mRNA_Ecto-sp9_F_contig1174.1450.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig1174.1450.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0T4_ECTSI) HSP 1 Score: 347 bits (891), Expect = 3.470e-113 Identity = 277/286 (96.85%), Postives = 280/286 (97.90%), Query Frame = 1
Query: 61 MKTVAFAYAVAACAGGADAFVGSMRPASSSMRRAGPSSSVRMAADVTVPDLLKQTEKLKLLSXXXXXXXXXXXXXXXLTLKDVERLLPLVDENDLIGLAKGVGPDLLKVAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAALVTVLPDDSVSSIAIETFVAFPLLFVLPAVCGVAGFALTSLKNGSLVDLITSTASPKPAAASPVAXXXAPVAMKASKPSAPAAAPKSSGGRPALGARSXXXXXXXXXXXXAAPKKAAPKXXXXXXKPAGNIANLPKAL 918
MKTVAFA AVAACAGGADAFVGSMRPASSSMRRAGPSSSVRMAADVTVPDLLKQTEKLKLL XXXXXXXXXXXXXXX TLKDVE+LLPLVDENDLIGLAKGVGPDLLKVAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAALVTVLPDDSVSSIAIETFVAFPLLFVLPAVCGVAGFALTSLKNGSLVD ITSTASPKPAAASPVA XAPVA+KASKPSAPAAAPKSSGGRPA+GARSXXXXXXXXXXXXAAPKKAAPKXXXXXXKPAGNIANLPKAL
Sbjct: 1 MKTVAFACAVAACAGGADAFVGSMRPASSSMRRAGPSSSVRMAADVTVPDLLKQTEKLKLLXXXXXXXXXXXXXXXXXTLKDVEKLLPLVDENDLIGLAKGVGPDLLKVAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAALVTVLPDDSVSSIAIETFVAFPLLFVLPAVCGVAGFALTSLKNGSLVDFITSTASPKPAAASPVASSXAPVAVKASKPSAPAAAPKSSGGRPAVGARSXXXXXXXXXXXXAAPKKAAPKXXXXXXKPAGNIANLPKAL 286
BLAST of mRNA_Ecto-sp9_F_contig1174.1450.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z532_9STRA) HSP 1 Score: 90.9 bits (224), Expect = 5.240e-17 Identity = 97/197 (49.24%), Postives = 124/197 (62.94%), Query Frame = 1
Query: 61 MKTVAFAYAVAACAGGADAFV--GSMRPASSSMRRAGPSSSVRMAADVTVPDLLKQTEKLKLLSXXXXXXXXXXXXXXXLTLKDVERLLPLVDENDLIGLAKGVGPDLLKVAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAALVTVLPDDSVSSIAIETFVAFPLLFVLPAVCGVAGFALTSLKNGSLV 645
+K +A A A+AACA ADAF GS+RPA + R G + +V + V +LL +TE+LKLLS XXXXXXXXXXXXLTL+D+E LP +D+ D I L K + PDLL +AP XXXXXXXXXXXXXXXXX G A + +PDDS+ +IA++ F+A PLL + P V LT +G+LV
Sbjct: 2 VKAIAAAAAIAACATSADAFAVPGSVRPA---VARRGMTMAVSKGS---VQELLIKTEELKLLSTASXXXXXXXXXXXXLTLRDLEAALPFLDDIDAIALGKELSPDLLAIAPKALEAXXXXXXXXXXXXXXXXXALLTGAALSVVAGLAAIAAIPDDSIGAIALQAFLAVPLLVLAPGAAVVGAGVLTKANDGTLV 192
BLAST of mRNA_Ecto-sp9_F_contig1174.1450.1 vs.
Match: Uncharacterized (protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4F6S3_VITBC) HSP 1 Score: 59.3 bits (142), Expect = 1.950e-6 Identity = 70/180 (38.89%), Postives = 94/180 (52.22%), Query Frame = 1
Query: 115 AFVGSMRPASSSMRR--AGPSSSVRMAADV---TVPDLLKQTEKLKLLSXXXXXXXXXXXXXXXLTLKDVERLLPLVDENDLIGLAKGVGPDLLKVAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAALVTVLPDDSVSSIAIETFVAFPLLFVLPAVCGVAGFALTSLKNGS 639
AF S PA RR A P++ ++AAD VP +LK+TE+L+LLS XXXXXXXXXXLTL +E LL +VDE + + V P ++ P XXXXXXX G + LPDDSV+S+A++TF+ PL +LP V V F +++ S
Sbjct: 21 AFTASPVPALLHSRRSVASPATRRQVAADEYEDVVPRVLKRTEELQLLSKLAEAXXXXXXXXXXLTLSQIEPLLKVVDEQYALYGLEEVAPKIVPALPALLEXXXXXXXVASAVLSTPWFVFVLLSIASFAGGVGQLLYLPDDSVTSVALQTFLFVPLAVILPGVALVTAFITARVQSKS 200 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1174.1450.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig1174.1450.1 >prot_Ecto-sp9_F_contig1174.1450.1 ID=prot_Ecto-sp9_F_contig1174.1450.1|Name=mRNA_Ecto-sp9_F_contig1174.1450.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=287bp MKTVAFAYAVAACAGGADAFVGSMRPASSSMRRAGPSSSVRMAADVTVPDback to top mRNA from alignment at Ecto-sp9_F_contig1174:14268..22456+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig1174.1450.1 ID=mRNA_Ecto-sp9_F_contig1174.1450.1|Name=mRNA_Ecto-sp9_F_contig1174.1450.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=8189bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1174:14268..22456+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1174:14268..22456+ >mRNA_Ecto-sp9_F_contig1174.1450.1 ID=mRNA_Ecto-sp9_F_contig1174.1450.1|Name=mRNA_Ecto-sp9_F_contig1174.1450.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1722bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1174:14268..22456+ (Ectocarpus species9 EcSCA_722f female)back to top |