCCATCATCAA
CCAACCTCGATCCGACACTCTCGAGGTGTGCCGATGGATGTATTGGAGAG
TGTCAAATCTCCTCCGTGCGCATGAAACACAGATGATCACAGGCAGGGGC
GGTTCTTGCTTTGTTTGTTGGGGTTGGTTTCGGATAGCTGAATTTACCCC
GAAGACTACTATTATAGACCATTTTTTCAACCAGGAAAGTGCCGAGACAA
GAATCAGTCGCACAGCAGTATATATCACTGGCAATCTGTTCGTAAACCAA
TTCTGCCTCATTTGTGATCGAGCCAGACAGTACTTGTCATATGCTTCCGA
TCAGCCGCGAATTACCCGCGATGGTGTGGAATTCGGGCCCCTCCCACCCC
CCGTGCCCCACTTTTCACTCACAGCTGTTGAAAGAAGGGGTACGGGAGGA
TTATTCCATGTCTTCCTGCCCAGTGGTTGATTGCATGCCGGTAGAAAGGT
GGTCAGCTCGGTTGAAAGCAGCATTTTGCCAACTTTCGAAGCGTTCAAAG
TGCTCTTGGTGGCATGGCGGCCCTTCTGCAACACCCTCTGCAACATCGCA
ATGGCCGACAGCGCCATGAAAAAGGAACGTGGCACTCTCGTACAGGGTTC
TTAAGCACCCCAGATGCACAAGGTGTCACCACGGGCGCTCATGGCAGCGA
AAGTGAGTCAGGAGCTCATCAAACAAACATGCTTCTGTCATGGTTTGTCC
CCAGATGTGCGCAAGAGTCCTCCCAACACAAACTAGAGTATGTAAACATC
GATGAAAAAGACGTTTGGCTGAATAGCGCACGACACCCATGCCGATCCCA
CACTCGATGAGAAAGGTCTGGTGGTAAAACCTTCTGAGATGTGCTCTAAA
GCCACTGCTTTCATCAAGAGTCAGGAGTGTCGCTCGCGACATACAAACCA
CATGCCGACAAGGACACTTTTCGCGTTGAACTTTGCGGGGGGAAATGGCC
ACCGTGTGTTGCGAAGAACAGCACATGATGTTGCGAGAGAGTCTCAAGCC
TGTTGCAATGCTGTTTTGAAACATGTCACAGCGGAAGAGGCTTGCCACCT
GACGAAAGGAATGACTGTAGAGGGCACCCCGGAAGGTTTCAACGTCAGAC
ATTCCTTGATCGAGTGTGGGATCGATATGGGTGCCGCCGTGTGCTGTTGA
TCAAGCGTCTCTTTCATTGTTTTTTACATGCTCTTGTGTGTGGACAAACC
ATGACAGAAGCATGTTTGTTTGGTAAGCGCCTGACTCGTCTTTCGCTGCC
ATGAGCGCCCGTGGTGACACCTTGTAGATCTGGGGTGCTTAAGAATCCTA
TGCGAGTGTGCGATTGTACGTTCATTTTCATGGCGTAGTCGGCGATGGCG
ATGCAGTAGAGGGATCAGCCACCCGGAGGGCTCCGGGCGTGTCGAAAAAA
TGGCAATTTGTTGCTTTCGCGGTGACATCGCCTGCGACTGGGTCGTTCTT
GGATCTGTTCTGGCTGCAGCATTCGCAGCCTACGAAGCAAGAAAATACCA
TATGGTGGATTTGGCGCAACTTGCTCTTTTCGAGGAGCTTAAGCGTTTAG
GCTGGACACCCCGAGGTGCGCAACGCTGTCCGCGGGGCGGGGGTGCGGCG
CTCAATTATTTGCAAGGGACGACACGACCGCGTTACATATCCTGTGGGCA
AAGGTTCTCGTTTGTGCTGGTTTTGGTGCATGAGTGGGCTCACACCTAGC
CCGTTTCCTCTCTGTGGCGTCTGCGTAGGGCGGCATGCGCTGGGGAGATA
CAGAGAGGTTCTCAAAAGAGCATCCGTTGAAGCGGCGTTTGTTTTCCAGC
CAAATGTGCCCTAATTCGCCCACCTTTCGTACTGCTGTACCGCAAATCTT
GTTGCTCGATTTACGGCCAAACGCGGCAGGTGTTCAACGTCGGCGAGGAC
GCGAAACGAAGAGGCATGGCCGCGGGGGAGATGGCGTCTGCCCTCGACGA
GGCCCTGAGAAGCAACGGCTGGTTCGTTACCGGGCGAGTAGACGCCTCCC
