mRNA_Ecto-sp9_F_contig11738.1448.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11738.1448.1
Unique NamemRNA_Ecto-sp9_F_contig11738.1448.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig11738.1448.1 vs.
Match: MEKK (and related serine/threonine protein kinases amardillo repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLC1_ECTSI)

HSP 1 Score: 398 bits (1022), Expect = 2.050e-126
Identity = 201/212 (94.81%), Postives = 203/212 (95.75%), Query Frame = 1
Query:   13 QGEIDLLKKLNHPNIVQYIDTIQTAEHLHIVLEIMESSLSAMCKKFGNFSESLTAIYMTQVLEGLKYLHDQGVLHRDIKGANILTTKRGLVKLADFGVAMKLSDKQAFDVDVVGCVCGRAGVGTPYWMAPEIIEMTGTTTACDVWSVGCTIIELLEGKPPYFDLPQMTALYKIVQDDHPPLPDGTSQALRDFLLQCFKKQAQMRKSSVELLR 648
            +GEIDLLKKLNHPNIVQYIDTIQT+EHLHIVLEIMESSLSAMCKKFGNFSESLTAIYMTQVLEGLKYLHDQGVLHRDIKGANILTTKRGLVKLADFGVAMKLSDKQAFDVDVVG         TPYWMAPEIIEMTGTTTACDVWSVGCTIIELLEGKPPYFDLPQMTALYKIVQDDHPPLPDGTSQALRDFLLQCFKKQAQMRKSSVELLR
Sbjct:   95 KGEIDLLKKLNHPNIVQYIDTIQTSEHLHIVLEIMESSLSAMCKKFGNFSESLTAIYMTQVLEGLKYLHDQGVLHRDIKGANILTTKRGLVKLADFGVAMKLSDKQAFDVDVVG---------TPYWMAPEIIEMTGTTTACDVWSVGCTIIELLEGKPPYFDLPQMTALYKIVQDDHPPLPDGTSQALRDFLLQCFKKQAQMRKSSVELLR 297          
BLAST of mRNA_Ecto-sp9_F_contig11738.1448.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GCW8_9STRA)

HSP 1 Score: 278 bits (710), Expect = 2.720e-89
Identity = 137/212 (64.62%), Postives = 168/212 (79.25%), Query Frame = 1
Query:   13 QGEIDLLKKLNHPNIVQYIDTIQTAEHLHIVLEIMES-SLSAMCKKFGNFSESLTAIYMTQVLEGLKYLHDQGVLHRDIKGANILTTKRGLVKLADFGVAMKLSDKQAFDVDVVGCVCGRAGVGTPYWMAPEIIEMTGTTTACDVWSVGCTIIELLEGKPPYFDLPQMTALYKIVQDDHPPLPDGTSQALRDFLLQCFKKQAQMRKSSVELL 645
            Q EI LL+ LNHPNIV+Y+DT++T +HLHI+LE +E+ SL+   KKFG FSE L AIY++QVLEGL YLHDQGV+HRDIKGANILTTK GLVKLADFGVA+  ++K              + VGTPYWMAPEIIEM G ++ACD+WSVGCT++ELL GKPPYFDL  MTAL++IVQDD+PPLPDG S ALR+FL++CF+K+   RK +  LL
Sbjct:  102 QLEIQLLRSLNHPNIVKYVDTVRTDDHLHIILEFVENGSLAQTIKKFGPFSEPLCAIYVSQVLEGLAYLHDQGVVHRDIKGANILTTKDGLVKLADFGVAISDTEKS------------NSVVGTPYWMAPEIIEMAGPSSACDIWSVGCTVVELLTGKPPYFDLRPMTALFRIVQDDYPPLPDGISPALREFLVECFRKEPSFRKDASALL 301          
BLAST of mRNA_Ecto-sp9_F_contig11738.1448.1 vs.
