mRNA_Ecto-sp9_F_contig11730.1442.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11730.1442.1
Unique NamemRNA_Ecto-sp9_F_contig11730.1442.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig11730.1442.1 vs.
Match: helix-turn-helix (domain-containing protein n=1 Tax=Roseovarius indicus TaxID=540747 RepID=UPI000B100612)

HSP 1 Score: 70.9 bits (172), Expect = 1.180e-14
Identity = 34/56 (60.71%), Postives = 42/56 (75.00%), Query Frame = 1 
Query:    1 PTAINSAVAAKILGVSKSHLEKLRLEEPERSPPFFRVGRAVRYWPDQLRRWAAEQS 168
            P A+++A AA  LGVSKSHLEKLR+E PE SPP+FRVGR +RY   +L  WA + S
Sbjct:   38 PYALDTASAAAFLGVSKSHLEKLRIENPESSPPYFRVGRCIRYPVRRLMDWAEQSS 93
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BLAST of mRNA_Ecto-sp9_F_contig11730.1442.1 vs.
Match: HTH_17 (domain-containing protein n=1 Tax=Robiginitomaculum sp. TaxID=2030823 RepID=A0A2G2GGI7_9PROT)

HSP 1 Score: 65.5 bits (158), Expect = 7.290e-13
Identity = 30/50 (60.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:    7 AINSAVAAKILGVSKSHLEKLRLEEPERSPPFFRVGRAVRYWPDQLRRWA 156
            A+ +  A+++L +SKS+LEKLRL + E+SPPFFR+GRAVRY  D LR+WA
Sbjct:    8 AVTTKTASEMLKISKSYLEKLRLYDREKSPPFFRIGRAVRYPVDDLRKWA 57
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BLAST of mRNA_Ecto-sp9_F_contig11730.1442.1 vs.
Match: hypothetical (protein n=1 Tax=Roseobacter sp. YSTF-M11 TaxID=2859783 RepID=UPI001C5DB176)

HSP 1 Score: 47.0 bits (110), Expect = 1.700e-5
Identity = 24/57 (42.11%), Postives = 36/57 (63.16%), Query Frame = 1 
Query:    1 PTAINSAVAAKILGVSKSHLEKLRLEEPERSPPFFRVGRA-VRYWPDQLRRWAAEQS 168
            P  +++++AAK+LG+S+S LEK R       PP+   GRA +RY    L  WAAE++
Sbjct:    7 PLYVDTSMAAKLLGLSRSTLEKYRFYRDPNGPPYAVFGRASIRYHTPSLLEWAAERT 63
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11730.1442.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
helix-turn-helix1.180e-1460.71domain-containing protein n=1 Tax=Roseovarius indi... [more]
HTH_177.290e-1360.00domain-containing protein n=1 Tax=Robiginitomaculu... [more]
hypothetical1.700e-542.11protein n=1 Tax=Roseobacter sp. YSTF-M11 TaxID=285... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11730contigEcto-sp9_F_contig11730:3006..3179 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size174
Cds size174
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928432.2476652-CDS-Ecto-sp9_F_contig11730:3005..31791622928432.2476652-CDS-Ecto-sp9_F_contig11730:3005..3179Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11730 3006..3179 +
1692277869.0858264-CDS-Ecto-sp9_F_contig11730:3005..31791692277869.0858264-CDS-Ecto-sp9_F_contig11730:3005..3179Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11730 3006..3179 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11730.1442.1prot_Ecto-sp9_F_contig11730.1442.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11730 3006..3179 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11730.1442.1

>prot_Ecto-sp9_F_contig11730.1442.1 ID=prot_Ecto-sp9_F_contig11730.1442.1|Name=mRNA_Ecto-sp9_F_contig11730.1442.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=58bp
PTAINSAVAAKILGVSKSHLEKLRLEEPERSPPFFRVGRAVRYWPDQLRR
WAAEQSQ*
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mRNA from alignment at Ecto-sp9_F_contig11730:3006..3179+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11730.1442.1 ID=mRNA_Ecto-sp9_F_contig11730.1442.1|Name=mRNA_Ecto-sp9_F_contig11730.1442.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=174bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11730:3006..3179+ (Ectocarpus species9 EcSCA_722f female)
CCCACCGCAATAAACTCAGCTGTTGCTGCAAAAATATTGGGTGTGTCGAA
ATCTCATCTCGAAAAGCTCCGGCTCGAAGAGCCGGAGAGATCACCACCGT
TTTTTCGAGTGGGACGCGCAGTGAGGTACTGGCCAGATCAGCTGCGTAGA
TGGGCTGCTGAGCAATCCCAATGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11730:3006..3179+

>mRNA_Ecto-sp9_F_contig11730.1442.1 ID=mRNA_Ecto-sp9_F_contig11730.1442.1|Name=mRNA_Ecto-sp9_F_contig11730.1442.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=348bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11730:3006..3179+ (Ectocarpus species9 EcSCA_722f female)
CCCACCGCAATAAACTCAGCTGTTGCTGCAAAAATATTGGGTGTGTCGAA
ATCTCATCTCGAAAAGCTCCGGCTCGAAGAGCCGGAGAGATCACCACCGT
TTTTTCGAGTGGGACGCGCAGTGAGGTACTGGCCAGATCAGCTGCGTAGA
TGGGCTGCTGAGCAATCCCAATGACCCACCGCAATAAACTCAGCTGTTGC
TGCAAAAATATTGGGTGTGTCGAAATCTCATCTCGAAAAGCTCCGGCTCG
AAGAGCCGGAGAGATCACCACCGTTTTTTCGAGTGGGACGCGCAGTGAGG
TACTGGCCAGATCAGCTGCGTAGATGGGCTGCTGAGCAATCCCAATGA
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