TTTTCAGCGAAGGCTTCTTCTTTTCGGACCCGCAGGTGACAAGACTGACG
AACGACGCGCGTATTTTTTCCTAAGGCACAGATCGGGCCCGCGATCAAGA
GAAACGAAGACAACAGACGCTCGAATTAATTTCCACCCAAGAATTTGACA
ATCGGGTTCAAAACACACACAGCTAGCTCAGCGGCGAATCCTATACTAAA
CTCTTTAGAAATTGATTAACCCTCGCTCCACGGTGGAGACGAAACGACAA
AGAGAACCTCATACCGAAATCGATGGTTGCGGACCCGTTCTGTACAGCCA
CTCTGTAGCATTCGATTTGGAATGATTGTGCGCCCACGCTCTTCTTGGAC
AAACTCTTTTCATGGGTGCCATCACCGGAGCAGTAACATCGAGGCTGACT
ACTGTAGAACCAAACTGCTTGCTCGGCGTGCCCGTGTATCAGGTGTCCCT
CACCGGAGTCGAAAAATACGCCGAAGGCGTGGCGAAGCTGTTTAACCAGG
AAGAGTCCAGGTGCGGCGTAATTAGTCCGGGTTTTGTCCCGGTGGTGACG
AGCGTTCGCTTCGTTTCAAACACCTCCGTGTGTTTACTGCCGGAAGAAGG
GATTCAGTGTGTCTCGGGGTATTCGTAGTCGGTGCGAGAACCACACTCGC
TCTTGTCCGCTCGTGTAGCCGTTAATTTTTTTATAGCAAAATCGTATCCA
GTCCTGCCCCAGGTGGAGGTCCATGGGCGGTGAGTTGATATGGAGTGTGA
TTGCACCCACCAGCATTGCCGAGTCCTCGTGGAATATGCAGCAGGAGGTA
TCTCCCAAGGGGGAAAAAACTCATCCATGCCGTAGCAGTCGTCTTGCTCA
TATCGCGATCCGTACGTACGCAGGTGTGACGTCATTTCCACGGAGGTGGA
CGGGGAGGACATTGTGGTGAACTGGCGTCTCTCCGGGCGGATAAACCTGC
CGTTCAACCCTCCCATCAAGCCTTACATTGTGACCACTACCTTCGAGAGA
GACTCAGGTCAGTGCCCTTGCCTGTAGTAGAGGTGGTGGTGCTCCCGAAC
GTTTTGGTCGGCAGCAGAGTGTTTGTGTGTGTGAGAGAGAGAGAGACGGA
GGAAGGCGTGCCTCGGCTCCGTTGCTCATCTCCCCATCATGAGTGTTTTG
GTTGCAGGGTGTTTACCCCCCCTTCGTCCCGCCGCTCCGCCCGCCACCGC
GTCCTCCTTCAGACGGGCTGCTGAGCACGCAACGGGACGAGTTTTCCATC
GCCGGCTGGGACATCTTGCTGCATGCCGTGTTTCCCGGTCACCCTTTCGG
GGCGGACCCTGCCCCTCCCGTGCCCCCGGTCGCCTCGTGACGATATAGAT
GCTGCTTTTGCCGCAGTGGAACATTTGTGTTTCTACAGTATACGGCACCT
GTTGGCACGACAGAGGCGTTGGCGCCAGTAGATGATGCGGAGCTCTGCTC
TGACTTTGCAGCAGTTTTGACGTTTGGTTGGTTGGGGAATGCCAGGTGCT
GTCGTTGGGCAGATTTTCACTGCGTTGTGTAGCATGGGCATCAGTTCTTG
AAGGTCAACGGCAACCACAAACAAGTACTTATTTAGTATGCACAAAGAAA
GAGACGCAATCATGCGCGCTCAAGCTTCCCATCGAAGTAAATCGACGCAG
CAGGTATTCTTGCTTGGGGTTCATTCAGTAGGACATCGCGCCACATAGCA
CATCAGTGTTGGTAATGTGGTGATGATCCTGCGTTATATCGCTGCTGCGT
CAACTGTGCTGGCAAAACGATAGGTCCAGGGAAGGAATTGGTTTGTGTTA
CACGCGCACAATTATGGCCGTTGTGTTTCTGTGATCAGCATCGACTGCGC
TGTCCGAATGGCAATTGATGAAGACGTCAATCGAAATTCGTGGGATATTG
GGCGCATACGCGCTCTGTGTATGTCGTCATCCCACATTTATACTGGACGA
CGCCGTTTCCATGTGTTGTCGGTGTGATTTCTCCCCAGCCCGAGGTCACG