Match: Kinase-like (domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8J4_9STRA)

HSP 1 Score: 253 bits (645), Expect = 7.750e-83
Identity = 128/156 (82.05%), Postives = 137/156 (87.82%), Query Frame = 1
Query:   19 EIDLLKKLNHPNIVQYIDTIQTAEHLHIVLEIMESSLSAMCKKFGNFSESLTAIYMTQVLEGLKYLHDQGVLHRDIKGANILTTKRGLVKLADFGVAMKLSDK-QAFDVDVVGCVCGRAGVGTPYWMAPEIIEMTGTTTACDVWSVGCTIIELLEG 483
            EIDLLKKLNH NIVQYIDTIQT  HLHI+LEIMESSLSAMCKKFGNFSESLTAIYMTQVLEGLKYLHDQGVLHRD+KGANILTTK G++KLADFGVA+KLSD  +  D+DVVG         TPYWMAPEIIEM GTT+ACD+WSVGCTIIELL G
Sbjct:   26 EIDLLKKLNHANIVQYIDTIQTDTHLHIILEIMESSLSAMCKKFGNFSESLTAIYMTQVLEGLKYLHDQGVLHRDVKGANILTTKNGVLKLADFGVAIKLSDNLEGEDMDVVG---------TPYWMAPEIIEMKGTTSACDIWSVGCTIIELLTG 172          
BLAST of mRNA_Ecto-sp9_F_contig11738.1448.1 vs.
Match: Serine/threonine-protein (kinase sepA n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G9U7_9STRA)

HSP 1 Score: 276 bits (707), Expect = 2.020e-82
Identity = 142/217 (65.44%), Postives = 171/217 (78.80%), Query Frame = 1
Query:    1 LLFFQGEIDLLKKLNHPNIVQYIDTIQTAEHLHIVLEIMES-SLSAMCKKFGNFSESLTAIYMTQVLEGLKYLHDQGVLHRDIKGANILTTKRGLVKLADFGVAMKLSDKQAFDVDVVGCVCGRAGVGTPYWMAPEIIEMTGTTTACDVWSVGCTIIELLEGKPPYFDLPQMTALYKIVQDDHPPLPDGTSQALRDFLLQCFKKQAQMRKSSVELLR 648
            L   + E+ LLKKL+HPNIV+YIDT++T +HLHIVLE ME+ SL+   K FG  S+SL A+Y+ QVL GL YLHDQGV+HRDIKGANILTTK+GLVKLADFGVA   S  Q+ DV           VGTPYWMAPEIIE++G TTACD+WSVGCTIIELL  KPPYFD+P M ALY+IVQD+HPPLP+G S ALRDFL+ CFKK+ ++R ++ +LLR
Sbjct:   58 LRLIEEEVSLLKKLDHPNIVKYIDTVRTHDHLHIVLEYMENGSLARNLKLFGALSQSLCALYIRQVLMGLAYLHDQGVIHRDIKGANILTTKQGLVKLADFGVATHTS-AQSNDV-----------VGTPYWMAPEIIEISGPTTACDIWSVGCTIIELLTLKPPYFDIPPMAALYRIVQDEHPPLPEGLSPALRDFLVLCFKKEPRLRSTAKDLLR 262          
BLAST of mRNA_Ecto-sp9_F_contig11738.1448.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FDH2_PYTOL)

HSP 1 Score: 274 bits (701), Expect = 5.190e-82
Identity = 137/216 (63.43%), Postives = 168/216 (77.78%), Query Frame = 1
Query:    1 LLFFQGEIDLLKKLNHPNIVQYIDTIQTAEHLHIVLEIMES-SLSAMCKKFGNFSESLTAIYMTQVLEGLKYLHDQGVLHRDIKGANILTTKRGLVKLADFGVAMKLSDKQAFDVDVVGCVCGRAGVGTPYWMAPEIIEMTGTTTACDVWSVGCTIIELLEGKPPYFDLPQMTALYKIVQDDHPPLPDGTSQALRDFLLQCFKKQAQMRKSSVELL 645
            LL  + EI LL+KLNH NIV+Y DTI+T  HLHIVLE+ME+ SL+   KKFG+FSE+L A+Y+TQVL GL YLH+QGVLHRD+KGANILTTK GLVKLADFGVA+KL++ Q             + VG+PYWMAPE+IEM G + A D+WSVGCTIIELL  KPPYFDL  M AL++IVQDDHPPLP+  S AL DF+++CF K+ ++R S+ ELL
Sbjct:   88 LLSIESEISLLRKLNHENIVKYYDTIKTQSHLHIVLELMENGSLAQFMKKFGSFSETLVAMYITQVLRGLAYLHEQGVLHRDVKGANILTTKEGLVKLADFGVAIKLNETQK----------SHSVVGSPYWMAPEVIEMAGWSFASDIWSVGCTIIELLSTKPPYFDLAPMAALFRIVQDDHPPLPERISPALHDFIMKCFMKEPRLRSSAEELL 293          
BLAST of mRNA_Ecto-sp9_F_contig11738.1448.1 vs.