CAACAAGTAGTCTATTACTTCCTTTGTGTAACGAACCGCCATTCGTTTCA
CCCGCAAAAAAAAAAGAGGTCCGACAGGGAACCAGAGACCCACGAAGTAA
GTGCGAACCATGAGATAATTAGTTCACCCGAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1176:10470..16251-

>mRNA_Ecto-sp9_F_contig1176.1464.1 ID=mRNA_Ecto-sp9_F_contig1176.1464.1|Name=mRNA_Ecto-sp9_F_contig1176.1464.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1506bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1176:10470..16251- (Ectocarpus species9 EcSCA_722f female)
ATGCGCAGCCGGGACGCTACCGCCTTGACGGTCCTTTCGGTGCTTGGGGT
GTGCCACTCTTTCCAAGTCTTGCCGATTTCGCCGTGCCGACCGCGACACG
CACCCTGCCCGCTGCTGAGGCCTCGTTGTGCCCAAACGGTGTGCAAGAGT
GCAGGCAAGGGTGAAGACGGGGACGGTGTGGATTACTCGGCGGATCCTAT
AACTGCGTTCCTCGGGAAGTTTCTGCCTAAGGGCGAGAAGAGCAATCCGC
CACAAGCGAAATATCTGATGCGCAGCCGGGACGCTACCGCCTTGACGGTC
CTTTCGGTGCTTGGGGTGTGCCACTCTTTCCAAGTCTTGCCGATTTCGCC
GTGCCGACCGCGACACGCACCCTGCCCGCTGCTGAGGCCTCGTTGTGCCC
AAACGGTGTGCAAGAGTGCAGGCAAGGGTGAAGACGGGGACGGTGTGGAT
TACTCGGCGGATCCTATAACTGCGTTCCTCGGGAAGTTTCTGCCTAAGGG
CGAGAAGAGCAATCCGCCACAAGCGAAATATCTGGTGTTCAACGTCGGCG
AGGACGCGAAACGAAGAGGCATGGCCGCGGGGGAGATGGCGTCTGCCCTC
GACGAGGCCCTGAGAAGCAACGGCTGGTTCGTTACCGGGCGAGTAGACGC
CTCCCTTTTCAGCGAAGGCTTCTTCTTTTCGGACCCGCAGGTGTTCAACG
TCGGCGAGGACGCGAAACGAAGAGGCATGGCCGCGGGGGAGATGGCGTCT
GCCCTCGACGAGGCCCTGAGAAGCAACGGCTGGTTCGTTACCGGGCGAGT
AGACGCCTCCCTTTTCAGCGAAGGCTTCTTCTTTTCGGACCCGCAGGTGT
CCCTCACCGGAGTCGAAAAATACGCCGAAGGCGTGGCGAAGCTGTTTAAC
CAGGAAGAGTCCAGGTGTCCCTCACCGGAGTCGAAAAATACGCCGAAGGC
GTGGCGAAGCTGTTTAACCAGGAAGAGTCCAGGTGTGACGTCATTTCCAC
GGAGGTGGACGGGGAGGACATTGTGGTGAACTGGCGTCTCTCCGGGCGGA
TAAACCTGCCGTTCAACCCTCCCATCAAGCCTTACATTGTGACCACTACC
TTCGAGAGAGACTCAGGTGTGACGTCATTTCCACGGAGGTGGACGGGGAG
GACATTGTGGTGAACTGGCGTCTCTCCGGGCGGATAAACCTGCCGTTCAA
CCCTCCCATCAAGCCTTACATTGTGACCACTACCTTCGAGAGAGACTCAG
ACGGGCTGCTGAGCACGCAACGGGACGAGTTTTCCATCGCCGGCTGGGAC
ATCTTGCTGCATGCCGTGTTTCCCGGTCACCCTTTCGGGGCGGACCCTGC
CCCTCCCGTGCCCCCGGTCGCCTCGTGAACGGGCTGCTGAGCACGCAACG
GGACGAGTTTTCCATCGCCGGCTGGGACATCTTGCTGCATGCCGTGTTTC
CCGGTCACCCTTTCGGGGCGGACCCTGCCCCTCCCGTGCCCCCGGTCGCC
TCGTGA
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