Match: Hypothetical (protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WEB9_9STRA)

HSP 1 Score: 271 bits (692), Expect = 9.480e-81
Identity = 137/217 (63.13%), Postives = 166/217 (76.50%), Query Frame = 1
Query:    1 LLFFQGEIDLLKKLNHPNIVQYIDTIQTAEHLHIVLEIMES-SLSAMCKKFGNFSESLTAIYMTQVLEGLKYLHDQGVLHRDIKGANILTTKRGLVKLADFGVAMKLSDKQAFDVDVVGCVCGRAGVGTPYWMAPEIIEMTGTTTACDVWSVGCTIIELLEGKPPYFDLPQMTALYKIVQDDHPPLPDGTSQALRDFLLQCFKKQAQMRKSSVELLR 648
            L+  + E+ LLKKL+HPNIV+YIDT++T E+L IVLE ME+ SL+   + FG  S+SL A+Y+ Q+L GL YLH+QGV+HRDIKGANILTTK+GLVKLADFGVA   S                  VGTPYWMAPEIIEM+G TTACD+WSVGCTIIELL  KPPYFD+P M ALY+IVQDDHPPLP+G S ALR+FLL CF+K+  +R S+ +LLR
Sbjct:   53 LMNIEQEVSLLKKLDHPNIVKYIDTVRTGENLFIVLEYMENGSLAQNLRLFGTLSQSLCALYIRQILNGLSYLHEQGVIHRDIKGANILTTKQGLVKLADFGVATHSS------------ATSNEVVGTPYWMAPEIIEMSGPTTACDIWSVGCTIIELLTIKPPYFDIPPMAALYRIVQDDHPPLPEGLSPALREFLLLCFRKEPLLRSSAKDLLR 257          
BLAST of mRNA_Ecto-sp9_F_contig11738.1448.1 vs.
Match: Uncharacterized (protein n=1 Tax=Carya illinoinensis TaxID=32201 RepID=UPI001C351385)

HSP 1 Score: 251 bits (640), Expect = 4.050e-80
Identity = 130/212 (61.32%), Postives = 159/212 (75.00%), Query Frame = 1
Query:   19 EIDLLKKLNHPNIVQYIDTIQTAEHLHIVLEIMES-SLSAMCK--KFGNFSESLTAIYMTQVLEGLKYLHDQGVLHRDIKGANILTTKRGLVKLADFGVAMKLSDKQAFDVDVVGCVCGRAGVGTPYWMAPEIIEMTGTTTACDVWSVGCTIIELLEGKPPYFDLPQMTALYKIVQDDHPPLPDGTSQALRDFLLQCFKKQAQMRKSSVELL 645
            EIDLLK LNH NIV+Y+ +++T  HLHI+LE +E+ SL+ + K  KFG F ESL A+Y+ QVLEGL YLH+QGV+HRDIKGANILTTK GLVKLADFGVA KL++    DV+        + VGTPYWMAPE+IEM+G   A D+WSVGCT+IELL   PPY+DL  M AL++IVQDDHPP+PD  S  + DFL QCFKK A+ R  +  LL
Sbjct:   67 EIDLLKNLNHKNIVKYLGSLKTKTHLHIILEYVENGSLANIIKPNKFGPFPESLVAVYIAQVLEGLVYLHEQGVIHRDIKGANILTTKEGLVKLADFGVATKLTEA---DVNT------HSVVGTPYWMAPEVIEMSGVCAASDIWSVGCTVIELLTCVPPYYDLQPMPALFRIVQDDHPPIPDSLSPDITDFLRQCFKKDARQRPDAKTLL 269          
BLAST of mRNA_Ecto-sp9_F_contig11738.1448.1 vs.
Match: Protein (kinase domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X170_GLOUD)

HSP 1 Score: 268 bits (685), Expect = 1.270e-79
Identity = 137/216 (63.43%), Postives = 167/216 (77.31%), Query Frame = 1
Query:    1 LLFFQGEIDLLKKLNHPNIVQYIDTIQTAEHLHIVLEIMES-SLSAMCKKFGNFSESLTAIYMTQVLEGLKYLHDQGVLHRDIKGANILTTKRGLVKLADFGVAMKLSDKQAFDVDVVGCVCGRAGVGTPYWMAPEIIEMTGTTTACDVWSVGCTIIELLEGKPPYFDLPQMTALYKIVQDDHPPLPDGTSQALRDFLLQCFKKQAQMRKSSVELL 645
            LL  + EI LLKKLNH NIV+Y DTI+T  +L+IVLE ME+ SL+   KKFG+FSE+L A+Y+TQVL GL YLH+QGVLHRD+KGANILTTK GLVKLADFGVA+KLS+ Q             + VG+PYWMAPE+IEM G + A D+WSVGCTIIELL  KPPYFDL  M AL++IVQDDHPPLP+  S AL DF+++CF K+ ++R S+ ELL
Sbjct:  116 LLSIESEISLLKKLNHENIVKYHDTIRTQTYLYIVLEYMENGSLAQFMKKFGSFSETLVAMYITQVLRGLAYLHEQGVLHRDVKGANILTTKDGLVKLADFGVAIKLSETQK----------SNSVVGSPYWMAPEVIEMAGWSFASDIWSVGCTIIELLSTKPPYFDLAPMAALFRIVQDDHPPLPERISPALHDFIMKCFMKEPRLRGSAEELL 321          
BLAST of mRNA_Ecto-sp9_F_contig11738.1448.1 vs.
Match: MEKK (n=4 Tax=Pentapetalae TaxID=1437201 RepID=A0A2G9GH18_9LAMI)

HSP 1 Score: 251 bits (640), Expect = 1.650e-79
Identity = 130/212 (61.32%), Postives = 160/212 (75.47%), Query Frame = 1
Query:   19 EIDLLKKLNHPNIVQYIDTIQTAEHLHIVLEIMES-SLSAMCK--KFGNFSESLTAIYMTQVLEGLKYLHDQGVLHRDIKGANILTTKRGLVKLADFGVAMKLSDKQAFDVDVVGCVCGRAGVGTPYWMAPEIIEMTGTTTACDVWSVGCTIIELLEGKPPYFDLPQMTALYKIVQDDHPPLPDGTSQALRDFLLQCFKKQAQMRKSSVELL 645
            EIDLLK LNH NIV+Y+ +++T  HLHI+LE +E+ SL+ + K  KFG F ESL A+Y+ QVLEGL YLH+QGV+HRDIKGANILTTK GLVKLADFGVA KL++    DV+        + VGTPYWMAPE+IEM+G   A D+WSVGCT+IELL   PPY+DL  M AL++IVQD+HPP+PD  S A+ DFL QCFKK A+ R  +  LL
Sbjct:   67 EIDLLKNLNHKNIVKYLGSLKTKTHLHIILEYVENGSLANIIKPNKFGPFPESLVAVYIAQVLEGLVYLHEQGVIHRDIKGANILTTKEGLVKLADFGVATKLTEA---DVNT------HSVVGTPYWMAPEVIEMSGVCAASDIWSVGCTVIELLTCVPPYYDLQPMPALFRIVQDEHPPIPDTLSPAITDFLRQCFKKDARQRPDAKTLL 269          
BLAST of mRNA_Ecto-sp9_F_contig11738.1448.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CS36_9STRA)

HSP 1 Score: 248 bits (632), Expect = 3.520e-79
Identity = 128/213 (60.09%), Postives = 161/213 (75.59%), Query Frame = 1
Query:   13 QGEIDLLKKLNHPNIVQYIDTIQTAEHLHIVLEIMES-SLSAMCKKFGNFSESLTAIYMTQVLEGLKYLHDQGVLHRDIKGANILTTKRGLVKLADFGVAMKLSDKQAFDVDVVGCVCGRAGVGTPYWMAPEIIEMTGT-TTACDVWSVGCTIIELLEGKPPYFDLPQMTALYKIVQDDHPPLPDGTSQALRDFLLQCFKKQAQMRKSSVELL 645
            + EI+LLKKLNH +IV+YIDTI+T ++LHI LE MES SLS + K++G FSE  TAIY  Q+L+GL YLH+QGVLHRDIK ANIL +K G +KLADFGVAMKL   +  +          A VG+PYWMAPEIIEM+   T+ACD+WSV CT++EL+ G PPY DL  ++AL++IV DD+PPLP   S+A RDFLLQCFKK+  +R S+ ELL
Sbjct:    1 ETEIELLKKLNHQHIVKYIDTIRTVDYLHIALEFMESGSLSQVLKRYGVFSEHTTAIYSIQILQGLGYLHEQGVLHRDIKAANILISKDGRIKLADFGVAMKLGQSKTSEESQSQSETFDA-VGSPYWMAPEIIEMSAPPTSACDIWSVACTVVELVTGAPPYLDLSPVSALFRIVTDDYPPLPGLISEACRDFLLQCFKKEPLLRASAYELL 212          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11738.1448.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
MEKK2.050e-12694.81and related serine/threonine protein kinases amard... [more]
Hypothetical2.720e-8964.62protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014... [more]
Kinase-like7.750e-8382.05domain-containing protein (Fragment) n=1 Tax=Tribo... [more]
Serine/threonine-protein2.020e-8265.44kinase sepA n=1 Tax=Hondaea fermentalgiana TaxID=2... [more]
Uncharacterized5.190e-8263.43protein n=1 Tax=Pythium oligandrum TaxID=41045 Rep... [more]
Hypothetical9.480e-8163.13protein n=1 Tax=labyrinthulid quahog parasite QPX ... [more]
Uncharacterized4.050e-8061.32protein n=1 Tax=Carya illinoinensis TaxID=32201 Re... [more]
Protein1.270e-7963.43kinase domain-containing protein n=1 Tax=Globispor... [more]
MEKK1.650e-7961.32n=4 Tax=Pentapetalae TaxID=1437201 RepID=A0A2G9GH1... [more]
Hypothetical3.520e-7960.09protein (Fragment) n=1 Tax=Dictyocha speculum TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11738contigEcto-sp9_F_contig11738:154..3181 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score401.4
Seed ortholog evalue2.7e-109
Seed eggNOG ortholog2880.D8LLC1
Preferred nameCDC15
KEGG koko:K06683
KEGG Pathwayko04111,ko04113,ko04392,map04111,map04113,map04392
EggNOG free text desc.MAP kinase kinase kinase activity
EggNOG OGsKOG0198@1,KOG0198@2759
EC2.7.11.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons5
Model size649
Cds size648
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11738.1448.1prot_Ecto-sp9_F_contig11738.1448.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11738 154..3180 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928432.6273057-CDS-Ecto-sp9_F_contig11738:153..2631622928432.6273057-CDS-Ecto-sp9_F_contig11738:153..263Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11738 154..263 +
1692277869.216941-CDS-Ecto-sp9_F_contig11738:153..2631692277869.216941-CDS-Ecto-sp9_F_contig11738:153..263Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11738 154..263 +
1622928432.638751-CDS-Ecto-sp9_F_contig11738:927..11921622928432.638751-CDS-Ecto-sp9_F_contig11738:927..1192Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11738 928..1192 +
1692277869.226379-CDS-Ecto-sp9_F_contig11738:927..11921692277869.226379-CDS-Ecto-sp9_F_contig11738:927..1192Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11738 928..1192 +
1622928432.6495724-CDS-Ecto-sp9_F_contig11738:1811..19461622928432.6495724-CDS-Ecto-sp9_F_contig11738:1811..1946Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11738 1812..1946 +
1692277869.233634-CDS-Ecto-sp9_F_contig11738:1811..19461692277869.233634-CDS-Ecto-sp9_F_contig11738:1811..1946Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11738 1812..1946 +
1622928432.6613712-CDS-Ecto-sp9_F_contig11738:2506..26141622928432.6613712-CDS-Ecto-sp9_F_contig11738:2506..2614Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11738 2507..2614 +
1692277869.2409666-CDS-Ecto-sp9_F_contig11738:2506..26141692277869.2409666-CDS-Ecto-sp9_F_contig11738:2506..2614Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11738 2507..2614 +
1622928432.6757271-CDS-Ecto-sp9_F_contig11738:3150..31801622928432.6757271-CDS-Ecto-sp9_F_contig11738:3150..3180Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11738 3151..3180 +
1692277869.248546-CDS-Ecto-sp9_F_contig11738:3150..31801692277869.248546-CDS-Ecto-sp9_F_contig11738:3150..3180Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11738 3151..3180 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11738.1448.1

>prot_Ecto-sp9_F_contig11738.1448.1 ID=prot_Ecto-sp9_F_contig11738.1448.1|Name=mRNA_Ecto-sp9_F_contig11738.1448.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=216bp
LLFFQGEIDLLKKLNHPNIVQYIDTIQTAEHLHIVLEIMESSLSAMCKKF
GNFSESLTAIYMTQVLEGLKYLHDQGVLHRDIKGANILTTKRGLVKLADF
GVAMKLSDKQAFDVDVVGCVCGRAGVGTPYWMAPEIIEMTGTTTACDVWS
VGCTIIELLEGKPPYFDLPQMTALYKIVQDDHPPLPDGTSQALRDFLLQC
FKKQAQMRKSSVELLR
back to top

mRNA from alignment at Ecto-sp9_F_contig11738:154..3181+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11738.1448.1 ID=mRNA_Ecto-sp9_F_contig11738.1448.1|Name=mRNA_Ecto-sp9_F_contig11738.1448.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3028bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11738:154..3181+ (Ectocarpus species9 EcSCA_722f female)
CTGCTTTTTTTTCAGGGCGAGATCGACCTCCTCAAAAAGCTGAACCACCC GAACATCGTGCAGTACATCGACACCATCCAGACGGCGGAGCACCTGCACA TTGTGCTGGAGTGAGTGTTCTTTGTTTGATGTGCTCCAGCACCTTGACCG TTTTCGGGGCGCTGCCGAGCCGCCGCGGCCGCCGCACACACGAGGGGCGC CTTGCTTTTCCGCGGCTGTGGTTTTCTTTTTGTGCGGTGCGCTATATCAC ACGATGGTGCGGGAAAGGTTCGCAACACCAGCATCCTGATAATGTTTAAG GCCAACTGATTGGCTCGCCGTGATGGGGGCAAAAGATCGAGCCGGGCTGA TGTTTGTCAGTGAACCGATGTCTCAACCGCACAGCTCAACCGCAAAGCTG TCGGTATCACGAAGTACAGTATGAGTGTGTTACGACTCATCCCTAGAGCT GGAGCTAAACCTTAACCTTCCCGCACTTTCTTTCGTTTCGTGTGTAATTA AGCGTGTGTGAGAGCCGCACATTCACTCTCGACAGTGAATCACTGCACCG TTTTTTTGGGGGCCGTTTCTGATCACCTTTCTAGAGGTCGTACGTCTATG GCCTGTTGTCCAGTGCCGTGTAACAGTGAGCCTGTTGTTGTTTTGCATGT TGTCTTATTTTTTATCACGTCTACCTCCCCCCCCCCCCGCTCGACGTCCC ATCCGCGCCCGCTACCTACCTACGTCTCTCGGGGAACGTGTGCATGTGTG GGGCACCGCGGGGGGGGGTCGCAGAATCATGGAGAGTTCCTTGTCCGCCA TGTGCAAGAAGTTCGGAAACTTCTCCGAGTCGCTCACGGCGATCTACATG ACCCAGGTGCTGGAGGGGCTCAAGTACCTGCACGACCAAGGGGTGCTGCA CCGAGACATCAAGGGCGCTAACATCCTCACGACCAAGCGTGGACTGGTGA AGCTGGCCGACTTCGGCGTCGCCATGAAGCTCTCGGACAAGCAGGCGTTT GACGTGGACGTGGTGGGTTGCGTGTGTGGTCGGGCGGGGGTGTTGCTCGT AGCGGCGCTGTTTTTTGGTATGGATCTCGCAATGAGCAATTGAAGGGTTG TGTGTGTGTCTAGCTGTCTGCGCCTCTCTCGCGCGCGCGCACTTTCTCTG ACTGCCTCTGAAGGTTAACGTCGGTGGTTGGGAAAATACTCGTCATGTTG GCCTTGGTCATAAGGCCGCGGTTGTGTTTGCCTTCGAACATTACTCCTGT TTCTCAGTGAGTGAGATTATGTTGCTTGCAAGATCGGGGTAGGAGTACGG CAGGGGCGGGGAGAAGTGATGAGTCGGCATCTCGAAGGCTGGATCCGTAG GAACAAGGGCGGCGGCAGATTCGCAAAAGTCGTTCGTGCTGTTGTCGTCG TCATCGTCAAACCATATGACGGGATCAAGTTCTCTTCGACCTTTGCGGAT ACATAGCCCTCGGCGTGACGTCATCCTTGGCGGTGGCATATCGACCAATC TACCAGAAGAACACCAAGATAACTCCACTGCTGCTAATACTCATCCCCTT CGACTGCTGTGGTTTTATCTTAAGCGGGTACAATAGTCTCTCTTTGATTG GGTGTATATTTTCTAAAATGTTTCCAACTTCACTTCCATAATATTTAACC AAAAAAAGGTGGGCACGCCTTACTGGATGGCACCGGAGATTATCGAGATG ACGGGCACGACGACCGCATGCGACGTGTGGTCTGTAGGGTGCACCATCAT CGAGCTCCTGGAAGGGAAACCCCCCTACTTCGACCTCCCCCAGGTAAGAT CAATTTTACGAAGGCCAAATTGCAGGCCTTTGTTTTGTACAGATATAAAT GTTGTTGTGTTTTTGCCAAAACCACACGTCATTTTGTTCTGGTACCACTC GGTAGTCGGACTTGCGGCCCACTAGCCACTAGAATATATTGTCTCTCTTA CGCCTGTGTACTCTTCACTTTGTATGCGCATGTAAGCGCGCGAAGTGCAG CACATGATGAAGCGCTTCGGAGTACTAAACCTGCTGGAACTGCCAAGACA GCCACCCTTTGCCTCGTGCGAAAGCAACCCTGCCCCCGGGCGCTAGCCTG GTTGACGGCGTGCTCCAGTCCAAGTACCCTCTCGTCACGCTGACGCATAA TCCCGATGGTCGTTGCGCCGTTTGCGGGCAAACTCCCCCTCCCGCCTCTT GCCACTCTGTCTGTCTGCTCTCTCTCTCTCTCTCGGCTGTTGTTATACAT CATTTTACCTCGGGAACTGTCGACTCCCACCGTGATTCGGCTGGAATCCG GAATATCCCATCAAACAAACAAACAAACAAACAAACAAACAAACGGAAAT CAGATGACGGCCCTATACAAGATCGTCCAGGACGACCACCCCCCCCTGCC GGACGGCACGTCACAGGCCCTGCGGGATTTCTTGCTGCAGTGCTTCAAGA AGCAGGCCCAGGTGGGTGGGCGTGGAAAGAGCCCACGGTGCCGCGCATTT TGTTGTTCTCGGTGGGGGGTGTAGTCATGTTTTTTTCTTTATATACCGCA ATAATTGCATCTCTATCGATAGAAAAGGGTCTAGGATAAATTGGTTATAA ATTCACAGCGTTAGCGGGGTGCTACCTGTGTTTCTACGATCCCCAAGCAG CATATAGTGATACATGCCTTAGCTGTTACACCATTTGACCACGGGGGAAG GGGGGGGGGTGGTGTACTCATAGCCGTGCATGCCGTAGTTGTCAGGCCAT TGACCTCGCACGCGCAAGCTCATTGCCGCTGCCTATGGTTCTTGTAAACA CACTCACTCATTGGTTGCTGCAGCTTCACGCTCTCATCAAGGTGAGTCGC GAACGGGCCGTCCGCCGTGAAGCGAAACCCTTGTTCAACGAACAGGCAAA TATTCCCCCCGCACGTTCGGTCCCCGCCCCTCCCCGACCCACTGAAATGC TGACTAGTTTGTTTGTGTGGTTGTTTTTTCTTCGTCATCTGTCGTAGATG CGAAAATCGTCGGTGGAGCTGCTCAGAC
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11738:154..3181+

>mRNA_Ecto-sp9_F_contig11738.1448.1 ID=mRNA_Ecto-sp9_F_contig11738.1448.1|Name=mRNA_Ecto-sp9_F_contig11738.1448.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1296bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11738:154..3181+ (Ectocarpus species9 EcSCA_722f female)
CTGCTTTTTTTTCAGGGCGAGATCGACCTCCTCAAAAAGCTGAACCACCC
GAACATCGTGCAGTACATCGACACCATCCAGACGGCGGAGCACCTGCACA
TTGTGCTGGACTGCTTTTTTTTCAGGGCGAGATCGACCTCCTCAAAAAGC
TGAACCACCCGAACATCGTGCAGTACATCGACACCATCCAGACGGCGGAG
CACCTGCACATTGTGCTGGAAATCATGGAGAGTTCCTTGTCCGCCATGTG
CAAGAAGTTCGGAAACTTCTCCGAGTCGCTCACGGCGATCTACATGACCC
AGGTGCTGGAGGGGCTCAAGTACCTGCACGACCAAGGGGTGCTGCACCGA
GACATCAAGGGCGCTAACATCCTCACGACCAAGCGTGGACTGGTGAAGCT
GGCCGACTTCGGCGTCGCCATGAAGCTCTCGGACAAGCAGGCGTTTGACG
TGGACGTGGTGGGTTGCGTGTGTGGTCGGGCGGGGAATCATGGAGAGTTC
CTTGTCCGCCATGTGCAAGAAGTTCGGAAACTTCTCCGAGTCGCTCACGG
CGATCTACATGACCCAGGTGCTGGAGGGGCTCAAGTACCTGCACGACCAA
GGGGTGCTGCACCGAGACATCAAGGGCGCTAACATCCTCACGACCAAGCG
TGGACTGGTGAAGCTGGCCGACTTCGGCGTCGCCATGAAGCTCTCGGACA
AGCAGGCGTTTGACGTGGACGTGGTGGGTTGCGTGTGTGGTCGGGCGGGG
GTGGGCACGCCTTACTGGATGGCACCGGAGATTATCGAGATGACGGGCAC
GACGACCGCATGCGACGTGTGGTCTGTAGGGTGCACCATCATCGAGCTCC
TGGAAGGGAAACCCCCCTACTTCGACCTCCCCCAGGTGGGCACGCCTTAC
TGGATGGCACCGGAGATTATCGAGATGACGGGCACGACGACCGCATGCGA
CGTGTGGTCTGTAGGGTGCACCATCATCGAGCTCCTGGAAGGGAAACCCC
CCTACTTCGACCTCCCCCAGATGACGGCCCTATACAAGATCGTCCAGGAC
GACCACCCCCCCCTGCCGGACGGCACGTCACAGGCCCTGCGGGATTTCTT
GCTGCAGTGCTTCAAGAAGCAGGCCCAGATGACGGCCCTATACAAGATCG
TCCAGGACGACCACCCCCCCCTGCCGGACGGCACGTCACAGGCCCTGCGG
GATTTCTTGCTGCAGTGCTTCAAGAAGCAGGCCCAGATGCGAAAATCGTC
GGTGGAGCTGCTCAGAATGCGAAAATCGTCGGTGGAGCTGCTCAGA
back to top